EWM28629.1, cds2034 (CDS) Nannochloropsis gaditana

Overview
NameEWM28629.1
Unique Namecds2034
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:759284..759931 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28629.1
Productfkbp-type peptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100182g5.939.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:759284..759931 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Homology
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|585111048|gb|EWM28629.1| (fkbp-type peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 434.106 bits (1115), Expect = 5.975e-154
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MGASRLLHLCSNLLLLVITTAYVVPSMTTTPTSWARYAKEKGVAVRREAVGFTGMLGAVALATGGSTATTLAWPLQVLAEESPVKVRKVNPNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI 215
            MGASRLLHLCSNLLLLVITTAYVVPSMTTTPTSWARYAKEKGVAVRREAVGFTGMLGAVALATGGSTATTLAWPLQVLAEESPVKVRKVNPNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI
Sbjct:    1 MGASRLLHLCSNLLLLVITTAYVVPSMTTTPTSWARYAKEKGVAVRREAVGFTGMLGAVALATGGSTATTLAWPLQVLAEESPVKVRKVNPNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI 215          
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|544218591|ref|XP_005539439.1| (similar to FKBP-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D] >gi|449020001|dbj|BAM83403.1| similar to FKBP-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 142.895 bits (359), Expect = 6.935e-39
Identity = 65/129 (50.39%), Postives = 92/129 (71.32%), Query Frame = 0
Query:   87 RKVNPNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI 215
            +K++ +K    P+GV Y D K G G SP+ GD V+I YIG LSDGTIFD     G+KPLAF  G KQ++PG+E+ + +M+ GG+R+++VP++L FGE+GVC E   CLVPPN  + Y+V L RV+++P 
Sbjct:   96 QKLDLSKFVRDPSGVLYRDYKEGTGASPKDGDLVVINYIGYLSDGTIFDNTTAKGRKPLAFIFGKKQMVPGVEKGIETMKTGGKRRIIVPSELGFGERGVCIEGQGCLVPPNETLTYDVELMRVSIAPF 224          
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|298708415|emb|CBJ48478.1| (FK506-binding protein 1 [Ectocarpus siliculosus])

HSP 1 Score: 130.568 bits (327), Expect = 8.994e-35
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = 0
Query:   91 PNK-IRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSP 214
            PN+ +  T  GVK++ +K G G   R GD+ ++ + G L DG +FD  + PG+KP+AF++G +QVI G EE L  M AG E Q++VPA++AFG+KG+C + G+CLV P  +V+Y++ LKRVA +P
Sbjct:   46 PNRRVFTTDGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGAVFDASNAPGRKPIAFQLGKRQVIKGWEEVLRLMNAGAEVQMVVPANMAFGDKGICIDNGDCLVKPGMDVRYDLQLKRVAPTP 170          
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|1189380733|gb|OSX68862.1| (hypothetical protein BU14_2157s0001, partial [Porphyra umbilicalis])

HSP 1 Score: 117.087 bits (292), Expect = 1.907e-30
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 0
Query:  117 GDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVC--TEKGECLVPPNTNVKYNVILKRVAVSPI 215
            GD VI+ YIG L+DG +FD    PG+KPLA +IG   VIPGLEEA+L MQ GG+R ++VP  L +GE+GVC      +CLVPPN+ ++Y++ L+RV+ SPI
Sbjct:    2 GDLVIVDYIGYLADGRVFDSSSSPGRKPLAIQIGKNTVIPGLEEAVLGMQQGGQRIVIVPPALGYGERGVCLGDAGSDCLVPPNSVIEYDLTLRRVSPSPI 102          
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|546318810|ref|XP_005716850.1| (unnamed protein product [Chondrus crispus] >gi|507113401|emb|CDF37031.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 117.472 bits (293), Expect = 4.947e-28
Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 0
Query:   91 PNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCT-EKGECLVPPNTNVKYNVILKRVAVSP 214
            P  I++  +G+ Y DVK G G  P  GD+V+I Y   LS+G IFD   G       F++G +QVIPGLE A+ +M+ GGER++++P  LA+G++GVC  E  ECLVPP   + Y+V L+RVA+SP
Sbjct:  220 PEYIKDE-SGISYYDVKGGSGAGPINGDFVVIDYQAFLSNGKIFDNRKG-----FVFQMGQRQVIPGLETAVSTMKPGGERKVVIPPTLAYGDRGVCIGESKECLVPPGETLGYSVNLQRVAISP 338          
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|551649633|ref|XP_005827601.1| (FKBP-type peptidyl-prolyl cis-trans isomerase [Guillardia theta CCMP2712] >gi|428171706|gb|EKX40621.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Guillardia theta CCMP2712])

HSP 1 Score: 110.923 bits (276), Expect = 1.083e-26
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 0
Query:  100 GVKYVDVKVGEG------ESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI 215
            G+ YVD K  +G           GD+V+I YI  L DGTIFD     GK P+AF++G KQV+PGL++ ++ M+AG  RQ+ + ++  +G +GVC E   CLVPPNT++ Y+V L  V  SPI
Sbjct:   88 GLSYVDKKKNDGILSGLTAGVNEGDFVVIDYIAYLRDGTIFDNTRKRGK-PVAFQVGKKQVVPGLDQGIIGMKAGEARQIFMKSEFGYGARGVCLEDKGCLVPPNTDLVYDVTLISVGPSPI 208          
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|1072228603|gb|OEU13338.1| (FKBP-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 104.375 bits (259), Expect = 7.195e-25
Identity = 53/123 (43.09%), Postives = 75/123 (60.98%), Query Frame = 0
Query:   94 IRETPNGVKYVDVK-VGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKP-LAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSP 214
            I    NGVKY   K V +G  P+ GD   I Y G LS+G IFD  HG GKK  L FK+G+  V  G+   +  M+ G + Q ++P +LAFG+KG+C + GECLV P   + Y+++LK+ ++ P
Sbjct:   30 IYNLSNGVKYAITKDVAKGSFPQEGDICAIEYTGYLSNGAIFDATHGEGKKSVLLFKLGSSVVNAGINSMVGEMKVGQKVQAIIPPELAFGDKGICLDDGECLVKPGATLVYDILLKKASIPP 152          
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|545707604|ref|XP_005706116.1| (peptidylprolyl isomerase [Galdieria sulphuraria] >gi|452822578|gb|EME29596.1| peptidylprolyl isomerase [Galdieria sulphuraria])

HSP 1 Score: 105.531 bits (262), Expect = 1.242e-24
Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = 0
Query:   59 VALATGGSTATTLAWPLQVLAEESPVKVRKVNP-NKIR--ETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSP 214
            V LA     + +    +Q LA    ++  K++P N +R      G+K  ++  G G  P  GD  ++ Y G LS+G +FD     G+KP+AF  G  QVIPG E  L  M+ GG R L++   LA+GE+GVC E   C +PP   + ++V L R+A SP
Sbjct:   47 VRLALVAFASVSFPLKIQSLAATEQLEALKLSPFNNLRFVTLEPGLKVAEISQGSGPQPLPGDICVVEYTGYLSNGQVFDSTSAKGRKPIAFLYGKGQVIPGWEIGLRDMRPGGRRVLVISPSLAYGEQGVCLEGYGCYIPPKETLVFDVSLVRIAPSP 205          
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|922867335|gb|KOO33995.1| (fkbp-type peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 103.219 bits (256), Expect = 6.819e-24
Identity = 66/149 (44.30%), Postives = 86/149 (57.72%), Query Frame = 0
Query:   77 VLAEESPVKVRKVNPNKIRETPNGVKYVDVKVGEGES-----PRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLA--FKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKG----ECLVPPNTNVKYNVILKRVAVSP 214
            VLAE+     + V  NK+  TP GVKY D   G         P+ GD V I Y   LS+G +FD   GPG+KPLA  +K    Q++PG EEAL +M+ G  R + VPA+LA+GEKGV  E      E LVPPN  ++Y + L +VA+ P
Sbjct:   48 VLAED-----KVVPKNKVGVTPGGVKYFDKVPGSCSPFNPCVPQAGDLVKIKYKAYLSNGQMFDSSEGPGRKPLAAKYKATPPQLLPGWEEALETMEQGSTRIIQVPANLAYGEKGVKVETKDGSVEYLVPPNEKLQYELTLIQVALPP 191          
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|1210516767|dbj|GAX24256.1| (hypothetical protein FisN_4Lh042 [Fistulifera solaris])

HSP 1 Score: 99.7525 bits (247), Expect = 9.325e-23
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 0
Query:   97 TPNGVKYVDVKVGEGESPRG--GDYVIITYIGQLSDGTIFDGLHGPGKK-PLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEK----GECLVPPNTNVKYNVILKRVAVSP 214
            TP+G+KYV  K  + E+P+   GD + I Y G L +G IFD  H  GKK  L F++G   VI G+ E +  M  G +RQ++VPA LAF +KG+C EK     ECL+ P   + Y++ LKR ++ P
Sbjct:   57 TPSGIKYVVTKPPK-EAPKSIKGDIIAIEYTGYLPNGQIFDATHAEGKKNALMFELGGNAVIDGINEMVADMGVGEKRQVIVPASLAFKDKGICVEKEGGENECLIKPGQTLVYDISLKRTSIPP 180          
The following BLAST results are available for this feature:
BLAST of EWM28629.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111048|gb|EWM28629.1|5.975e-154100.00fkbp-type peptidyl-prolyl cis-trans isomerase [Nan... [more]
gi|544218591|ref|XP_005539439.1|6.935e-3950.39similar to FKBP-type peptidyl-prolyl cis-trans iso... [more]
gi|298708415|emb|CBJ48478.1|8.994e-3547.20FK506-binding protein 1 [Ectocarpus siliculosus][more]
gi|1189380733|gb|OSX68862.1|1.907e-3054.46hypothetical protein BU14_2157s0001, partial [Porp... [more]
gi|546318810|ref|XP_005716850.1|4.947e-2847.20unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|551649633|ref|XP_005827601.1|1.083e-2645.08FKBP-type peptidyl-prolyl cis-trans isomerase [Gui... [more]
gi|1072228603|gb|OEU13338.1|7.195e-2543.09FKBP-like protein [Fragilariopsis cylindrus CCMP11... [more]
gi|545707604|ref|XP_005706116.1|1.242e-2437.11peptidylprolyl isomerase [Galdieria sulphuraria] >... [more]
gi|922867335|gb|KOO33995.1|6.819e-2444.30fkbp-type peptidyl-prolyl cis-trans isomerase [Chr... [more]
gi|1210516767|dbj|GAX24256.1|9.325e-2343.20hypothetical protein FisN_4Lh042 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2042rna2042Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications