EWM28559.1, cds2057 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|585110977|gb|EWM28559.1| (hnh endonuclease [Nannochloropsis gaditana]) HSP 1 Score: 937.176 bits (2421), Expect = 0.000e+0 Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0
Query: 1 MDRLCVLADLASASLGNRLRPDVHAKPPLRPLTPDGVRHGFHITQGARKKGLGSVREPRAPFADALGTFLQGREGGRKLRENGLVLVTTTMARPENRAGLLRTVALGAFVSTLSCTKAFIIPPGTSPWLSVVHAPAFDSEERRPAGGAPALSVRLAAAKKKTTGGGASPPSSKTSPALSVSTSKKKSRKDEGQAQRHAKHMKKPTDSATRADFGLGGPDFEMELLPPTDKNAGPKTATSRKGVSGSVGTVGGDEDHTTDHHLRLLRQTGKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETEL 457
MDRLCVLADLASASLGNRLRPDVHAKPPLRPLTPDGVRHGFHITQGARKKGLGSVREPRAPFADALGTFLQGREGGRKLRENGLVLVTTTMARPENRAGLLRTVALGAFVSTLSCTKAFIIPPGTSPWLSVVHAPAFDSEERRPAGGAPALSVRLAAAKKKTTGGGASPPSSKTSPALSVSTSKKKSRKDEGQAQRHAKHMKKPTDSATRADFGLGGPDFEMELLPPTDKNAGPKTATSRKGVSGSVGTVGGDEDHTTDHHLRLLRQTGKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETEL
Sbjct: 1 MDRLCVLADLASASLGNRLRPDVHAKPPLRPLTPDGVRHGFHITQGARKKGLGSVREPRAPFADALGTFLQGREGGRKLRENGLVLVTTTMARPENRAGLLRTVALGAFVSTLSCTKAFIIPPGTSPWLSVVHAPAFDSEERRPAGGAPALSVRLAAAKKKTTGGGASPPSSKTSPALSVSTSKKKSRKDEGQAQRHAKHMKKPTDSATRADFGLGGPDFEMELLPPTDKNAGPKTATSRKGVSGSVGTVGGDEDHTTDHHLRLLRQTGKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETEL 457
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|496231987|ref|WP_008946022.1| (HNH endonuclease [Oceanibaculum indicum] >gi|407198866|gb|EKE68893.1| putative HNH endonuclease [Oceanibaculum indicum P24]) HSP 1 Score: 174.866 bits (442), Expect = 6.410e-49 Identity = 88/191 (46.07%), Postives = 118/191 (61.78%), Query Frame = 0
Query: 269 GKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFP---HESWETYLGGPPETE 456
+P LVLN D +PLSY PLS+ WQ+ +KA+FL+RV +LA+YD ++S +LPSV+ LKQY R P R N+++RDR+SC YC + S +LT DHV+PRS+GG+ SW+N+VT C CN KG R ++IGM+ L PPR+P ELQ+ R G P H SW+ YL E E
Sbjct: 6 NDWPALVLNADCRPLSYYPLSLWNWQDTVKAVFLDRVNILAHYDQLVRSPTFEMRLPSVISLKQYVPAARR--PAFTRFNVFLRDRFSCQYCGELFSTQELTFDHVIPRSRGGRTSWENVVTACGPCNLFKGNRMP---RDIGMLPLEPPRQPTSFELQQNGR------GFPPNHLHRSWQDYLYWDTELE 185
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1082353572|gb|OFX13347.1| (MFS transporter [Alphaproteobacteria bacterium RIFOXYD12_FULL_60_8]) HSP 1 Score: 172.94 bits (437), Expect = 3.582e-48 Identity = 85/183 (46.45%), Postives = 116/183 (63.39%), Query Frame = 0
Query: 274 LVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETE 456
LVLN D +PLSY PLS+ WQ+AIKA+FL+RV+V+A YD + S + +LPSV+ LK Y R P R N+++RD ++C YC QRL AHDLT DHV+PRS+GG+ +W+N+V C CN KG R+ L+ GM L++PP +P +LQ R + + HESW +L E E
Sbjct: 10 LVLNADFRPLSYFPLSLWSWQDAIKAVFLDRVSVVAEYDRVVHSPSWQMRLPSVIALKDYITP--SRTPAFTRFNVFLRDGFTCQYCGQRLPAHDLTFDHVLPRSRGGRTTWENVVAACAPCNLTKGHRS---LQASGMTLIHPPFRPSSQKLQHSGRAFPPN---YLHESWRDFLYWDTELE 184
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1197213330|ref|WP_086463963.1| (HNH endonuclease [Oceanibaculum sp. L54-1-50]) HSP 1 Score: 172.94 bits (437), Expect = 3.731e-48 Identity = 87/191 (45.55%), Postives = 116/191 (60.73%), Query Frame = 0
Query: 269 GKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFP---HESWETYLGGPPETE 456
+P LVLN D +PLSY PLS+ WQ+ +KA+FL+RV +LA+YD ++S +LPSV+ LKQY R P R N+++RD ++C YC S +LT DHV+PRS+GG+ SWDN+VT C CN KG R ++IGM+ L PPR+P ELQ+ R G P H SW+ YL E E
Sbjct: 6 NDWPALVLNADCRPLSYYPLSLWNWQDTVKAVFLDRVNILAHYDQLVRSPTFEMRLPSVISLKQYVPAARR--PAFTRFNVFLRDSFTCQYCGDLFSTQELTFDHVIPRSRGGRTSWDNVVTACGPCNLFKGNRMP---RDIGMLPLEPPRQPTSFELQQNGR------GFPPNHLHRSWQDYLYWDTELE 185
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1012312618|gb|AMS30859.1| (MFS transporter [Hyphomonadaceae bacterium UKL13-1]) HSP 1 Score: 171.4 bits (433), Expect = 1.226e-47 Identity = 87/183 (47.54%), Postives = 119/183 (65.03%), Query Frame = 0
Query: 271 YPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFP----HESWETYL 449
+P LVLN D +PLSY PLS+ WQ+A+KA++++RV V+A YD +QS + +LPSV+ LK+Y + ++R P R N+++RD + CAYC + DLT DHV+PRSKGGK +W+N+VT C CN RKG R+ L+E+GM PPR+P M ELQ R FP HESW +L
Sbjct: 10 FPALVLNADYRPLSYYPLSVWSWQDAVKAVYMDRVEVVAEYDQAVQSPSFEMRLPSVISLKEYVQ--QDRAPAFTRFNLFLRDGFKCAYCH---ATDDLTFDHVVPRSKGGKTTWENIVTACSPCNLRKGGRS---LREVGMTPRKPPRRPTMHELQAMGR-------KFPPHHLHESWVDWL 177
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1186172759|ref|WP_085373742.1| (HNH endonuclease [Magnetospirillum sp. ME-1] >gi|1184807221|gb|ARJ66249.1| MFS transporter [Magnetospirillum sp. ME-1]) HSP 1 Score: 171.4 bits (433), Expect = 1.406e-47 Identity = 85/186 (45.70%), Postives = 115/186 (61.83%), Query Frame = 0
Query: 271 YPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETE 456
+P LVLN D +PLSY PLS+ WQ+AIKA+ +RV V++ YD I S + +LPSV+ LK++ R+ P R N+++RDR+SC YC + HDLT DHV+PRSKGG+ +WDN+VT C CN KG R L E+GM LL+ P +P +LQ R + + HESW +L E E
Sbjct: 7 HPALVLNADFRPLSYFPLSLWSWQDAIKAVVSDRVAVVSEYDRVIHSPSQSLRLPSVIALKEFIPASRK--PAFTRFNVFLRDRFSCQYCGEWFPTHDLTFDHVLPRSKGGRTTWDNVVTACAPCNLMKGDRL---LFEVGMALLSRPGQPSTWQLQENGRAFPPN---YLHESWRDFLYWDSELE 184
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|517845846|ref|WP_019016054.1| (HNH endonuclease [Elioraea tepidiphila]) HSP 1 Score: 171.014 bits (432), Expect = 1.994e-47 Identity = 84/186 (45.16%), Postives = 117/186 (62.90%), Query Frame = 0
Query: 271 YPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETE 456
YP LVLN D +PLSY PLS+ WQ+A+KA+F++RV VL+ Y++ ++S + +LPSV+ LK+Y R P R N+++RD ++C YC + HDLT DHV+PRSKGG+ +W+N+VT C CN RKG R +E + M NPPR+P ELQ R + + HESW +L E E
Sbjct: 8 YPALVLNADFRPLSYFPLSLWAWQDAVKAVFMDRVAVLSEYETEVRSPSVSMKLPSVIALKEYVPSARR--PAFTRFNVFLRDCFACQYCGESFPTHDLTFDHVVPRSKGGRTTWENVVTACSCCNLRKGNRLPRECR---MWPRNPPRQPTSWELQENGRAFPPN---YLHESWRDFLYWDSELE 185
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1188436424|ref|WP_085556102.1| (HNH endonuclease [Azospirillum lipoferum] >gi|1184426956|emb|SMH58288.1| 5-methylcytosine-specific restriction endonuclease McrA [Azospirillum lipoferum]) HSP 1 Score: 170.629 bits (431), Expect = 2.949e-47 Identity = 83/186 (44.62%), Postives = 117/186 (62.90%), Query Frame = 0
Query: 272 PVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETEL 457
P LVLN D +PLSY PLS+ WQEA+KA+FLERV ++++YD ++S + QLPSV+ LK++ R P R N+++RDR++C YC + H+LT DHV+PRS+GG+ +W+N++T C CN KG R GM+ L+PP +P ELQ R + F HESW +L +TEL
Sbjct: 9 PALVLNADFRPLSYFPLSLWSWQEAVKAVFLERVNIVSHYDRIVRSPSFEVQLPSVISLKEFIPATRR--PAFTRFNVFLRDRFTCQYCGRPFPTHELTFDHVIPRSRGGRTTWENVITSCSACNLEKGNRMP---HVCGMIPLSPPFQPSAYELQENGRAF---PPNFLHESWRDFLYW--DTEL 184
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1057018031|ref|WP_068429361.1| (HNH endonuclease [Magnetospirillum sp. XM-1] >gi|972714296|emb|CUW37676.1| putative HNH endonuclease family protein [Magnetospirillum sp. XM-1]) HSP 1 Score: 170.244 bits (430), Expect = 3.213e-47 Identity = 85/186 (45.70%), Postives = 116/186 (62.37%), Query Frame = 0
Query: 271 YPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETE 456
+P LVLN D +PLSY PLS+ WQ+AIKA+ +RV V++ YD I S + +LPSV+ LK++ R+ P R N+++RDR+SC YC + HDLT DHV+PRSKGG+ +WDN+VT C CN KG R L E+GM LL+ P +P + +LQ R + + HESW +L E E
Sbjct: 7 HPALVLNADFRPLSYFPLSLWSWQDAIKAVVSDRVAVVSEYDRVIHSPSQSLRLPSVIALKEFIPTARK--PAFTRFNVFLRDRFSCQYCGEWFPTHDLTFDHVLPRSKGGRTTWDNVVTACAPCNLMKGDRL---LFEVGMGLLSRPGQPSIWQLQENGRAFPPN---YLHESWRDFLYWDSELE 184
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|652609221|ref|WP_026988692.1| (HNH endonuclease [Fodinicurvata fenggangensis]) HSP 1 Score: 170.244 bits (430), Expect = 4.060e-47 Identity = 86/186 (46.24%), Postives = 114/186 (61.29%), Query Frame = 0
Query: 271 YPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETE 456
YP LVLN D +PLSY PLSI WQ++IKA+FL+RV VL+ Y+ + S + +LPSV+ LK+Y +R P R N+++RDR+ C YC RL A DLT DHV PRS+GG+ +W N+VT C+ CN KG R ++ GM+ LN P P LQ+ R + F HESW +L E E
Sbjct: 7 YPSLVLNADFRPLSYFPLSIWSWQDSIKAVFLDRVNVLSEYEHQVSSPSCSMRLPSVIALKEYVH--LDRRPAFTRFNVFLRDRFECQYCGDRLPAEDLTFDHVTPRSRGGRTTWHNVVTACQSCNLIKGNRMP---RDCGMLPLNEPEPPTTRTLQQHGRAF---PPNFLHESWNDFLYWDSELE 184 The following BLAST results are available for this feature:
BLAST of EWM28559.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|