EWM28536.1, cds2076 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28536.1 vs. NCBI_GenBank
Match: gi|585110954|gb|EWM28536.1| (pyridoxal biosynthesis protein pdx2 [Nannochloropsis gaditana]) HSP 1 Score: 576.63 bits (1485), Expect = 0.000e+0 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query: 1 MAESVASGPCIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQTASKK 285
MAESVASGPCIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQTASKK
Sbjct: 1 MAESVASGPCIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQTASKK 285
BLAST of EWM28536.1 vs. NCBI_GenBank
Match: gi|553186959|ref|XP_005854524.1| (glutamine amidotransferase [Nannochloropsis gaditana CCMP526] >gi|422294534|gb|EKU21834.1| glutamine amidotransferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 567.77 bits (1462), Expect = 0.000e+0 Identity = 281/285 (98.60%), Postives = 282/285 (98.95%), Query Frame = 0
Query: 1 MAESVASGPCIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQTASKK 285
MAESVASGPCIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDK+LDGLIIPGGESTAMAIVG RHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAP P VPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQTASKK
Sbjct: 1 MAESVASGPCIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKNLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPSPLVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQTASKK 285
BLAST of EWM28536.1 vs. NCBI_GenBank
Match: gi|298710695|emb|CBJ32119.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 237.654 bits (605), Expect = 1.438e-73 Identity = 139/292 (47.60%), Postives = 187/292 (64.04%), Query Frame = 0
Query: 10 CIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLG-------SRGPVSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSA-----------PPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQTAS 283
IGILALQGAF EH ++ +LGA EVRLP + + LDG+++PGGESTAMA++G R G+FP+LK +V G+P+WGTCAGMILLS+ A+MQK GGQ L+GGL+VE+CRN+FG+Q SSFEV L A GS+G ++ P AVFIRAPA+LEAGPGV+VL +V++ PC +A V + Q KQ E + + A P PS A E G G G S GEK EV+VA+++G+++ TAFHPELT + WH+YF+ + + + +
Sbjct: 22 TIGILALQGAFAEHSSLLSKLGADVREVRLPHEFE-GLDGIVLPGGESTAMALIGERWGVFPRLKQWVSEGRPVWGTCAGMILLSDHALMQKKGGQSLVGGLNVEICRNYFGAQTSSFEVPLDTS-ALETGSVGKKDGGSANKNPYPAVFIRAPAVLEAGPGVDVLCKVRSRPCNKAV----TVMKAQLKQEEADDRDDDTRRAKRRRLAAFFVEPNPSTAAVAGEGGGGGSGASSGEKEA--------PEVIVAIRKGNIVGTAFHPELTNDSRWHEYFVRIVKEAVSSGT 299
BLAST of EWM28536.1 vs. NCBI_GenBank
Match: gi|460411447|ref|XP_004251122.1| (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Solanum lycopersicum]) HSP 1 Score: 207.608 bits (527), Expect = 6.650e-63 Identity = 120/270 (44.44%), Postives = 154/270 (57.04%), Query Frame = 0
Query: 10 CIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVS--AVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQ 277
+G+LALQG+F EH +++ LG + VEVR P+ L ++ LIIPGGEST MA + H +FP L+ FVQ GKP+WGTCAG+I L+N+A QK GGQ LIGGLD V RNFFGSQ+ SFE L + A GP S AVFIRAPAIL+ GP VEVL+ + + +E + Q+EE E E G+ +V+VAV+QG+LLATAFHPELT + WH YF+ M +
Sbjct: 2 VVGVLALQGSFNEHIAVLKRLGVKGVEVRKPEQL-LNVSSLIIPGGESTTMAKLAELHNLFPALREFVQMGKPVWGTCAGLIFLANKATGQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAEDG----GPPSFRAVFIRAPAILDVGPDVEVLSDIPLS-------AIETLNSNPAIQKEE-------------------------------------ESTESGK-KVIVAVKQGNLLATAFHPELTADTRWHSYFLKMVPE 221
BLAST of EWM28536.1 vs. NCBI_GenBank
Match: gi|970062581|ref|XP_015058190.1| (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Solanum pennellii]) HSP 1 Score: 207.223 bits (526), Expect = 1.083e-62 Identity = 120/270 (44.44%), Postives = 153/270 (56.67%), Query Frame = 0
Query: 10 CIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVS--AVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQ 277
+G+LALQG+F EH +++ LG + VEVR P+ L ++ LIIPGGEST MA + H +FP L+ FVQ GKP+WGTCAG+I L+N+A QK GGQ LIGGLD V RNFFGSQ+ SFE L + A GP S AVFIRAPAIL+ GP VEVL+ + + +E + Q EE E E G+ +V+VAV+QG+LLATAFHPELT + WH YF+ M +
Sbjct: 2 VVGVLALQGSFNEHIAVLKRLGVKGVEVRKPEQL-LNVSSLIIPGGESTTMAKLAELHNLFPALREFVQMGKPVWGTCAGLIFLANKATGQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAEDG----GPPSFRAVFIRAPAILDVGPDVEVLSDIPLS-------AIETLNSNPAIQNEE-------------------------------------ESTESGK-KVIVAVKQGNLLATAFHPELTADTRWHSYFLKMVPE 221
BLAST of EWM28536.1 vs. NCBI_GenBank
Match: gi|470117766|ref|XP_004295020.1| (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 isoform X2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 206.838 bits (525), Expect = 1.317e-62 Identity = 123/278 (44.24%), Postives = 158/278 (56.83%), Query Frame = 0
Query: 10 CIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQL-EGAAAAGSLGSRGP--VSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARG-RGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQTAS 283
+G+LALQG++ EH +++ LG + VE++ P+ L+ +L LIIPGGEST MA + H +FP L+ FV+ GKP+WGTCAG+I L+NRA QK GGQ L+GGLD V RNFFGSQ+ SFE L + E A+ G GP VFIRAPAILE GPGVEVLA P P+ S G G + SG EK +V+VAV+QG+LLATAFHPELT + WH YF+ M ++ +S
Sbjct: 3 LVGVLALQGSYNEHIAVLRRLGVKGVEIKKPEQLE-NLASLIIPGGESTTMAKLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANRATGQKIGGQELVGGLDCMVHRNFFGSQIQSFETELSVPELASKEG-----GPEVFRGVFIRAPAILEVGPGVEVLA-----------------------------------DYPVPANKWKNSNPGVEGDKENSGSEK-----------KVIVAVRQGNLLATAFHPELTADTRWHSYFLKMATETEGASS 228
BLAST of EWM28536.1 vs. NCBI_GenBank
Match: gi|1027855549|ref|NP_001311616.1| (probable pyridoxal 5'-phosphate synthase subunit PDX2 [Nicotiana tabacum] >gi|1025207695|ref|XP_016478753.1| PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Nicotiana tabacum] >gi|1025386627|ref|XP_016434079.1| PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Nicotiana tabacum] >gi|46399273|gb|AAS92257.1| putative pyridoxine biosynthesis protein [Nicotiana tabacum]) HSP 1 Score: 206.453 bits (524), Expect = 2.122e-62 Identity = 119/268 (44.40%), Postives = 151/268 (56.34%), Query Frame = 0
Query: 10 CIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVS--AVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMC 275
+G+LALQG+F EH ++ LG + VEVR P+ L +++ LIIPGGEST MA + H +FP L+ FVQ GKP+WGTCAG+I L+N+A QK GGQ LIGGLD V RNFFGSQ+ SFE L + A GP S AVFIRAPAIL+ GP VEVLA + + VE + Q+E E + + +V+VAV+QG+LLATAFHPELT + WH YF+ M
Sbjct: 2 VVGVLALQGSFNEHIAALKRLGVKGVEVRKPEQL-QNVSSLIIPGGESTTMAKLAELHNLFPALREFVQLGKPVWGTCAGLIFLANKATGQKTGGQELIGGLDCTVHRNFFGSQIQSFETELPIPQIVAK----EGGPPSFRAVFIRAPAILDVGPDVEVLADIPLS-------AVETINSNHAIQKE--------------------------------------EDSTESQKKVIVAVKQGNLLATAFHPELTADTRWHSYFLKML 219
BLAST of EWM28536.1 vs. NCBI_GenBank
Match: gi|720027858|ref|XP_010264707.1| (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Nelumbo nucifera]) HSP 1 Score: 206.068 bits (523), Expect = 2.231e-62 Identity = 121/276 (43.84%), Postives = 154/276 (55.80%), Query Frame = 0
Query: 10 CIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQTASKK 285
+G+LALQG+F EH ++ +G + VE+R P+ L +++D LIIPGGEST MA + H +FP LK FV+ GKP+WGTCAG+I L+N+AI QK GGQ LIGGLD V RNFFGSQ+ SFE L + AA G VFIRAPAILEAGP VEVLA P P+ S+ A G ++ E + +V+VAV+QG+LL TAFHPELT + WH YF+ M + Q K
Sbjct: 2 AVGVLALQGSFNEHIAALRRIGVKGVEIRKPEQL-QNVDALIIPGGESTTMAKLAEYHNLFPALKEFVKMGKPVWGTCAGLIFLANKAIGQKEGGQELIGGLDCTVHRNFFGSQIQSFEAELPVPELAA--KEGGHESFRGVFIRAPAILEAGPEVEVLA-----------------------------------DYPVPAKKLTDSKFAA------GNQQETTE----SKGKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMGKSGQQNGSK 229
BLAST of EWM28536.1 vs. NCBI_GenBank
Match: gi|565346200|ref|XP_006340154.1| (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Solanum tuberosum]) HSP 1 Score: 206.453 bits (524), Expect = 2.290e-62 Identity = 120/270 (44.44%), Postives = 153/270 (56.67%), Query Frame = 0
Query: 10 CIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVS--AVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQ 277
+G+LALQG+F EH +++ LG + VEVR P+ L ++ LIIPGGEST MA + H +FP L+ FVQ GKP+WGTCAG+I L+NRA QK GGQ LIGGLD V RNFFGSQ+ SFE L + A GP S AVFIRAPAIL+ GP VEVLA + + +E + +EE + E G+ +V+VAV+QG+LLATAFHPELT + WH YF+ M +
Sbjct: 2 VVGVLALQGSFNEHIAVLKRLGVKGVEVRKPEQL-LNVSSLIIPGGESTTMAKLAELHNLFPALREFVQMGKPVWGTCAGLIFLANRATGQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAE----EGGPPSFRAVFIRAPAILDVGPDVEVLADIPLS-------AIETINSNPAIPKEE-------------------------------------DSTESGK-KVIVAVKQGNLLATAFHPELTADTRWHSYFLKMVPE 221
BLAST of EWM28536.1 vs. NCBI_GenBank
Match: gi|470117764|ref|XP_004295019.1| (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 isoform X1 [Fragaria vesca subsp. vesca] >gi|764564231|ref|XP_011461705.1| PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 isoform X1 [Fragaria vesca subsp. vesca]) HSP 1 Score: 206.068 bits (523), Expect = 2.881e-62 Identity = 122/278 (43.88%), Postives = 159/278 (57.19%), Query Frame = 0
Query: 10 CIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQL-EGAAAAGSLGSRGP--VSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDG-RMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQTAS 283
+G+LALQG++ EH +++ LG + VE++ P+ L+ +L LIIPGGEST MA + H +FP L+ FV+ GKP+WGTCAG+I L+NRA QK GGQ L+GGLD V RNFFGSQ+ SFE L + E A+ G GP VFIRAPAILE GPGVEVLA P P+ S G G+K + +E G +V+VAV+QG+LLATAFHPELT + WH YF+ M ++ +S
Sbjct: 3 LVGVLALQGSYNEHIAVLRRLGVKGVEIKKPEQLE-NLASLIIPGGESTTMAKLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANRATGQKIGGQELVGGLDCMVHRNFFGSQIQSFETELSVPELASKEG-----GPEVFRGVFIRAPAILEVGPGVEVLA-----------------------------------DYPVPANKWKNSNPGVE------GDKDWVFQENSGSEKKVIVAVRQGNLLATAFHPELTADTRWHSYFLKMATETEGASS 233 The following BLAST results are available for this feature:
BLAST of EWM28536.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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