EWM28559.1, cds2057 (CDS) Nannochloropsis gaditana

Overview
NameEWM28559.1
Unique Namecds2057
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:808248..808820 -
Alignment locationCM002458.1:807852..808163 -
Alignment locationCM002458.1:807421..807706 -
Alignment locationCM002458.1:807119..807321 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28559.1
Producthnh endonuclease
Orig transcript idgnl|cribi|Naga_100009g98.602.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:808248..808820 -
CM002458.1supercontigCM002458.1:807852..808163 -
CM002458.1supercontigCM002458.1:807421..807706 -
CM002458.1supercontigCM002458.1:807119..807321 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0004519endonuclease activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR002711HNH
IPR003615HNH_nuc
Homology
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|585110977|gb|EWM28559.1| (hnh endonuclease [Nannochloropsis gaditana])

HSP 1 Score: 937.176 bits (2421), Expect = 0.000e+0
Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0
Query:    1 MDRLCVLADLASASLGNRLRPDVHAKPPLRPLTPDGVRHGFHITQGARKKGLGSVREPRAPFADALGTFLQGREGGRKLRENGLVLVTTTMARPENRAGLLRTVALGAFVSTLSCTKAFIIPPGTSPWLSVVHAPAFDSEERRPAGGAPALSVRLAAAKKKTTGGGASPPSSKTSPALSVSTSKKKSRKDEGQAQRHAKHMKKPTDSATRADFGLGGPDFEMELLPPTDKNAGPKTATSRKGVSGSVGTVGGDEDHTTDHHLRLLRQTGKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETEL 457
            MDRLCVLADLASASLGNRLRPDVHAKPPLRPLTPDGVRHGFHITQGARKKGLGSVREPRAPFADALGTFLQGREGGRKLRENGLVLVTTTMARPENRAGLLRTVALGAFVSTLSCTKAFIIPPGTSPWLSVVHAPAFDSEERRPAGGAPALSVRLAAAKKKTTGGGASPPSSKTSPALSVSTSKKKSRKDEGQAQRHAKHMKKPTDSATRADFGLGGPDFEMELLPPTDKNAGPKTATSRKGVSGSVGTVGGDEDHTTDHHLRLLRQTGKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETEL
Sbjct:    1 MDRLCVLADLASASLGNRLRPDVHAKPPLRPLTPDGVRHGFHITQGARKKGLGSVREPRAPFADALGTFLQGREGGRKLRENGLVLVTTTMARPENRAGLLRTVALGAFVSTLSCTKAFIIPPGTSPWLSVVHAPAFDSEERRPAGGAPALSVRLAAAKKKTTGGGASPPSSKTSPALSVSTSKKKSRKDEGQAQRHAKHMKKPTDSATRADFGLGGPDFEMELLPPTDKNAGPKTATSRKGVSGSVGTVGGDEDHTTDHHLRLLRQTGKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETEL 457          
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|496231987|ref|WP_008946022.1| (HNH endonuclease [Oceanibaculum indicum] >gi|407198866|gb|EKE68893.1| putative HNH endonuclease [Oceanibaculum indicum P24])

HSP 1 Score: 174.866 bits (442), Expect = 6.410e-49
Identity = 88/191 (46.07%), Postives = 118/191 (61.78%), Query Frame = 0
Query:  269 GKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFP---HESWETYLGGPPETE 456
              +P LVLN D +PLSY PLS+  WQ+ +KA+FL+RV +LA+YD  ++S     +LPSV+ LKQY    R   P   R N+++RDR+SC YC +  S  +LT DHV+PRS+GG+ SW+N+VT C  CN  KG R     ++IGM+ L PPR+P   ELQ+  R      G  P   H SW+ YL    E E
Sbjct:    6 NDWPALVLNADCRPLSYYPLSLWNWQDTVKAVFLDRVNILAHYDQLVRSPTFEMRLPSVISLKQYVPAARR--PAFTRFNVFLRDRFSCQYCGELFSTQELTFDHVIPRSRGGRTSWENVVTACGPCNLFKGNRMP---RDIGMLPLEPPRQPTSFELQQNGR------GFPPNHLHRSWQDYLYWDTELE 185          
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1082353572|gb|OFX13347.1| (MFS transporter [Alphaproteobacteria bacterium RIFOXYD12_FULL_60_8])

HSP 1 Score: 172.94 bits (437), Expect = 3.582e-48
Identity = 85/183 (46.45%), Postives = 116/183 (63.39%), Query Frame = 0
Query:  274 LVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETE 456
            LVLN D +PLSY PLS+  WQ+AIKA+FL+RV+V+A YD  + S +   +LPSV+ LK Y      R P   R N+++RD ++C YC QRL AHDLT DHV+PRS+GG+ +W+N+V  C  CN  KG R+   L+  GM L++PP +P   +LQ   R +      + HESW  +L    E E
Sbjct:   10 LVLNADFRPLSYFPLSLWSWQDAIKAVFLDRVSVVAEYDRVVHSPSWQMRLPSVIALKDYITP--SRTPAFTRFNVFLRDGFTCQYCGQRLPAHDLTFDHVLPRSRGGRTTWENVVAACAPCNLTKGHRS---LQASGMTLIHPPFRPSSQKLQHSGRAFPPN---YLHESWRDFLYWDTELE 184          
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1197213330|ref|WP_086463963.1| (HNH endonuclease [Oceanibaculum sp. L54-1-50])

HSP 1 Score: 172.94 bits (437), Expect = 3.731e-48
Identity = 87/191 (45.55%), Postives = 116/191 (60.73%), Query Frame = 0
Query:  269 GKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFP---HESWETYLGGPPETE 456
              +P LVLN D +PLSY PLS+  WQ+ +KA+FL+RV +LA+YD  ++S     +LPSV+ LKQY    R   P   R N+++RD ++C YC    S  +LT DHV+PRS+GG+ SWDN+VT C  CN  KG R     ++IGM+ L PPR+P   ELQ+  R      G  P   H SW+ YL    E E
Sbjct:    6 NDWPALVLNADCRPLSYYPLSLWNWQDTVKAVFLDRVNILAHYDQLVRSPTFEMRLPSVISLKQYVPAARR--PAFTRFNVFLRDSFTCQYCGDLFSTQELTFDHVIPRSRGGRTSWDNVVTACGPCNLFKGNRMP---RDIGMLPLEPPRQPTSFELQQNGR------GFPPNHLHRSWQDYLYWDTELE 185          
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1012312618|gb|AMS30859.1| (MFS transporter [Hyphomonadaceae bacterium UKL13-1])

HSP 1 Score: 171.4 bits (433), Expect = 1.226e-47
Identity = 87/183 (47.54%), Postives = 119/183 (65.03%), Query Frame = 0
Query:  271 YPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFP----HESWETYL 449
            +P LVLN D +PLSY PLS+  WQ+A+KA++++RV V+A YD  +QS +   +LPSV+ LK+Y +  ++R P   R N+++RD + CAYC    +  DLT DHV+PRSKGGK +W+N+VT C  CN RKG R+   L+E+GM    PPR+P M ELQ   R        FP    HESW  +L
Sbjct:   10 FPALVLNADYRPLSYYPLSVWSWQDAVKAVYMDRVEVVAEYDQAVQSPSFEMRLPSVISLKEYVQ--QDRAPAFTRFNLFLRDGFKCAYCH---ATDDLTFDHVVPRSKGGKTTWENIVTACSPCNLRKGGRS---LREVGMTPRKPPRRPTMHELQAMGR-------KFPPHHLHESWVDWL 177          
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1186172759|ref|WP_085373742.1| (HNH endonuclease [Magnetospirillum sp. ME-1] >gi|1184807221|gb|ARJ66249.1| MFS transporter [Magnetospirillum sp. ME-1])

HSP 1 Score: 171.4 bits (433), Expect = 1.406e-47
Identity = 85/186 (45.70%), Postives = 115/186 (61.83%), Query Frame = 0
Query:  271 YPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETE 456
            +P LVLN D +PLSY PLS+  WQ+AIKA+  +RV V++ YD  I S +   +LPSV+ LK++    R+  P   R N+++RDR+SC YC +    HDLT DHV+PRSKGG+ +WDN+VT C  CN  KG R    L E+GM LL+ P +P   +LQ   R +      + HESW  +L    E E
Sbjct:    7 HPALVLNADFRPLSYFPLSLWSWQDAIKAVVSDRVAVVSEYDRVIHSPSQSLRLPSVIALKEFIPASRK--PAFTRFNVFLRDRFSCQYCGEWFPTHDLTFDHVLPRSKGGRTTWDNVVTACAPCNLMKGDRL---LFEVGMALLSRPGQPSTWQLQENGRAFPPN---YLHESWRDFLYWDSELE 184          
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|517845846|ref|WP_019016054.1| (HNH endonuclease [Elioraea tepidiphila])

HSP 1 Score: 171.014 bits (432), Expect = 1.994e-47
Identity = 84/186 (45.16%), Postives = 117/186 (62.90%), Query Frame = 0
Query:  271 YPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETE 456
            YP LVLN D +PLSY PLS+  WQ+A+KA+F++RV VL+ Y++ ++S +   +LPSV+ LK+Y    R   P   R N+++RD ++C YC +    HDLT DHV+PRSKGG+ +W+N+VT C  CN RKG R  +E +   M   NPPR+P   ELQ   R +      + HESW  +L    E E
Sbjct:    8 YPALVLNADFRPLSYFPLSLWAWQDAVKAVFMDRVAVLSEYETEVRSPSVSMKLPSVIALKEYVPSARR--PAFTRFNVFLRDCFACQYCGESFPTHDLTFDHVVPRSKGGRTTWENVVTACSCCNLRKGNRLPRECR---MWPRNPPRQPTSWELQENGRAFPPN---YLHESWRDFLYWDSELE 185          
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1188436424|ref|WP_085556102.1| (HNH endonuclease [Azospirillum lipoferum] >gi|1184426956|emb|SMH58288.1| 5-methylcytosine-specific restriction endonuclease McrA [Azospirillum lipoferum])

HSP 1 Score: 170.629 bits (431), Expect = 2.949e-47
Identity = 83/186 (44.62%), Postives = 117/186 (62.90%), Query Frame = 0
Query:  272 PVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETEL 457
            P LVLN D +PLSY PLS+  WQEA+KA+FLERV ++++YD  ++S +   QLPSV+ LK++    R   P   R N+++RDR++C YC +    H+LT DHV+PRS+GG+ +W+N++T C  CN  KG R        GM+ L+PP +P   ELQ   R +      F HESW  +L    +TEL
Sbjct:    9 PALVLNADFRPLSYFPLSLWSWQEAVKAVFLERVNIVSHYDRIVRSPSFEVQLPSVISLKEFIPATRR--PAFTRFNVFLRDRFTCQYCGRPFPTHELTFDHVIPRSRGGRTTWENVITSCSACNLEKGNRMP---HVCGMIPLSPPFQPSAYELQENGRAF---PPNFLHESWRDFLYW--DTEL 184          
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|1057018031|ref|WP_068429361.1| (HNH endonuclease [Magnetospirillum sp. XM-1] >gi|972714296|emb|CUW37676.1| putative HNH endonuclease family protein [Magnetospirillum sp. XM-1])

HSP 1 Score: 170.244 bits (430), Expect = 3.213e-47
Identity = 85/186 (45.70%), Postives = 116/186 (62.37%), Query Frame = 0
Query:  271 YPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETE 456
            +P LVLN D +PLSY PLS+  WQ+AIKA+  +RV V++ YD  I S +   +LPSV+ LK++    R+  P   R N+++RDR+SC YC +    HDLT DHV+PRSKGG+ +WDN+VT C  CN  KG R    L E+GM LL+ P +P + +LQ   R +      + HESW  +L    E E
Sbjct:    7 HPALVLNADFRPLSYFPLSLWSWQDAIKAVVSDRVAVVSEYDRVIHSPSQSLRLPSVIALKEFIPTARK--PAFTRFNVFLRDRFSCQYCGEWFPTHDLTFDHVLPRSKGGRTTWDNVVTACAPCNLMKGDRL---LFEVGMGLLSRPGQPSIWQLQENGRAFPPN---YLHESWRDFLYWDSELE 184          
BLAST of EWM28559.1 vs. NCBI_GenBank
Match: gi|652609221|ref|WP_026988692.1| (HNH endonuclease [Fodinicurvata fenggangensis])

HSP 1 Score: 170.244 bits (430), Expect = 4.060e-47
Identity = 86/186 (46.24%), Postives = 114/186 (61.29%), Query Frame = 0
Query:  271 YPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQKGCRERPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGPPETE 456
            YP LVLN D +PLSY PLSI  WQ++IKA+FL+RV VL+ Y+  + S +   +LPSV+ LK+Y     +R P   R N+++RDR+ C YC  RL A DLT DHV PRS+GG+ +W N+VT C+ CN  KG R     ++ GM+ LN P  P    LQ+  R +      F HESW  +L    E E
Sbjct:    7 YPSLVLNADFRPLSYFPLSIWSWQDSIKAVFLDRVNVLSEYEHQVSSPSCSMRLPSVIALKEYVH--LDRRPAFTRFNVFLRDRFECQYCGDRLPAEDLTFDHVTPRSRGGRTTWHNVVTACQSCNLIKGNRMP---RDCGMLPLNEPEPPTTRTLQQHGRAF---PPNFLHESWNDFLYWDSELE 184          
The following BLAST results are available for this feature:
BLAST of EWM28559.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110977|gb|EWM28559.1|0.000e+0100.00hnh endonuclease [Nannochloropsis gaditana][more]
gi|496231987|ref|WP_008946022.1|6.410e-4946.07HNH endonuclease [Oceanibaculum indicum] >gi|40719... [more]
gi|1082353572|gb|OFX13347.1|3.582e-4846.45MFS transporter [Alphaproteobacteria bacterium RIF... [more]
gi|1197213330|ref|WP_086463963.1|3.731e-4845.55HNH endonuclease [Oceanibaculum sp. L54-1-50][more]
gi|1012312618|gb|AMS30859.1|1.226e-4747.54MFS transporter [Hyphomonadaceae bacterium UKL13-1... [more]
gi|1186172759|ref|WP_085373742.1|1.406e-4745.70HNH endonuclease [Magnetospirillum sp. ME-1] >gi|1... [more]
gi|517845846|ref|WP_019016054.1|1.994e-4745.16HNH endonuclease [Elioraea tepidiphila][more]
gi|1188436424|ref|WP_085556102.1|2.949e-4744.62HNH endonuclease [Azospirillum lipoferum] >gi|1184... [more]
gi|1057018031|ref|WP_068429361.1|3.213e-4745.70HNH endonuclease [Magnetospirillum sp. XM-1] >gi|9... [more]
gi|652609221|ref|WP_026988692.1|4.060e-4746.24HNH endonuclease [Fodinicurvata fenggangensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2065rna2065Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications