EWM28545.1, cds2134 (CDS) Nannochloropsis gaditana

Overview
NameEWM28545.1
Unique Namecds2134
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:979881..980041 -
Alignment locationCM002458.1:978536..979733 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28545.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g19.588.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:979881..980041 -
CM002458.1supercontigCM002458.1:978536..979733 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR025712Nup54_alpha-helical_dom
Homology
BLAST of EWM28545.1 vs. NCBI_GenBank
Match: gi|585110963|gb|EWM28545.1| (hypothetical protein Naga_100009g19 [Nannochloropsis gaditana])

HSP 1 Score: 894.804 bits (2311), Expect = 0.000e+0
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0
Query:    1 MSFAGFGTASQPQQNSQTPKPFSSFGAPAPASLFGTPAAASATGAFGSTNAFGSQPQQQQQQQQQQQQQQQQQQQPSLFGGFGLNASGTTTGTASRQPFGASAYGSTGSTTAGLFGTPAASSSPFGMTAGTSAQKPPTPGFFGGTSGFGGGGGGFGGMGGVGRHPGAGQGPNTVGAGAMGSMGGMPFAAPTPQQQEQQRQLQQRQFWEQELNMLREAYLPHDQPASQALQQQQPQLGMFASSLQPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVRAGRGGVV 452
            MSFAGFGTASQPQQNSQTPKPFSSFGAPAPASLFGTPAAASATGAFGSTNAFGSQPQQQQQQQQQQQQQQQQQQQPSLFGGFGLNASGTTTGTASRQPFGASAYGSTGSTTAGLFGTPAASSSPFGMTAGTSAQKPPTPGFFGGTSGFGGGGGGFGGMGGVGRHPGAGQGPNTVGAGAMGSMGGMPFAAPTPQQQEQQRQLQQRQFWEQELNMLREAYLPHDQPASQALQQQQPQLGMFASSLQPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVRAGRGGVV
Sbjct:    1 MSFAGFGTASQPQQNSQTPKPFSSFGAPAPASLFGTPAAASATGAFGSTNAFGSQPQQQQQQQQQQQQQQQQQQQPSLFGGFGLNASGTTTGTASRQPFGASAYGSTGSTTAGLFGTPAASSSPFGMTAGTSAQKPPTPGFFGGTSGFGGGGGGFGGMGGVGRHPGAGQGPNTVGAGAMGSMGGMPFAAPTPQQQEQQRQLQQRQFWEQELNMLREAYLPHDQPASQALQQQQPQLGMFASSLQPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVRAGRGGVV 452          
BLAST of EWM28545.1 vs. NCBI_GenBank
Match: gi|553185418|ref|XP_005854248.1| (carbohydratebinding protein [Nannochloropsis gaditana CCMP526] >gi|422294814|gb|EKU22114.1| carbohydratebinding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 891.723 bits (2303), Expect = 0.000e+0
Identity = 451/452 (99.78%), Postives = 451/452 (99.78%), Query Frame = 0
Query:    1 MSFAGFGTASQPQQNSQTPKPFSSFGAPAPASLFGTPAAASATGAFGSTNAFGSQPQQQQQQQQQQQQQQQQQQQPSLFGGFGLNASGTTTGTASRQPFGASAYGSTGSTTAGLFGTPAASSSPFGMTAGTSAQKPPTPGFFGGTSGFGGGGGGFGGMGGVGRHPGAGQGPNTVGAGAMGSMGGMPFAAPTPQQQEQQRQLQQRQFWEQELNMLREAYLPHDQPASQALQQQQPQLGMFASSLQPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVRAGRGGVV 452
            MSFAGFGTASQPQQNSQTPKPFSSFGAPAPASLFGTPAAASATGAFGSTNAFGSQPQQQQQQQQQQQQQQQQQQQPSLFGGFGLNASGTTTGTASRQPFGASAYGSTGSTTAGLFGTPAASSSPFGMTAGTSAQKPPTPGFFGGTSGFGGG GGFGGMGGVGRHPGAGQGPNTVGAGAMGSMGGMPFAAPTPQQQEQQRQLQQRQFWEQELNMLREAYLPHDQPASQALQQQQPQLGMFASSLQPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVRAGRGGVV
Sbjct:    1 MSFAGFGTASQPQQNSQTPKPFSSFGAPAPASLFGTPAAASATGAFGSTNAFGSQPQQQQQQQQQQQQQQQQQQQPSLFGGFGLNASGTTTGTASRQPFGASAYGSTGSTTAGLFGTPAASSSPFGMTAGTSAQKPPTPGFFGGTSGFGGGEGGFGGMGGVGRHPGAGQGPNTVGAGAMGSMGGMPFAAPTPQQQEQQRQLQQRQFWEQELNMLREAYLPHDQPASQALQQQQPQLGMFASSLQPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVRAGRGGVV 452          
BLAST of EWM28545.1 vs. NCBI_GenBank
Match: gi|1173929796|gb|OQR82965.1| (carbohydrate-binding protein [Achlya hypogyna])

HSP 1 Score: 82.4185 bits (202), Expect = 2.346e-13
Identity = 40/167 (23.95%), Postives = 89/167 (53.29%), Query Frame = 0
Query:  280 IEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRT---LNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDE 443
            +  ++K Q E   +  ++ E +   VK +   +R    +LA+CR  H+ L +R + ++++L+V + + +P+  EE +  + L+ + G L+   +    +NE+  +    E    ++  Q   C L+  D+HL+   +++Q+ GL+ +T  L +D + VE+++  L +
Sbjct:  284 LSTRIKLQHEHADKFTKYAEDMVAQVKEMEKTSRDTDVKLAQCRHQHVALFHRLVQLMRKLEVFKNLRKPLHAEEVRLMETLKKVAGLLDNPTQFKARMNELMALQAMQEAKPHQDSEQ---CQLSEHDLHLVYGIMDRQRQGLEHVTKVLAQDMRDVEIMQRALAD 447          
BLAST of EWM28545.1 vs. NCBI_GenBank
Match: gi|669157986|ref|XP_008614555.1| (hypothetical protein SDRG_10348 [Saprolegnia diclina VS20] >gi|530733911|gb|EQC32153.1| hypothetical protein SDRG_10348 [Saprolegnia diclina VS20])

HSP 1 Score: 76.2554 bits (186), Expect = 2.761e-11
Identity = 89/367 (24.25%), Postives = 156/367 (42.51%), Query Frame = 0
Query:  100 GASAYGSTGSTTAGLFGTPAASSSPFGMTAGTSAQKPPTPGF-FGGTSGFGGGGGGFGGMGGVGRHPGAGQGPNTVGAGA-------------------MGSMGGMPFAAPTPQQQEQQRQLQQRQFWEQELNMLREAYLPHDQPASQALQQQQPQLGMFASSLQPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEK---QTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDE 443
            GA+A  ST ST+A  FG+ +A ++P     G+     PT  F FG  +    G GGFG         G  Q        A                   M S+ G+  A   PQQ   +  L       Q+   +R A++  ++  +QA Q+  P              P+ V+ +K                EL  R      +K QQE   +   + E +   VK +   +R    +LA+CR  H  L +R + ++++L+V + + +P+  +E    +T  ++ SML         +NE+  +  +     +  P QE  C L+ +D+HL+   +++Q+ GL+ +T  L +D + VE++++ L +
Sbjct:  125 GAAATPSTPSTSAFSFGSNSA-TAPSTGGFGSGFGSAPTSNFSFGNAAAKPSGFGGFGAAAPTAPAFGLFQLNAASSTNAFPGATNALAAATSAAANSPMESLTGIRMAYMDPQQSRFKHMLYNAVDPAQKHLYVRPAHI-SEKLWTQA-QRDNPDPA--------NCVPAAVIGFK----------------ELSTR------IKLQQEHADKFATYAEDMVTQVKEMEKTSRDTDVKLAQCRHQHAALFHRLIQLMRKLEVFKNLRKPLHADEVKLFETLKKVASMLDNPTQFKARMNELMAL--QAMQAAKPHPDQE-QCQLSDQDLHLVFGIMDRQRQGLEHVTKVLSQDMRDVEIMQKALAD 455          
BLAST of EWM28545.1 vs. NCBI_GenBank
Match: gi|758368562|emb|CEP09009.1| (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 72.4034 bits (176), Expect = 5.186e-10
Identity = 124/479 (25.89%), Postives = 186/479 (38.83%), Query Frame = 0
Query:   32 SLFGTPAAASATGAFGSTNAFGSQPQQQQQQQQQQQQQQQQQQQPSLFGGF-GLNASGTTTGTASRQPFGASAYGSTGSTTAGLFGTPAASSS-PFGMTAGTSAQKPPTPGFFGGTSGFGGGG--------GGFG---------GMGGVGRHPGA------------GQGPNTVGAGAMGSMGGMPFAAPTPQQ--------------QEQQRQL---QQRQFWEQELNMLREAYLPHDQPASQALQQQQPQLGMFASS-----LQPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMR--RVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRL----------ESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVR 445
            S FG+  A S TG FG    FG+ P                    S  GGF G  A+  T+ T+    FG +   ST S   G   TPA S++  FG    TS             SGFGG G        GGFG           GG+G  P A            G   +T    A GS G        PQQ              Q+QQ  +    Q + W Q   ++R     H  P S   Q +     M   +     ++PQ Q  ++ + +   +  D +T VP      D      +++ +Q+E+   +++E  ERL   VK  Y      K  L   +  H +   R L +L+  QVLR  N P+S +E+ + +RL          E M  +L      L E+     EDE+ R      ++ C +  +D+  + + LE +Q G+ ++   L  D + ++L++  L E R
Sbjct:   61 SSFGSTPATSTTGGFGGFGGFGAAPAT------------------STAGGFSGFGATPATSTTSGLSGFGTAPATSTASGFGGFGTTPATSNAGGFGTAPATST-----------ASGFGGFGTTPATSNAGGFGTAPATSTAASFGGLGATPAASTFGTSTATSSGGFSASTAAKPAFGSFGNNTLFGAKPQQPAFGSQQTQTGFGNQQQQSGIPPPVQEKVW-QNFALIRA----HFDPTSPLCQFRHYFYNMVPPNEVHLYVRPQNQDEQLWN-EAQRKNPDPTTMVPVLAVGFDDILKRMEIQSKQQELHQAKLRETAERL-ASVKIHYESQTLVK--LEEHKRRHRDFAQRLLRLLRYSQVLRYKNLPLSADEENSMERLNRLNNLQDRPEVMNQKLMVVWNKLQEIKARRTEDEIRRGSS---KVWCAVNDDDLDSIGKVLEAEQKGIQYVADVLKYDTKELDLIESALKERR 498          
BLAST of EWM28545.1 vs. NCBI_GenBank
Match: gi|698808056|ref|XP_009837057.1| (hypothetical protein H257_11738 [Aphanomyces astaci] >gi|574108122|gb|ETV73631.1| hypothetical protein H257_11738 [Aphanomyces astaci])

HSP 1 Score: 70.4774 bits (171), Expect = 2.162e-9
Identity = 40/177 (22.60%), Postives = 87/177 (49.15%), Query Frame = 0
Query:  280 IEAKLKGQQEEMRRVQ---EHVERLGGGVKALYSQ-------ARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVRA 446
            + A + G +E   R+Q    H+++  G  K L +Q       +R    +L +CR  H+ L +R + ++++L++ +Q+ +P+   E      L+ +   L+   +    +  ++    +      +Q     L  ED+  + + L+KQ+ GL+ LT  L +D + V+++K+ L++  A
Sbjct:  279 VPAAVVGFKELSTRIQLQQAHIKKFHGYAKDLVAQVQDMEKASRHTDVKLTQCRQQHIALFHRLVQLMRKLELFKQLRKPLHPSEHHLAATLKHVQSLLDNPTQFKAHMHELMTLQSMQAALPNQQRPDAQLTDEDMATVFRVLDKQREGLEHLTRILNQDLRDVQIMKKALEDDSA 455          
BLAST of EWM28545.1 vs. NCBI_GenBank
Match: gi|1210520091|dbj|GAX20974.1| (hypothetical protein FisN_1Lh360 [Fistulifera solaris])

HSP 1 Score: 67.0106 bits (162), Expect = 2.070e-8
Identity = 114/465 (24.52%), Postives = 178/465 (38.28%), Query Frame = 0
Query:   17 QTPKPFSSFGAPAPASLFGTPAAASATGAFGS---TNAFGSQPQQQQQQQQQQQQQQQQQQQPSLFGGFGLNASGTTTGTASRQPFGASAYGSTGSTTAGLFGTPAASSSPFGM----TAGTSAQKPPTPGFFGGTSGFGGGGGGFGGMGGVGRHP----GAGQGPNTVGAGAMGSMGGMPFAAPT-PQQQEQQRQL-----QQRQFWEQELNMLREAY-----------------LPHDQPASQALQQQQPQLGM-----FASSLQPQQQPSRVVDYKFAFRV-TDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKL 441
            ++P P ++FG+PAP++ FG PAA+S  G FGS   + AFG  P                                +++G     P   S +GST S+  G FG PA S   FG     + G     P +   FG T      GG FG        P     A       GA +           PT PQQ  QQ  L     Q+    +  L  L  AY                 L H    S  ++Q Q   G+           P+       D+  A    TD    +P  V +    A++A+++GQQE+     + +  +    + +  +   A  RL         L  R LAV+++++VLR    P+ Q E +   +L  +  ++   I+ +     +    E  R   P Q  T  L   D+  L+  L K +  L  +TTA+ +D   +EL+++++
Sbjct:   15 RSPAPTTTFGSPAPSTNFGAPAASS--GLFGSASPSTAFGGTP--------------------------------SSSGIFGSAPSSGSLFGSTPSS--GTFGAPAPSGGLFGSAPAPSTGLFGSAPSSGSLFGST--LAPSGGLFGNTSNTSSAPFSFSNAAPSSGLFGAPSTSGFSQQQQLPPTVPQQAAQQALLDASARQEEYRVQSALEKLNHAYQGTEIATDTKSAHFSVTLYHS--VSPEIRQMQSLQGVGLDGKPLPIAPPRPPQISADDWTRAVVCNTDHENYMP--VAVVGARALQARVQGQQEQANTCIQQLNDIQETAEVIRDRNHGANARLVEAEREQARLRKRMLAVMRKVEVLRCFGHPLQQGEVEAMHKLAEVEKQIYQNIQPV-----LQRLAENVRANAPSQPPTVALP-NDLDELKGVLTKHREALSRMTTAVQQDKGDLELIQKRV 431          
BLAST of EWM28545.1 vs. NCBI_GenBank
Match: gi|1173950379|gb|OQR98346.1| (carbohydrate-binding protein [Thraustotheca clavata])

HSP 1 Score: 66.6254 bits (161), Expect = 4.002e-8
Identity = 106/477 (22.22%), Postives = 183/477 (38.36%), Query Frame = 0
Query:    2 SFAGFGTASQPQQNSQTPKPFSSFGAPAPASLFGTPAAASATGAFGSTNAFGSQPQQQQQQQQQQQQQQQQQQQPSLFG-GFGLNASGTTTGTASRQPFGASAYG------------------STGSTTAGLFGTPAASSSPFGMTAGTSAQKPPTPGFFGGTSGFGGGGGGFGGMGGVGRHPGAGQGPNTVGAGAMGSMGGMPFAAPTPQQQEQQRQLQQRQFWEQELNMLREAYLPHDQPASQALQQQQPQLGMFASSLQPQQQPSRVVDYKFAFRVT--------DTSTGVPREV----ELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQ---TKDRLESMLGR---LEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKL 441
            SF GFG  S P                          ++ AT A  ST +FGS                     P+  G  FG N   T+T  AS  P    ++G                  +T +   G FG PAA +S F    G +A KP   G FG T+       G   +G       A Q PN     A+ +       +P                  + L  +R AY+           QQ     MF +++ P Q+   V     + ++         D +  VP  V    EL  R      +K QQE   +   + + +   VK +   +R    +LA+CR  H+ L +R + ++++L+V + + +P+ Q+E +   T  ++ S+L      +  +  L  +  ++++  +D  +E +      L+  D+ L+   + +Q+ GL+ +T  L +D + VE++++ L
Sbjct:  227 SFGGFGATSNP--------------------------SSQATTANSSTFSFGSAAPSSTPSSSGFSFGSTPSTTPASSGFSFGGN---TSTPAASTTPSTGFSFGGASTTPSTAPTTSFPFGNTTTAPATGGFGAPAAGTSTFSF--GNNAAKPSMFGGFGATTPAQQPASGLFQLGAATS--NAFQ-PNNSTTNALAAATSAAANSPM-----------------ESLTGIRMAYMD---------PQQSRFKHMFYNAVDPAQKHLYVRPAHISEKLWTQAQRDNPDPANCVPAPVIGFKELSTR------IKLQQEHADKFATYADDMVTQVKEMEKSSRETDVKLAQCRHQHVALFHRLIKLMRKLEVFKNLRKPLHQDEVRLFATLKKIASLLDNPTQFKARMNELMALQAMLKDKPMDEADEGK------LSDHDLQLVFGIMNRQRQGLEHVTKVLTQDLRDVEIMQKAL 631          
The following BLAST results are available for this feature:
BLAST of EWM28545.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585110963|gb|EWM28545.1|0.000e+0100.00hypothetical protein Naga_100009g19 [Nannochlorops... [more]
gi|553185418|ref|XP_005854248.1|0.000e+099.78carbohydratebinding protein [Nannochloropsis gadit... [more]
gi|1173929796|gb|OQR82965.1|2.346e-1323.95carbohydrate-binding protein [Achlya hypogyna][more]
gi|669157986|ref|XP_008614555.1|2.761e-1124.25hypothetical protein SDRG_10348 [Saprolegnia dicli... [more]
gi|758368562|emb|CEP09009.1|5.186e-1025.89hypothetical protein [Parasitella parasitica][more]
gi|698808056|ref|XP_009837057.1|2.162e-922.60hypothetical protein H257_11738 [Aphanomyces astac... [more]
gi|1210520091|dbj|GAX20974.1|2.070e-824.52hypothetical protein FisN_1Lh360 [Fistulifera sola... [more]
gi|1173950379|gb|OQR98346.1|4.002e-822.22carbohydrate-binding protein [Thraustotheca clavat... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2142rna2142Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications