EWM28609.1, cds2053 (CDS) Nannochloropsis gaditana

Overview
NameEWM28609.1
Unique Namecds2053
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:793594..793608 +
Alignment locationCM002458.1:793703..793750 +
Alignment locationCM002458.1:793862..793903 +
Alignment locationCM002458.1:794173..795843 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28609.1
Productpas-domain protein
Orig transcript idgnl|cribi|Naga_100009g104.652.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:793594..793608 +
CM002458.1supercontigCM002458.1:793703..793750 +
CM002458.1supercontigCM002458.1:793862..793903 +
CM002458.1supercontigCM002458.1:794173..795843 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR000014PAS
Homology
BLAST of EWM28609.1 vs. NCBI_GenBank
Match: gi|585111027|gb|EWM28609.1| (pas-domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1177.93 bits (3046), Expect = 0.000e+0
Identity = 591/591 (100.00%), Postives = 591/591 (100.00%), Query Frame = 0
Query:    1 MEADFGRSSLVNSSNMPGNVMSQPSNGGWPTSNHAYASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL 591
            MEADFGRSSLVNSSNMPGNVMSQPSNGGWPTSNHAYASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL
Sbjct:    1 MEADFGRSSLVNSSNMPGNVMSQPSNGGWPTSNHAYASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL 591          
BLAST of EWM28609.1 vs. NCBI_GenBank
Match: gi|585111028|gb|EWM28610.1| (pas-domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1102.81 bits (2851), Expect = 0.000e+0
Identity = 556/556 (100.00%), Postives = 556/556 (100.00%), Query Frame = 0
Query:   36 YASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL 591
            YASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL
Sbjct:   25 YASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQSSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPSPPPLPFNLRFPPLSTTEAASVVDRATAIPRPAPRPTTRQGSQSRALSPL 580          
BLAST of EWM28609.1 vs. NCBI_GenBank
Match: gi|960351392|gb|ALR84571.1| (bHLH transcription factor 2 [Nannochloropsis salina])

HSP 1 Score: 689.878 bits (1779), Expect = 0.000e+0
Identity = 470/510 (92.16%), Postives = 479/510 (93.92%), Query Frame = 0
Query:   36 YASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGS----TARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQ-SSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQK 540
            Y STSIPQGPPTHAHTAPPLQPTSAY RWLYEGGAGTGAAPSLPYPQQ+QPPSQPPPPPQQTG SWIPGAGGGELVNGGRRIGEARGGGEGGEGG GGTARPQTLGYWGA +PSAGYSG G G     +   S  + S    TARPGG KGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQ+GPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAV AG VAPPL+PSQ S+MPSSA+SSSSSLGAMLPIPISQAPDP LPQISLLSPQAPPTREPRAPHIHNQ HHQHYQQHLHHILQQHNPGSPQDAPP QQRQ QAFPAA+QEASS SPQAGRVAENDQK
Sbjct:   25 YGSTSIPQGPPTHAHTAPPLQPTSAYPRWLYEGGAGTGAAPSLPYPQQHQPPSQPPPPPQQTGGSWIPGAGGGELVNGGRRIGEARGGGEGGEGGTGGTARPQTLGYWGAGVPSAGYSGGGLGGGGGAASKGSESDSSDEGSTARPGGGKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQIGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVSAGTVAPPLMPSQSSTMPSSASSSSSSLGAMLPIPISQAPDPLLPQISLLSPQAPPTREPRAPHIHNQLHHQHYQQHLHHILQQHNPGSPQDAPPQQQRQQQAFPAALQEASSSSPQAGRVAENDQK 534          
BLAST of EWM28609.1 vs. NCBI_GenBank
Match: gi|1154259166|gb|AQX45500.1| (bHLH transcription factor [Aurantiochytrium sp.])

HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 437/510 (85.69%), Postives = 448/510 (87.84%), Query Frame = 0
Query:   36 YASTSIPQGPPTHAHTAPPLQPTSAYSRWLYEGGAGTGAAPSLPYPQQNQPPSQPPPPPQQTGESWIPGAGGGELVNGGRRIGEARGGGEGGEGGAGGTARPQTLGYWGASMPSAGYSGSGGGAASKGSESDSSDEGSTARPGGAKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPG-TEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPE-ELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVLAGPVAPPLVPSQ-SSMPSSAASSSSSLGAMLPIPISQAPDPHLPQISLLSPQAPPTREPRAPHIHNQPHHQHYQQHLHHILQQHNPGSPQDAPPPQQRQHQAFPAAVQEASSPSPQAGRVAENDQKPS 542
            Y STSIPQGPPTHAHTAPPLQPTSAY RWL   GAGTGAAPSLPYPQQ+QPPS PPPPPQQTG SWIPGAGGGELVN   RIGEARGGGEGGEGG GGTARPQTLGYWGA +PSAGY      +     +  SSDEGSTARPGG KGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQ+GPEGKAPG TEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPE ELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAV AG VAPPL+PSQ S+MPSSA+SSSSSLGAM      QAPDP LPQISLLSPQAPPTREPRAPHIHNQ HHQHYQQHLHHILQQHNPGS         +         Q+A   +PQAGRVAEND  PS
Sbjct:   22 YGSTSIPQGPPTHAHTAPPLQPTSAYPRWL---GAGTGAAPSLPYPQQHQPPSFPPPPPQQTGGSWIPGAGGGELVN---RIGEARGGGEGGEGGTGGTARPQTLGYWGAGVPSAGY------SGGGLGDGGSSDEGSTARPGGGKGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQIGPEGKAPGKTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEAELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSSFASAPPLPSQPAPHPAVSAGTVAPPLMPSQSSTMPSSASSSSSSLGAM-----RQAPDPLLPQISLLSPQAPPTREPRAPHIHNQLHHQHYQQHLHHILQQHNPGS--------PQDAPPQQQRQQQAFPAAPQAGRVAENDHPPS 506          
The following BLAST results are available for this feature:
BLAST of EWM28609.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585111027|gb|EWM28609.1|0.000e+0100.00pas-domain protein [Nannochloropsis gaditana][more]
gi|585111028|gb|EWM28610.1|0.000e+0100.00pas-domain protein [Nannochloropsis gaditana][more]
gi|960351392|gb|ALR84571.1|0.000e+092.16bHLH transcription factor 2 [Nannochloropsis salin... [more]
gi|1154259166|gb|AQX45500.1|0.000e+085.69bHLH transcription factor [Aurantiochytrium sp.][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2061rna2061Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications