EWM30654.1, cds21 (CDS) Nannochloropsis gaditana

Overview
NameEWM30654.1
Unique Namecds21
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:72655..73758 +
Alignment locationCM002455.1:73850..74155 +
Alignment locationCM002455.1:74295..74831 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30654.1
ProductPhosphorylated CTD interacting factor 1, WW domain protein
Orig transcript idgnl|cribi|Naga_100242g2.5822.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:72655..73758 +
CM002455.1supercontigCM002455.1:73850..74155 +
CM002455.1supercontigCM002455.1:74295..74831 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR022035PCIF1_WW
Homology
BLAST of EWM30654.1 vs. NCBI_GenBank
Match: gi|585113348|gb|EWM30654.1| (Phosphorylated CTD interacting factor 1, WW domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1321.22 bits (3418), Expect = 0.000e+0
Identity = 648/648 (100.00%), Postives = 648/648 (100.00%), Query Frame = 0
Query:    1 MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKVNRRRISRGIV 648
            MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKVNRRRISRGIV
Sbjct:    1 MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKVNRRRISRGIV 648          
BLAST of EWM30654.1 vs. NCBI_GenBank
Match: gi|585113347|gb|EWM30653.1| (Phosphorylated CTD interacting factor 1, WW domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1300.03 bits (3363), Expect = 0.000e+0
Identity = 639/645 (99.07%), Postives = 640/645 (99.22%), Query Frame = 0
Query:    1 MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKVNRRRISR 645
            MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIK     +SR
Sbjct:    1 MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSR 645          
BLAST of EWM30654.1 vs. NCBI_GenBank
Match: gi|553184548|ref|XP_005854108.1| (phosphorylated ctd-interacting, partial [Nannochloropsis gaditana CCMP526] >gi|422294952|gb|EKU22251.1| phosphorylated ctd-interacting, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1147.88 bits (2968), Expect = 0.000e+0
Identity = 562/568 (98.94%), Postives = 563/568 (99.12%), Query Frame = 0
Query:   78 MGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKVNRRRISR 645
            MGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIK     +SR
Sbjct:    1 MGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSR 568          
BLAST of EWM30654.1 vs. NCBI_GenBank
Match: gi|242021221|ref|XP_002431044.1| (Phosphorylated CTD-interacting factor, putative [Pediculus humanus corporis] >gi|212516273|gb|EEB18306.1| Phosphorylated CTD-interacting factor, putative [Pediculus humanus corporis])

HSP 1 Score: 105.916 bits (263), Expect = 4.197e-20
Identity = 76/233 (32.62%), Postives = 108/233 (46.35%), Query Frame = 0
Query:  414 DHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHA--LRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKVNRRRIS 644
            +HPP+   RR   C  +  S+  P RL  +E  +  E +LL+ H   L IN  H QKL+ LY    F                                + + F  R+ CLL RYQA      +S      PP+L  S         A + AL P V++ L  +F V  ECFASP +C +R YCS   +TD +FGS G+  +F+P+TG F A+PP   E+ +AM+    + +S
Sbjct:  394 NHPPIPIMRR-VWCYPIQFSTPCP-RLPNIEFLQEREQALLRYHGDPLAINISHLQKLEQLYRYSCF-----------------------------DDKKFEHFLPRVWCLLKRYQAALGRVSNS------PPALGLS------GAGATQAALAPTVFECLHKMFAVTFECFASPLDCYFRQYCSWFPDTDSYFGSRGTILDFKPITGSFQANPPYCDELTEAMVNHFEKLLS 583          
BLAST of EWM30654.1 vs. NCBI_GenBank
Match: gi|156553336|ref|XP_001601122.1| (PREDICTED: phosphorylated CTD-interacting factor 1 [Nasonia vitripennis])

HSP 1 Score: 94.7449 bits (234), Expect = 1.621e-16
Identity = 63/213 (29.58%), Postives = 92/213 (43.19%), Query Frame = 0
Query:  434 SLSPARLALLEANEALELSLLKGH--ALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKVNRRRIS 644
            SL   RL  +E     E ++L+ H  A+ IN  H  KL+ LY    F                                + + F  R+ C+L RYQ    +                          A + ALP  V++ L  +F V  ECFASP NC +R YCS+  +TD +FGS G F +F+P++G F A+PP   E+++AM+    R +S
Sbjct:  428 SLPTPRLPQIEYLPEREQTMLRFHNDAMCINNTHLAKLEHLYRHNCF-----------------------------DDRKFEMFLPRVWCMLKRYQTYLGSTES----------------------QATQMALPVTVFECLQRMFGVTFECFASPLNCYFRQYCSAFADTDAYFGSRGPFLDFRPISGSFQANPPYCEELMEAMVNHFERLLS 589          
BLAST of EWM30654.1 vs. NCBI_GenBank
Match: gi|695372679|ref|XP_009514873.1| (hypothetical protein PHYSODRAFT_467960 [Phytophthora sojae] >gi|348687784|gb|EGZ27598.1| hypothetical protein PHYSODRAFT_467960 [Phytophthora sojae])

HSP 1 Score: 90.8929 bits (224), Expect = 6.536e-16
Identity = 49/121 (40.50%), Postives = 61/121 (50.41%), Query Frame = 0
Query:  515 FHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAM 635
            F   L CLL RY        DSL       +                 AL    +DVL   F  +MECFASP NCRY  +CS+  +TDC FGSVGSFF+F P +G F A+PP   +V++ M
Sbjct:  160 FESALFCLLLRY--------DSLDGGGFQQA-----------------ALNEECFDVLLKEFDCKMECFASPLNCRYSRFCSAFLDTDCAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRM 255          
BLAST of EWM30654.1 vs. NCBI_GenBank
Match: gi|585112272|gb|EWM29696.1| (Phosphorylated CTD interacting factor 1, WW domain protein [Nannochloropsis gaditana])

HSP 1 Score: 92.0485 bits (227), Expect = 1.051e-15
Identity = 84/296 (28.38%), Postives = 122/296 (41.22%), Query Frame = 0
Query:  345 DPVLPGSSACERDFRLAKCLTSREI---QLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAA-TARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMI 636
            DP+LP         R  + L  RE+       + A  + E L + A+ LL  +             +RAS   +PP +        L     SLS   +   +A   L     K   + +N +HY+KL+AL+ +      + P        L           P  SA +E  FH R+  LL RY +LA  T R                          + A+    +DVL      RMECFASP NC Y  YCS+ ++TD  FGS+G+FF F+P  G + A+PP +  V+  M+
Sbjct:  131 DPILPDPRLNNEHERAGRHLLMRELIEGGASNDTAKRVIEQLNKTAVKLLCRI-------------QRASASLNPPSV-------SLEARWQSLSKIYVHF-DAGRGLYSLRHKSKTVTVNRRHYEKLRALHARFGGMSINRPGIDRSQGNLKH----GKRERPGKSAEEERFFHLRVFLLLLRYSSLAGGTDRGG----------------------GFQGAINEEAFDVLRRHLDCRMECFASPLNCMYARYCSAFQDTDACFGSLGTFFNFRPRQGTYEANPPFSPCVIARMV 379          
BLAST of EWM30654.1 vs. NCBI_GenBank
Match: gi|594054327|ref|XP_006051430.1| (PREDICTED: phosphorylated CTD-interacting factor 1 isoform X1 [Bubalus bubalis])

HSP 1 Score: 91.6633 bits (226), Expect = 1.331e-15
Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = 0
Query:  513 DEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCP--------VADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMI 636
            + F  R+ CLL RYQ LA  A   L   +  P  P + P+ P              + +LP  V++ L  LF V  ECFASP NC +R YCS+  +TD +FGS G   +F PL+G F A+PP   E++ AM+
Sbjct:  462 ERFLPRVWCLLRRYQVLAGAAGGGLTRRAGRP--PEAEPAAPQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFSPLSGSFEANPPFCEELMDAMV 591          
BLAST of EWM30654.1 vs. NCBI_GenBank
Match: gi|742097453|ref|XP_010833343.1| (PREDICTED: phosphorylated CTD-interacting factor 1 isoform X1 [Bison bison bison] >gi|742097457|ref|XP_010833344.1| PREDICTED: phosphorylated CTD-interacting factor 1 isoform X1 [Bison bison bison])

HSP 1 Score: 91.6633 bits (226), Expect = 1.354e-15
Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = 0
Query:  513 DEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCP--------VADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMI 636
            + F  R+ CLL RYQ LA  A   L   +  P  P + P+ P              + +LP  V++ L  LF V  ECFASP NC +R YCS+  +TD +FGS G   +F PL+G F A+PP   E++ AM+
Sbjct:  462 ERFLPRVWCLLRRYQVLAGAAGGGLTRRAGRP--PEAEPAAPQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFSPLSGSFEANPPFCEELMDAMV 591          
BLAST of EWM30654.1 vs. NCBI_GenBank
Match: gi|803265634|ref|XP_011992551.1| (PREDICTED: phosphorylated CTD-interacting factor 1 isoform X2 [Ovis aries musimon] >gi|803265636|ref|XP_011992552.1| PREDICTED: phosphorylated CTD-interacting factor 1 isoform X2 [Ovis aries musimon] >gi|803265638|ref|XP_011992553.1| PREDICTED: phosphorylated CTD-interacting factor 1 isoform X2 [Ovis aries musimon] >gi|803265640|ref|XP_011992554.1| PREDICTED: phosphorylated CTD-interacting factor 1 isoform X2 [Ovis aries musimon] >gi|1062897064|ref|XP_017913435.1| PREDICTED: phosphorylated CTD-interacting factor 1 isoform X1 [Capra hircus] >gi|1062897070|ref|XP_017913436.1| PREDICTED: phosphorylated CTD-interacting factor 1 isoform X1 [Capra hircus] >gi|1062897075|ref|XP_017913437.1| PREDICTED: phosphorylated CTD-interacting factor 1 isoform X1 [Capra hircus])

HSP 1 Score: 91.6633 bits (226), Expect = 1.452e-15
Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = 0
Query:  513 DEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCP--------VADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMI 636
            + F  R+ CLL RYQ LA  A   L   +  P  P + P+ P              + +LP  V++ L  LF V  ECFASP NC +R YCS+  +TD +FGS G   +F PL+G F A+PP   E++ AM+
Sbjct:  462 ERFLPRVWCLLRRYQVLAGAAGGGLTRRAGRP--PEAEPAAPQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFSPLSGSFEANPPFCEELMDAMV 591          
The following BLAST results are available for this feature:
BLAST of EWM30654.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113348|gb|EWM30654.1|0.000e+0100.00Phosphorylated CTD interacting factor 1, WW domain... [more]
gi|585113347|gb|EWM30653.1|0.000e+099.07Phosphorylated CTD interacting factor 1, WW domain... [more]
gi|553184548|ref|XP_005854108.1|0.000e+098.94phosphorylated ctd-interacting, partial [Nannochlo... [more]
gi|242021221|ref|XP_002431044.1|4.197e-2032.62Phosphorylated CTD-interacting factor, putative [P... [more]
gi|156553336|ref|XP_001601122.1|1.621e-1629.58PREDICTED: phosphorylated CTD-interacting factor 1... [more]
gi|695372679|ref|XP_009514873.1|6.536e-1640.50hypothetical protein PHYSODRAFT_467960 [Phytophtho... [more]
gi|585112272|gb|EWM29696.1|1.051e-1528.38Phosphorylated CTD interacting factor 1, WW domain... [more]
gi|594054327|ref|XP_006051430.1|1.331e-1539.39PREDICTED: phosphorylated CTD-interacting factor 1... [more]
gi|742097453|ref|XP_010833343.1|1.354e-1539.39PREDICTED: phosphorylated CTD-interacting factor 1... [more]
gi|803265634|ref|XP_011992551.1|1.452e-1539.39PREDICTED: phosphorylated CTD-interacting factor 1... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna21rna21Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications