EWM28486.1, cds2169 (CDS) Nannochloropsis gaditana

Overview
NameEWM28486.1
Unique Namecds2169
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1071601..1072584 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28486.1
Productphosphoglycerate bisphosphoglycerate mutase family protein
Orig transcript idgnl|cribi|Naga_100058g4.4253.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1071601..1072584 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR001345PG/BPGM_mutase_AS
IPR029033His_PPase_superfam
IPR013078His_Pase_superF_clade-1
Homology
BLAST of EWM28486.1 vs. NCBI_GenBank
Match: gi|585110902|gb|EWM28486.1| (phosphoglycerate bisphosphoglycerate mutase family protein [Nannochloropsis gaditana])

HSP 1 Score: 682.559 bits (1760), Expect = 0.000e+0
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
Query:    1 MRALAVRGLLLFVNICRSAAFSSVSSQKRSKMSGVAAAGVKISRDGDRSAFSYIDVILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCGALRLRLALPTSLAEATALVQVGGYTLPVTDSETMFAANECGEEDRPMRHYRPVHPNDWEPEEHLPTRMGLNPRETSAPAVGPTI 327
            MRALAVRGLLLFVNICRSAAFSSVSSQKRSKMSGVAAAGVKISRDGDRSAFSYIDVILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCGALRLRLALPTSLAEATALVQVGGYTLPVTDSETMFAANECGEEDRPMRHYRPVHPNDWEPEEHLPTRMGLNPRETSAPAVGPTI
Sbjct:    1 MRALAVRGLLLFVNICRSAAFSSVSSQKRSKMSGVAAAGVKISRDGDRSAFSYIDVILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCGALRLRLALPTSLAEATALVQVGGYTLPVTDSETMFAANECGEEDRPMRHYRPVHPNDWEPEEHLPTRMGLNPRETSAPAVGPTI 327          
BLAST of EWM28486.1 vs. NCBI_GenBank
Match: gi|553188657|ref|XP_005854836.1| (phosphoglycerate bisphosphoglycerate mutase family protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294224|gb|EKU21524.1| phosphoglycerate bisphosphoglycerate mutase family protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 436.802 bits (1122), Expect = 5.060e-153
Identity = 209/210 (99.52%), Postives = 209/210 (99.52%), Query Frame = 0
Query:    1 MRALAVRGLLLFVNICRSAAFSSVSSQKRSKMSGVAAAGVKISRDGDRSAFSYIDVILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERV 210
            MRALAVRGLLLFVNICRSAAFSSVSSQKRSKMSGVAAAGVKISRDGD SAFSYIDVILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERV
Sbjct:    6 MRALAVRGLLLFVNICRSAAFSSVSSQKRSKMSGVAAAGVKISRDGDSSAFSYIDVILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERV 215          
BLAST of EWM28486.1 vs. NCBI_GenBank
Match: gi|299115497|emb|CBN75661.1| (plastid phosphoglycerate mutase protein precursor [Ectocarpus siliculosus])

HSP 1 Score: 153.68 bits (387), Expect = 1.543e-40
Identity = 86/212 (40.57%), Postives = 128/212 (60.38%), Query Frame = 0
Query:   45 DGDRSAFSYIDVILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALA--ARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPT--FVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILT----QSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCGALRLR 248
            DG+  +F      L RHG+T  NA GR QG  D S LT +G SQALE G+ LA  A       + +SP+ RA+ T + + +E R+   ++  K   T   VP+I+EI L++WQG L++D+    PE++ +W+ +P+ F     +P R+LW RA  +W+QI +    Q QP  R L+VAH+ INQA+ +TALG   T +R+L++PNC  L L+
Sbjct:   78 DGELESF-----FLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRK---SEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQP--RTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQ 279          
BLAST of EWM28486.1 vs. NCBI_GenBank
Match: gi|551646391|ref|XP_005825982.1| (hypothetical protein GUITHDRAFT_76658 [Guillardia theta CCMP2712] >gi|428170074|gb|EKX39002.1| hypothetical protein GUITHDRAFT_76658 [Guillardia theta CCMP2712])

HSP 1 Score: 139.813 bits (351), Expect = 1.519e-36
Identity = 75/190 (39.47%), Postives = 114/190 (60.00%), Query Frame = 0
Query:   57 ILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLR-QDLQAQFPEEFHNWMNE-PAIFRVGD-HFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCG 243
            +  RHG+T +NAEGR QG  D SRLT +GE+QA  +GR L+      D +F+SPL RAR T +L        G       +   + +++E+ L++W+G L+ Q+++  +P+ +  W  E P  F++    +P+R+LW RA + WE +   +  G+  LIVAH+GINQA+  T LG  E  +R+L FPNCG
Sbjct:   18 LFLRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGRILS--DIPIDSVFVSPLTRARMTLELAAA-----GSGRNLSDSAMVLDDLREVDLHEWEGMLKKQEIKEMYPDIYSLWRGENPREFKLDSGKYPIRDLWKRAGKVWEVLRRDAANGKTSLIVAHNGINQALLCTTLGLSEEYFRKLEFPNCG 200          
BLAST of EWM28486.1 vs. NCBI_GenBank
Match: gi|104640802|gb|ABF73003.1| (plastid phosphoglycerate mutase protein precursor, partial [Karenia brevis])

HSP 1 Score: 142.124 bits (357), Expect = 5.199e-36
Identity = 77/197 (39.09%), Postives = 116/197 (58.88%), Query Frame = 0
Query:   57 ILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQR-FDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFV--PEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGER-----VLIVAHSGINQAMCFTALGYGETMYRRLNFPNCGAL 245
            ++ RHGET  NA+G  QG  D+SRLT KG++QA + G  LA       +++F+SPL RA  T +L+ +          P   P  +  PE++EI LY W+G  ++DL+ + P+ +  W +    F V  H+P+ ELW RA+ +W  I   S+ G+R      LIV H+GI QA+ F+A+G   + +R+L+FPN GAL
Sbjct:  100 LILRHGETNFNAKGILQGSSDISRLTEKGQAQANKAGMELATLSDLPIEQVFVSPLTRATSTLELVAQS--------LPCSLPEAITLPELREIDLYSWEGKQKEDLKREMPDTYQAWKSADPDFVVDGHYPLVELWQRAKEAWAAI-RASEDGKRDIDGVTLIVCHNGIGQALFFSAIGLDASYFRQLSFPNAGAL 287          
BLAST of EWM28486.1 vs. NCBI_GenBank
Match: gi|255080054|ref|XP_002503607.1| (predicted protein [Micromonas commoda] >gi|226518874|gb|ACO64865.1| predicted protein [Micromonas commoda])

HSP 1 Score: 140.584 bits (353), Expect = 6.991e-35
Identity = 80/188 (42.55%), Postives = 111/188 (59.04%), Query Frame = 0
Query:   56 VILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCG 243
            V L RHG++  N EGR QG  D+S LT KGESQA E+ R +   K  FD  F SPLARA  T +++        W D        + E++EI LY +QG L+++ +A++ +++  W  +PA F +  HFPVRELW R    W+ IL     G+ VL+VAH+ +NQ+M   ALG G   +RRL+  NCG
Sbjct:   60 VTLVRHGQSTWNKEGRIQGSSDLSVLTQKGESQA-EITREMLQGKH-FDIGFRSPLARASRTAEVI--------W-DSRDSKLIDLWELREIDLYSFQGLLKEEGKAKYGDKYAAWKADPANFEIDGHFPVRELWERGAECWKSIL--DADGQDVLVVAHNAVNQSMVANALGLGSEYFRRLSQSNCG 234          
BLAST of EWM28486.1 vs. NCBI_GenBank
Match: gi|1032277332|gb|OAO91660.1| (hypothetical protein AXX17_AT5G22050 [Arabidopsis thaliana])

HSP 1 Score: 135.961 bits (341), Expect = 1.544e-34
Identity = 77/189 (40.74%), Postives = 108/189 (57.14%), Query Frame = 0
Query:   56 VILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCGA 244
            V+L RHG++  N EGR QG  D S LT KGESQA E+ R +      FD  F SPL R++ T +++        W    +    F  +++EI LY +QG L+++ + +F E F  W  +PA F +  H+PVRELW RAR  W  IL  +   + VL+VAH+ +NQA+  TA+G G   +R L   NCG 
Sbjct:   50 VVLVRHGQSTWNEEGRIQGSSDFSVLTKKGESQA-EISRQMLI-DDSFDVCFTSPLKRSKKTAEII--------WGSR-ESEMIFDYDLREIDLYSFQGLLKKEGKEKFGEAFKQWQEDPANFIIDGHYPVRELWSRARSCWPGIL--AHESKSVLVVAHNAVNQALLATAIGLGTEYFRSLLQSNCGV 225          
BLAST of EWM28486.1 vs. NCBI_GenBank
Match: gi|568834588|ref|XP_006471407.1| (PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Citrus sinensis])

HSP 1 Score: 141.354 bits (355), Expect = 1.952e-34
Identity = 78/188 (41.49%), Postives = 110/188 (58.51%), Query Frame = 0
Query:   56 VILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCG 243
            V+L RHG++  NAEGR QG  D S LT KGE+QA E  R +    + FD  F SPL R++ T +++    +    TDY         +++EI LY +QG L+ + +A+F   +H W   PA F +  H+PVRELW RAR  W +IL  +   + VL+VAH+ +NQA+  TA+G G   +R L   NCG
Sbjct:   77 VVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQA-ETSRQMLF-DESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDY---------DLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYPVRELWARARNCWTKIL--AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCG 251          
BLAST of EWM28486.1 vs. NCBI_GenBank
Match: gi|641826257|gb|KDO45488.1| (hypothetical protein CISIN_1g010288mg [Citrus sinensis] >gi|641826258|gb|KDO45489.1| hypothetical protein CISIN_1g010288mg [Citrus sinensis])

HSP 1 Score: 138.272 bits (347), Expect = 2.074e-34
Identity = 76/188 (40.43%), Postives = 108/188 (57.45%), Query Frame = 0
Query:   56 VILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCG 243
            V+L RHG++  NAEGR QG  D S LT KGE+QA E  R +    + FD  F SPL R++ T +++    +    TDY         +++EI LY +QG L+ + + +F   +  W   PA F +  H+PVRELW RAR  W +IL  +   + VL+VAH+ +NQA+  TA+G G   +R L   NCG
Sbjct:   71 VVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQA-ETSRQMLF-DESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDY---------DLREIDLYSFQGLLKHEGKTKFGPAYRQWQVNPANFSIDGHYPVRELWARARNCWTKIL--AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCG 245          
BLAST of EWM28486.1 vs. NCBI_GenBank
Match: gi|1032277330|gb|OAO91658.1| (hypothetical protein AXX17_AT5G22050 [Arabidopsis thaliana])

HSP 1 Score: 135.576 bits (340), Expect = 2.394e-34
Identity = 77/189 (40.74%), Postives = 108/189 (57.14%), Query Frame = 0
Query:   56 VILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCGA 244
            V+L RHG++  N EGR QG  D S LT KGESQA E+ R +      FD  F SPL R++ T +++        W    +    F  +++EI LY +QG L+++ + +F E F  W  +PA F +  H+PVRELW RAR  W  IL  +   + VL+VAH+ +NQA+  TA+G G   +R L   NCG 
Sbjct:   50 VVLVRHGQSTWNEEGRIQGSSDFSVLTKKGESQA-EISRQMLI-DDSFDVCFTSPLKRSKKTAEII--------WGSR-ESEMIFDYDLREIDLYSFQGLLKKEGKEKFGEAFKQWQEDPANFIIDGHYPVRELWSRARSCWPGIL--AHESKSVLVVAHNAVNQALLATAIGLGTEYFRSLLQSNCGV 225          
The following BLAST results are available for this feature:
BLAST of EWM28486.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110902|gb|EWM28486.1|0.000e+0100.00phosphoglycerate bisphosphoglycerate mutase family... [more]
gi|553188657|ref|XP_005854836.1|5.060e-15399.52phosphoglycerate bisphosphoglycerate mutase family... [more]
gi|299115497|emb|CBN75661.1|1.543e-4040.57plastid phosphoglycerate mutase protein precursor ... [more]
gi|551646391|ref|XP_005825982.1|1.519e-3639.47hypothetical protein GUITHDRAFT_76658 [Guillardia ... [more]
gi|104640802|gb|ABF73003.1|5.199e-3639.09plastid phosphoglycerate mutase protein precursor,... [more]
gi|255080054|ref|XP_002503607.1|6.991e-3542.55predicted protein [Micromonas commoda] >gi|2265188... [more]
gi|1032277332|gb|OAO91660.1|1.544e-3440.74hypothetical protein AXX17_AT5G22050 [Arabidopsis ... [more]
gi|568834588|ref|XP_006471407.1|1.952e-3441.49PREDICTED: probable 2-carboxy-D-arabinitol-1-phosp... [more]
gi|641826257|gb|KDO45488.1|2.074e-3440.43hypothetical protein CISIN_1g010288mg [Citrus sine... [more]
gi|1032277330|gb|OAO91658.1|2.394e-3440.74hypothetical protein AXX17_AT5G22050 [Arabidopsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2177rna2177Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications