EWM28583.1, cds2071 (CDS) Nannochloropsis gaditana

Overview
NameEWM28583.1
Unique Namecds2071
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:836308..836401 -
Alignment locationCM002458.1:835600..836201 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28583.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g82.626.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:836308..836401 -
CM002458.1supercontigCM002458.1:835600..836201 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|585111001|gb|EWM28583.1| (hypothetical protein Naga_100009g82 [Nannochloropsis gaditana])

HSP 1 Score: 459.529 bits (1181), Expect = 1.674e-163
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MRPRVVAFALGLLGWVEGFRLPRAPTSPASSSVGFAGFTAVGRSSFQSKNSASDDNSGGPANSTFKKRKRKVPLPAELLQDNVNSGGSKDPPTSSVNIQDATSSSPISPGEVDLQERLQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEMNEKKKG 231
            MRPRVVAFALGLLGWVEGFRLPRAPTSPASSSVGFAGFTAVGRSSFQSKNSASDDNSGGPANSTFKKRKRKVPLPAELLQDNVNSGGSKDPPTSSVNIQDATSSSPISPGEVDLQERLQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEMNEKKKG
Sbjct:    1 MRPRVVAFALGLLGWVEGFRLPRAPTSPASSSVGFAGFTAVGRSSFQSKNSASDDNSGGPANSTFKKRKRKVPLPAELLQDNVNSGGSKDPPTSSVNIQDATSSSPISPGEVDLQERLQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEMNEKKKG 231          
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|168062836|ref|XP_001783383.1| (predicted protein [Physcomitrella patens] >gi|162665133|gb|EDQ51828.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 74.7146 bits (182), Expect = 1.145e-12
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 0
Query:  118 LQQDIVRFRKKEREVQALEG-DVTGFASLADK------AGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTL 210
            L++DI RF+KK    + +E  + TG AS + K        S+++KVLVADFF +L  L W V G+  KS L  +T+ID +  +W  + QPALG+ MAG +
Sbjct:  109 LEEDIARFQKKRDLEKRIENFNRTGNASESGKPEGDGMVKSLVEKVLVADFFFILFILAWLVAGLGEKSLLQSSTLIDSWLPLWPTLFQPALGVFMAGAI 208          
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|298710393|emb|CBJ25457.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.485 bits (184), Expect = 2.787e-12
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 0
Query:  118 LQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEMNEKK 229
            L  DI RFR+ E       G+     S+A  A  I+  ++  DFFVV+AF+ WF+ GVV     ++  ++D+F D W PV+QPALG+LM GT+  G ++ +     + ++ +
Sbjct:  268 LGADIERFRRAENRQPETAGE-----SIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGGSGNDEDDNR 374          
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|1189390128|gb|OSX77093.1| (hypothetical protein BU14_0161s0015 [Porphyra umbilicalis])

HSP 1 Score: 71.2478 bits (173), Expect = 1.948e-11
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 0
Query:  109 PGEVDLQERLQQDIVRFRKKEREVQALEGDVTGFA---SLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQ 223
            PGE  ++  L +D+  FR ++R  +  +          S   + G  +  +LVADFFVV  FL W V  +V   A ++  ++D +  +W  VIQP LG+LM GT+  G L+ V S+ +
Sbjct:  107 PGE-SVESTLARDLAGFRTRQRRREGKDAAAAVEPEAESTLARVGKTVNTLLVADFFVVCFFLAWLVVALVPHFAYHNEVLLDAWLSLWTLVIQPLLGVLMLGTIVAGTLSYVQSKEE 223          
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|971509349|dbj|GAQ88867.1| (hypothetical protein KFL_004650120 [Klebsormidium nitens])

HSP 1 Score: 66.6254 bits (161), Expect = 4.081e-10
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 0
Query:  118 LQQDIVRFRKKEREVQALEGDVTG----------------------FASLADKA-GSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQE 224
            LQQD+ R R  E + +AL+    G                      F+  A +A  S++  +LVADFF ++  L W + GVV + AL+   ++D +  +W  V QPA+G+LMAGT+  G +++++    E
Sbjct:   50 LQQDLERIRGLEDKDRALKAGRDGPGDRLSSDEFQEAKSFFAATKEFSDNATRATKSVIDTILVADFFFIILVLLWLIAGVVERQALDSTKLLDVWLPLWGTVFQPAIGVLMAGTIVSGTISTLSQNPDE 179          
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|545357151|ref|XP_005644241.1| (hypothetical protein COCSUDRAFT_54585 [Coccomyxa subellipsoidea C-169] >gi|384246206|gb|EIE19697.1| hypothetical protein COCSUDRAFT_54585 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 64.6994 bits (156), Expect = 5.462e-10
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 0
Query:  136 EGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGAL 215
            E D++  A + D    +L KVL+ DFF V A L W V GV  +++L ++ ++D +  +W  V QPA+G+LM G L  GA+
Sbjct:   25 EKDISAMAQVKD----LLDKVLIVDFFFVCAALAWLVAGVGAQTSLQNSALLDAWYPLWQWVFQPAIGVLMLGALTSGAV 100          
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|748154059|ref|WP_039728385.1| (hypothetical protein [Lyngbya confervoides] >gi|746958514|gb|KIF16053.1| hypothetical protein QP59_38255 [Aphanocapsa montana BDHKU210001] >gi|746985282|gb|KIF40974.1| hypothetical protein QQ91_31205 [Lyngbya confervoides BDU141951])

HSP 1 Score: 61.2326 bits (147), Expect = 5.631e-9
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = 0
Query:  145 LADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEM 225
            + D+  + L  +LVA+ F VLA  GWF T VV +S  N     D +  +W P+ QPA+GILMAG + +G L  +A++ + +
Sbjct:    1 MWDRVLNGLNWLLVANLFFVLASFGWFATAVVGRS-FNVNLGFDLWYSLWTPLFQPAIGILMAGAIAIGVLRWIANKLEAL 80          
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|1026757192|gb|OAE19504.1| (hypothetical protein AXG93_4794s1160 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 65.855 bits (159), Expect = 6.241e-9
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 0
Query:  118 LQQDIVRFRKKEREVQALE----GDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTL 210
            LQ+DI R  KKE   + L+     D    A       S+++K+LVADFF +L  L W V  V  +S L+   +ID +  +W  + QPALG+ MAG +
Sbjct:  414 LQKDIERLAKKEEVERILKRPYNEDAPAAAGEGGALLSVVEKILVADFFFILFILAWLVAAVAEQSFLDSTKLIDSWLPLWPSLFQPALGLFMAGAI 510          
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|302850555|ref|XP_002956804.1| (hypothetical protein VOLCADRAFT_77268 [Volvox carteri f. nagariensis] >gi|300257864|gb|EFJ42107.1| hypothetical protein VOLCADRAFT_77268 [Volvox carteri f. nagariensis])

HSP 1 Score: 61.6178 bits (148), Expect = 2.808e-8
Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = 0
Query:  113 DLQERLQQDIVRFRKKEREVQALEGDVTGFASLADKAGSI-----------LQKVLVADFFVVLAFLGWFVTGVVFKSALNDAT---VIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQE 224
            D+ E L+ D+ R R K     A  G  +G A    KA              L K+L+ADFF+VL  L W   GV+ ++ALN  +   ++D +  +W  + QPALG+LMAG L  G L  +  + Q+
Sbjct:   44 DISEALKADLERLRAKSASGAA--GGPSGTAQQPPKAEEAAGPLPGQFKDALDKLLIADFFLVLFILAWLAGGVL-QNALNGGSGSPLLDAWYPLWPLLWQPALGVLMAGALVSGGLGWLREQQQQ 166          
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|159486282|ref|XP_001701170.1| (hypothetical protein CHLREDRAFT_107441 [Chlamydomonas reinhardtii] >gi|158271870|gb|EDO97680.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 55.4546 bits (132), Expect = 6.169e-7
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 0
Query:  156 VLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTL---GVGALNSVASRTQE 224
            +L+ADFF+VL  L W   GV   +    + ++D +  +W  + QPALG+LMAG L   G+G LN  A++ ++
Sbjct:    1 LLIADFFLVLFILAWLAAGVAQNAVAGSSPLLDAWYPLWPLLWQPALGVLMAGALVSGGIGWLNEQAAKREQ 72          
The following BLAST results are available for this feature:
BLAST of EWM28583.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
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01SequenceEWM28583.1XP_001783383.1CBJ25457.1OSX77093.1GAQ88867.1XP_005644241.1WP_039728385.1OAE19504.1XP_002956804.1XP_001701170.1
Match NameE-valueIdentityDescription
gi|585111001|gb|EWM28583.1|1.674e-163100.00hypothetical protein Naga_100009g82 [Nannochlorops... [more]
gi|168062836|ref|XP_001783383.1|1.145e-1242.00predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|298710393|emb|CBJ25457.1|2.787e-1235.71expressed unknown protein [Ectocarpus siliculosus][more]
gi|1189390128|gb|OSX77093.1|1.948e-1133.90hypothetical protein BU14_0161s0015 [Porphyra umbi... [more]
gi|971509349|dbj|GAQ88867.1|4.081e-1031.54hypothetical protein KFL_004650120 [Klebsormidium ... [more]
gi|545357151|ref|XP_005644241.1|5.462e-1040.00hypothetical protein COCSUDRAFT_54585 [Coccomyxa s... [more]
gi|748154059|ref|WP_039728385.1|5.631e-939.51hypothetical protein [Lyngbya confervoides] >gi|74... [more]
gi|1026757192|gb|OAE19504.1|6.241e-938.14hypothetical protein AXG93_4794s1160 [Marchantia p... [more]
gi|302850555|ref|XP_002956804.1|2.808e-834.92hypothetical protein VOLCADRAFT_77268 [Volvox cart... [more]
gi|159486282|ref|XP_001701170.1|6.169e-738.89hypothetical protein CHLREDRAFT_107441 [Chlamydomo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2079rna2079Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications