EWM28614.1, cds2081 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28614.1 vs. NCBI_GenBank
Match: gi|585111032|gb|EWM28614.1| (PUB domain protein [Nannochloropsis gaditana]) HSP 1 Score: 749.584 bits (1934), Expect = 0.000e+0 Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0
Query: 1 MEFRNTLATLESIETRLTCIEATQDQPEVLASEAGALEELHSDLTTSLSRTFAKLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQARLAREEAAAARERQQEEAARAQAAAKAAETRRLEMEANQRALLHREAALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQQEEARVKRL 374
MEFRNTLATLESIETRLTCIEATQDQPEVLASEAGALEELHSDLTTSLSRTFAKLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQARLAREEAAAARERQQEEAARAQAAAKAAETRRLEMEANQRALLHREAALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQQEEARVKRL
Sbjct: 1 MEFRNTLATLESIETRLTCIEATQDQPEVLASEAGALEELHSDLTTSLSRTFAKLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQARLAREEAAAARERQQEEAARAQAAAKAAETRRLEMEANQRALLHREAALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQQEEARVKRL 374
BLAST of EWM28614.1 vs. NCBI_GenBank
Match: gi|298710109|emb|CBJ31822.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 95.9005 bits (237), Expect = 1.208e-18 Identity = 102/363 (28.10%), Postives = 166/363 (45.73%), Query Frame = 0
Query: 2 EFRNTLATLESIETRLTCI--EATQDQPEVLASEAGALEELHSDLTTSLSRTFAKLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQARLAREEAAAARERQQEEAARAQAAAKAAETRRLEMEANQRAL------LHREAALAREKKKK--ERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWY 354
EF+ T L S+E L + +++ PE LA+ + A L LS+ +K ++R E DP++ YG++M A+V +++ +LL+R+ +L+ + A E+ + +AR RE ERQQ+E AR + AE R A Q L L EAA +RE++++ E++E A D E A++ L S+ GA G E+ L + ACGG+ + K AV L + N+ ++PE+ F+RI + +F+ LG + G + L+++GF++Q EE G VL+M EPD+ + WT WY
Sbjct: 3 EFKRTAEDLASLEELLGSLGSDSSTPAPEKLATFSTA----KGRLEDELSKKVSKFERRLNETDPVSGAPRYGESMTAKVVALGAKHQALLERLPQLE-AEITAAVSQHESREAVSAEEAR-KRE-----VERQQQEDARERVRLAEAEEERRRAVATQSILDRERERLATEAAQSREERQRAAEQEEARLAEDKQTREREAQE--LASSVAVGAAGVEDGLRRIDDACGGKPAEK-KAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRF-EGGIQILLSSGFRMQVEE--------------------------------------------GQTVLVMNEPDLSEDMDGWTEWY 306
BLAST of EWM28614.1 vs. NCBI_GenBank
Match: gi|953502464|emb|CEG36395.1| (Dynein light chain [Plasmopara halstedii]) HSP 1 Score: 86.2705 bits (212), Expect = 5.293e-15 Identity = 89/370 (24.05%), Postives = 159/370 (42.97%), Query Frame = 0
Query: 4 RNTLATLESIETRLTCIEATQDQPEVLASEAGALEELHSDLTTSLSRTFAKLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQARLAREEAAAARERQQEEAARAQAAAKAAETRRLEMEANQRALLHRE--------AALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQ 365
R +A +E++E+RL ++ + + + ++ T K + RC +DP+T+ +G M A+V + RY ++ + E + P+ +L Q +EA A R+++ EE RA A + +RLE EA +R +L R A+A +KK+++R+ + E + + L SI PG +G E A+ LR + G EA ++++V L V NI P+ AF++I + HF + LG + G CL+A GF+ E +G + E V +M EPD+ + W+ W++ K +++ ++
Sbjct: 86 RRAIANVETLESRLLELQNALAADNINRVFQDTFSFVLLAINGEMNATMDKFRARCSMIDPVTKNPRFGPKMMAKVKDMLRRYDNVKLAIQE--DTPLRLQIE----TKLNDLKQHEEEAKEAEAIRKKEAEEDQRAAERAAEQDGKRLEEEAQEREILRRRQEELRIQRLAVAAQKKREQRERERLEEEQQRQEEQKKRELLNASISPGKKGLELAIDLLRESTGSEAL--FRQSVEKLLAVVNNICKSPDNTAFRQIPKDNMHFHADLGQFT-GGYQCLLALGFK-------EMQQGDENEPR---------------------------------FVFVMEEPDLSEDLDAWSTWFDGLKEMQNFVE 406
BLAST of EWM28614.1 vs. NCBI_GenBank
Match: gi|568023993|gb|ETL98037.1| (hypothetical protein L917_04811 [Phytophthora parasitica]) HSP 1 Score: 85.5001 bits (210), Expect = 5.496e-15 Identity = 95/388 (24.48%), Postives = 163/388 (42.01%), Query Frame = 0
Query: 2 EFRNTLATLESIETRLTCIEATQDQPEVLASEAG--ALEELHSDLTTSLS----RTFAKLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQAR-LAREEAAAARERQQEEAARAQAAAKAAETRRLEMEANQRALLHREA-----------------ALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQ 365
EFR A ++++E RL ++ + +A + LEE S + T++ K + RC VDP+T + +G M A+V + RY ++ ++ ++ P+ RL ES+ + LA+++ RQQEE AR + A A +L E + LLH A+A +KK+++R++ + E L SI G G E+A+ LR E +++++ L V NI PE AAF+ I + HF + LG + PG CL+A GF+ E ++G+ P V ++ EPD+ + W+ W++ K ++ L++
Sbjct: 3 EFRQATAHVDALEARLAQLQ------QCIADDNANDYLEENFSFILTAIDGDVDVLMEKFRARCSMVDPVTNQLRFGPKMLAKVQDLLHRYDNI--KLAMEEDAPL----------RLQVESKLKQLAQQQVI----RQQEEIAREKEARDAQRAAKLANEQEKERLLHEAREREAEREREEQERIQALAIAAQKKREQREKERAEEERQRQLEEQERERLNASIPHGKEGLEKAIAMLREGTSNETL--FRQSLQKLLAVVSNICKSPENAAFRHIPKDNVHFHADLGQY-PGGHQCLLAMGFK---------------------------------------ELQQGDETQPRT-VFVLEEPDLSEDLDAWSTWFDELKELQSLVE 325
BLAST of EWM28614.1 vs. NCBI_GenBank
Match: gi|570332394|gb|ETO80342.1| (hypothetical protein F444_05137 [Phytophthora parasitica P1976]) HSP 1 Score: 83.9593 bits (206), Expect = 1.502e-14 Identity = 95/388 (24.48%), Postives = 162/388 (41.75%), Query Frame = 0
Query: 2 EFRNTLATLESIETRLTCIEATQDQPEVLASEAG--ALEELHSDLTTSLS----RTFAKLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQAR-LAREEAAAARERQQEEAARAQAAAKAAETRRLEMEANQRALLHREA-----------------ALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQ 365
EFR A ++++E RL ++ + +A + LEE S + T++ K + RC VDP+T + +G M A+V + RY ++ ++ ++ P+ RL ES+ + LA+++ RQQEE AR + A A L E + LLH A+A +KK+++R++ + E L SI G G E+A+ LR E +++++ L V NI PE AAF+ I + HF + LG + PG CL+A GF+ E ++G+ P V ++ EPD+ + W+ W++ K ++ L++
Sbjct: 3 EFRQATAHVDALEARLAQLQ------QCIADDNANDYLEENFSFILTAIDGDVDVLMEKFRARCSMVDPVTNQLRFGPKMLAKVQDLLHRYDNI--KLAMEEDAPL----------RLQVESKLKQLAQQQVI----RQQEEIAREKEARDAQRAAELANEQEKERLLHEAREREAEREREEQERIQALAIAAQKKREQREKERAEEERQRQLEEQERERLNASIPHGKEGLEKAIAMLREGTSNETL--FRQSLQKLLAVVSNICKSPENAAFRHIPKDNVHFHADLGQY-PGGHQCLLAMGFK---------------------------------------ELQQGDETQPRT-VFVLEEPDLSEDLDAWSTWFDELKELQSLVE 325
BLAST of EWM28614.1 vs. NCBI_GenBank
Match: gi|675187149|ref|XP_008902459.1| (hypothetical protein PPTG_09307 [Phytophthora parasitica INRA-310] >gi|566028674|gb|ETI51585.1| hypothetical protein F443_05100 [Phytophthora parasitica P1569] >gi|567966014|gb|ETK91473.1| hypothetical protein L915_04964 [Phytophthora parasitica] >gi|567994726|gb|ETL44878.1| hypothetical protein L916_04912 [Phytophthora parasitica] >gi|568054430|gb|ETM51211.1| hypothetical protein L914_04916 [Phytophthora parasitica] >gi|568097754|gb|ETN12496.1| hypothetical protein PPTG_09307 [Phytophthora parasitica INRA-310] >gi|570956359|gb|ETP21360.1| hypothetical protein F441_05102 [Phytophthora parasitica CJ01A1] >gi|570991574|gb|ETP49283.1| hypothetical protein F442_05159 [Phytophthora parasitica P10297]) HSP 1 Score: 83.1889 bits (204), Expect = 2.988e-14 Identity = 95/388 (24.48%), Postives = 162/388 (41.75%), Query Frame = 0
Query: 2 EFRNTLATLESIETRLTCIEATQDQPEVLASEAG--ALEELHSDLTTSLS----RTFAKLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQAR-LAREEAAAARERQQEEAARAQAAAKAAETRRLEMEANQRALLHREA-----------------ALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQ 365
EFR A ++++E RL ++ + +A + LEE S + T++ K + RC VDP+T + +G M A+V + RY ++ ++ ++ P+ RL ES+ + LA+++ RQQEE AR + A A L E + LLH A+A +KK+++R++ + E L SI G G E+A+ LR E +++++ L V NI PE AAF+ I + HF + LG + PG CL+A GF+ E ++G+ P V ++ EPD+ + W+ W++ K ++ L++
Sbjct: 3 EFRQATAHVDALEARLAQLQ------QCIADDNANDYLEENFSFILTAIDGDVDVLMEKFRARCSMVDPVTNQLRFGPKMLAKVQDLLHRYDNI--KLAMEEDAPL----------RLQVESKLKQLAQQQVI----RQQEEIAREKEARDAQRAAELANEQEKERLLHEAREREAEREREEQERIQALAIAAQKKREQREKERAEEERQRQLEEQERERLNASIPHGKEGLEKAIAMLREGTSNETL--FRQSLQKLLAVVSNICKSPENAAFRHILKDNVHFHADLGQY-PGGHQCLLAMGFK---------------------------------------ELQQGDETQPRT-VFVLEEPDLSEDLDAWSTWFDELKELQSLVE 325
BLAST of EWM28614.1 vs. NCBI_GenBank
Match: gi|568023994|gb|ETL98038.1| (hypothetical protein, variant 1 [Phytophthora parasitica]) HSP 1 Score: 82.4185 bits (202), Expect = 5.076e-14 Identity = 84/305 (27.54%), Postives = 138/305 (45.25%), Query Frame = 0
Query: 2 EFRNTLATLESIETRLTCIEATQDQPEVLASEAG--ALEELHSDLTTSLS----RTFAKLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQAR-LAREEAAAARERQQEEAARAQAAAKAAETRRLEMEANQRALLHREA-----------------ALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQ 282
EFR A ++++E RL ++ + +A + LEE S + T++ K + RC VDP+T + +G M A+V + RY ++ ++ ++ P+ RL ES+ + LA+++ RQQEE AR + A A +L E + LLH A+A +KK+++R++ + E L SI G G E+A+ LR E +++++ L V NI PE AAF+ I + HF + LG + PG CL+A GF+
Sbjct: 3 EFRQATAHVDALEARLAQLQ------QCIADDNANDYLEENFSFILTAIDGDVDVLMEKFRARCSMVDPVTNQLRFGPKMLAKVQDLLHRYDNI--KLAMEEDAPL----------RLQVESKLKQLAQQQVI----RQQEEIAREKEARDAQRAAKLANEQEKERLLHEAREREAEREREEQERIQALAIAAQKKREQREKERAEEERQRQLEEQERERLNASIPHGKEGLEKAIAMLREGTSNETL--FRQSLQKLLAVVSNICKSPENAAFRHIPKDNVHFHADLGQY-PGGHQCLLAMGFK 282
BLAST of EWM28614.1 vs. NCBI_GenBank
Match: gi|698788930|ref|XP_009827497.1| (hypothetical protein H257_04606 [Aphanomyces astaci] >gi|574117344|gb|ETV82826.1| hypothetical protein H257_04606 [Aphanomyces astaci]) HSP 1 Score: 82.0333 bits (201), Expect = 8.716e-14 Identity = 94/332 (28.31%), Postives = 146/332 (43.98%), Query Frame = 0
Query: 40 LHSDLTTSLSRTFAKLQKRCQEV---DPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQARLAREEAAAARERQQEEAARAQAAAKAAETRRLEM-EANQRALLHREA-ALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINL-RHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQ 365
L LT S K+QK ++ DPIT YG AM+ ++ R S++ + + KA +N +L ++Q L +A ++ Q+ AQ A E + ++ EA A + REA A A + + ER + + AEA+ + L SI G G E AL L RH AT ++ A TL + + NI A P+ A F+ I+ HF +LG + PG L CL+A GF+ R QG S + DGA P + ++ EPD+ + + W+ W++T K +RD ++
Sbjct: 47 LLQQLTASQPDLDEKIQKFVDKLAWRDPITNDPRYGPAMQEKILAVAGRISAVKEAAAAATDIIEPKASVALQNQQLRKQAQDDL---DAECLKKEQERACIEAQQVIAAQELLQKQLKEAEIAAQIEREALAKAAQAVRDERARVQAEKERQDAEAQRQQDELNQSIPVGLAGLEVALGLLGRHFQSDAAT--FRAAKRTLLVLLKNICAAPDNATFRHINAANEHFHRELGQF-PGGLQCLLALGFRPLR----------QG--STSDDGA------------------------PAPVIYVLEEPDLAQDLDAWSCWFDTLKLMRDYVE 336
BLAST of EWM28614.1 vs. NCBI_GenBank
Match: gi|301100794|ref|XP_002899486.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103794|gb|EEY61846.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 80.4925 bits (197), Expect = 8.723e-14 Identity = 80/314 (25.48%), Postives = 131/314 (41.72%), Query Frame = 0
Query: 54 KLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQARLAREEAAAARE--RQQEEAARAQAAAKAAETRRLEMEANQRALLHREAALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQ 365
K + RC VDPIT + +G M A+V + RY +NVRL E A L EA E ++QE+ Q A + ++ E + +AL A+A +KK+++R + DH E L SI G E A+ LR G ++ +++++ L V NI PE AAF+ I + AHF + LG + PG CL+A GF+ + QG++++ + V ++ EPD+ + W+ W++ K ++ L++
Sbjct: 4 KFRARCSMVDPITNQPRFGPKMLAKVQDLLHRY----------------------DNVRLTLEEDAPLPVNEAQRVAELAKEQEKQRLVQEAEEREVEQQREEQERIQAL-----AVAAQKKREQRVQERAEQDHQRQLEEQERERLNASIPHGKEELEMAIAMLRE--GTDSETLFRQSLQKLLAVVRNICQSPENAAFRHIPRDNAHFHADLGQY-PGGHQCLLAMGFK----------ELQQGDETQPRN------------------------------VFVLEEPDLSEDLDAWSSWFDELKELQSLVE 247
BLAST of EWM28614.1 vs. NCBI_GenBank
Match: gi|568023995|gb|ETL98039.1| (hypothetical protein, variant 2 [Phytophthora parasitica]) HSP 1 Score: 80.8777 bits (198), Expect = 9.799e-14 Identity = 82/330 (24.85%), Postives = 138/330 (41.82%), Query Frame = 0
Query: 54 KLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQAR-LAREEAAAARERQQEEAARAQAAAKAAETRRLEMEANQRALLHREA-----------------ALAREKKKKERDEREQAADHAWAEARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADGAGQEGSSLREDGGSGVEGKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQ 365
K + RC VDP+T + +G M A+V + RY ++ ++ ++ P+ RL ES+ + LA+++ RQQEE AR + A A +L E + LLH A+A +KK+++R++ + E L SI G G E+A+ LR E +++++ L V NI PE AAF+ I + HF + LG + PG CL+A GF+ E ++G+ P V ++ EPD+ + W+ W++ K ++ L++
Sbjct: 3 KFRARCSMVDPVTNQLRFGPKMLAKVQDLLHRYDNI--KLAMEEDAPL----------RLQVESKLKQLAQQQVI----RQQEEIAREKEARDAQRAAKLANEQEKERLLHEAREREAEREREEQERIQALAIAAQKKREQREKERAEEERQRQLEEQERERLNASIPHGKEGLEKAIAMLREGTSNETL--FRQSLQKLLAVVSNICKSPENAAFRHIPKDNVHFHADLGQY-PGGHQCLLAMGFK---------------------------------------ELQQGDETQPRT-VFVLEEPDLSEDLDAWSTWFDELKELQSLVE 273 The following BLAST results are available for this feature:
BLAST of EWM28614.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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