EWM28583.1, cds2071 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|585111001|gb|EWM28583.1| (hypothetical protein Naga_100009g82 [Nannochloropsis gaditana]) HSP 1 Score: 459.529 bits (1181), Expect = 1.674e-163 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0 Query: 1 MRPRVVAFALGLLGWVEGFRLPRAPTSPASSSVGFAGFTAVGRSSFQSKNSASDDNSGGPANSTFKKRKRKVPLPAELLQDNVNSGGSKDPPTSSVNIQDATSSSPISPGEVDLQERLQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEMNEKKKG 231 MRPRVVAFALGLLGWVEGFRLPRAPTSPASSSVGFAGFTAVGRSSFQSKNSASDDNSGGPANSTFKKRKRKVPLPAELLQDNVNSGGSKDPPTSSVNIQDATSSSPISPGEVDLQERLQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEMNEKKKG Sbjct: 1 MRPRVVAFALGLLGWVEGFRLPRAPTSPASSSVGFAGFTAVGRSSFQSKNSASDDNSGGPANSTFKKRKRKVPLPAELLQDNVNSGGSKDPPTSSVNIQDATSSSPISPGEVDLQERLQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEMNEKKKG 231
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|168062836|ref|XP_001783383.1| (predicted protein [Physcomitrella patens] >gi|162665133|gb|EDQ51828.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 74.7146 bits (182), Expect = 1.145e-12 Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 0 Query: 118 LQQDIVRFRKKEREVQALEG-DVTGFASLADK------AGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTL 210 L++DI RF+KK + +E + TG AS + K S+++KVLVADFF +L L W V G+ KS L +T+ID + +W + QPALG+ MAG + Sbjct: 109 LEEDIARFQKKRDLEKRIENFNRTGNASESGKPEGDGMVKSLVEKVLVADFFFILFILAWLVAGLGEKSLLQSSTLIDSWLPLWPTLFQPALGVFMAGAI 208
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|298710393|emb|CBJ25457.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.485 bits (184), Expect = 2.787e-12 Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 0 Query: 118 LQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEMNEKK 229 L DI RFR+ E G+ S+A A I+ ++ DFFVV+AF+ WF+ GVV ++ ++D+F D W PV+QPALG+LM GT+ G ++ + + ++ + Sbjct: 268 LGADIERFRRAENRQPETAGE-----SIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGGSGNDEDDNR 374
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|1189390128|gb|OSX77093.1| (hypothetical protein BU14_0161s0015 [Porphyra umbilicalis]) HSP 1 Score: 71.2478 bits (173), Expect = 1.948e-11 Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 0 Query: 109 PGEVDLQERLQQDIVRFRKKEREVQALEGDVTGFA---SLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQ 223 PGE ++ L +D+ FR ++R + + S + G + +LVADFFVV FL W V +V A ++ ++D + +W VIQP LG+LM GT+ G L+ V S+ + Sbjct: 107 PGE-SVESTLARDLAGFRTRQRRREGKDAAAAVEPEAESTLARVGKTVNTLLVADFFVVCFFLAWLVVALVPHFAYHNEVLLDAWLSLWTLVIQPLLGVLMLGTIVAGTLSYVQSKEE 223
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|971509349|dbj|GAQ88867.1| (hypothetical protein KFL_004650120 [Klebsormidium nitens]) HSP 1 Score: 66.6254 bits (161), Expect = 4.081e-10 Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 0 Query: 118 LQQDIVRFRKKEREVQALEGDVTG----------------------FASLADKA-GSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQE 224 LQQD+ R R E + +AL+ G F+ A +A S++ +LVADFF ++ L W + GVV + AL+ ++D + +W V QPA+G+LMAGT+ G +++++ E Sbjct: 50 LQQDLERIRGLEDKDRALKAGRDGPGDRLSSDEFQEAKSFFAATKEFSDNATRATKSVIDTILVADFFFIILVLLWLIAGVVERQALDSTKLLDVWLPLWGTVFQPAIGVLMAGTIVSGTISTLSQNPDE 179
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|545357151|ref|XP_005644241.1| (hypothetical protein COCSUDRAFT_54585 [Coccomyxa subellipsoidea C-169] >gi|384246206|gb|EIE19697.1| hypothetical protein COCSUDRAFT_54585 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 64.6994 bits (156), Expect = 5.462e-10 Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 0 Query: 136 EGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGAL 215 E D++ A + D +L KVL+ DFF V A L W V GV +++L ++ ++D + +W V QPA+G+LM G L GA+ Sbjct: 25 EKDISAMAQVKD----LLDKVLIVDFFFVCAALAWLVAGVGAQTSLQNSALLDAWYPLWQWVFQPAIGVLMLGALTSGAV 100
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|748154059|ref|WP_039728385.1| (hypothetical protein [Lyngbya confervoides] >gi|746958514|gb|KIF16053.1| hypothetical protein QP59_38255 [Aphanocapsa montana BDHKU210001] >gi|746985282|gb|KIF40974.1| hypothetical protein QQ91_31205 [Lyngbya confervoides BDU141951]) HSP 1 Score: 61.2326 bits (147), Expect = 5.631e-9 Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = 0 Query: 145 LADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEM 225 + D+ + L +LVA+ F VLA GWF T VV +S N D + +W P+ QPA+GILMAG + +G L +A++ + + Sbjct: 1 MWDRVLNGLNWLLVANLFFVLASFGWFATAVVGRS-FNVNLGFDLWYSLWTPLFQPAIGILMAGAIAIGVLRWIANKLEAL 80
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|1026757192|gb|OAE19504.1| (hypothetical protein AXG93_4794s1160 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 65.855 bits (159), Expect = 6.241e-9 Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 0 Query: 118 LQQDIVRFRKKEREVQALE----GDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTL 210 LQ+DI R KKE + L+ D A S+++K+LVADFF +L L W V V +S L+ +ID + +W + QPALG+ MAG + Sbjct: 414 LQKDIERLAKKEEVERILKRPYNEDAPAAAGEGGALLSVVEKILVADFFFILFILAWLVAAVAEQSFLDSTKLIDSWLPLWPSLFQPALGLFMAGAI 510
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|302850555|ref|XP_002956804.1| (hypothetical protein VOLCADRAFT_77268 [Volvox carteri f. nagariensis] >gi|300257864|gb|EFJ42107.1| hypothetical protein VOLCADRAFT_77268 [Volvox carteri f. nagariensis]) HSP 1 Score: 61.6178 bits (148), Expect = 2.808e-8 Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = 0 Query: 113 DLQERLQQDIVRFRKKEREVQALEGDVTGFASLADKAGSI-----------LQKVLVADFFVVLAFLGWFVTGVVFKSALNDAT---VIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQE 224 D+ E L+ D+ R R K A G +G A KA L K+L+ADFF+VL L W GV+ ++ALN + ++D + +W + QPALG+LMAG L G L + + Q+ Sbjct: 44 DISEALKADLERLRAKSASGAA--GGPSGTAQQPPKAEEAAGPLPGQFKDALDKLLIADFFLVLFILAWLAGGVL-QNALNGGSGSPLLDAWYPLWPLLWQPALGVLMAGALVSGGLGWLREQQQQ 166
BLAST of EWM28583.1 vs. NCBI_GenBank
Match: gi|159486282|ref|XP_001701170.1| (hypothetical protein CHLREDRAFT_107441 [Chlamydomonas reinhardtii] >gi|158271870|gb|EDO97680.1| predicted protein, partial [Chlamydomonas reinhardtii]) HSP 1 Score: 55.4546 bits (132), Expect = 6.169e-7 Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 0 Query: 156 VLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTL---GVGALNSVASRTQE 224 +L+ADFF+VL L W GV + + ++D + +W + QPALG+LMAG L G+G LN A++ ++ Sbjct: 1 LLIADFFLVLFILAWLAAGVAQNAVAGSSPLLDAWYPLWPLLWQPALGVLMAGALVSGGIGWLNEQAAKREQ 72 The following BLAST results are available for this feature:
BLAST of EWM28583.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10 Position : 0 Zoom : x 1
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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