EWM28629.1, cds2034 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|585111048|gb|EWM28629.1| (fkbp-type peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana]) HSP 1 Score: 434.106 bits (1115), Expect = 5.975e-154 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query: 1 MGASRLLHLCSNLLLLVITTAYVVPSMTTTPTSWARYAKEKGVAVRREAVGFTGMLGAVALATGGSTATTLAWPLQVLAEESPVKVRKVNPNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI 215
MGASRLLHLCSNLLLLVITTAYVVPSMTTTPTSWARYAKEKGVAVRREAVGFTGMLGAVALATGGSTATTLAWPLQVLAEESPVKVRKVNPNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI
Sbjct: 1 MGASRLLHLCSNLLLLVITTAYVVPSMTTTPTSWARYAKEKGVAVRREAVGFTGMLGAVALATGGSTATTLAWPLQVLAEESPVKVRKVNPNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI 215
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|544218591|ref|XP_005539439.1| (similar to FKBP-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D] >gi|449020001|dbj|BAM83403.1| similar to FKBP-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 142.895 bits (359), Expect = 6.935e-39 Identity = 65/129 (50.39%), Postives = 92/129 (71.32%), Query Frame = 0
Query: 87 RKVNPNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI 215
+K++ +K P+GV Y D K G G SP+ GD V+I YIG LSDGTIFD G+KPLAF G KQ++PG+E+ + +M+ GG+R+++VP++L FGE+GVC E CLVPPN + Y+V L RV+++P
Sbjct: 96 QKLDLSKFVRDPSGVLYRDYKEGTGASPKDGDLVVINYIGYLSDGTIFDNTTAKGRKPLAFIFGKKQMVPGVEKGIETMKTGGKRRIIVPSELGFGERGVCIEGQGCLVPPNETLTYDVELMRVSIAPF 224
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|298708415|emb|CBJ48478.1| (FK506-binding protein 1 [Ectocarpus siliculosus]) HSP 1 Score: 130.568 bits (327), Expect = 8.994e-35 Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = 0
Query: 91 PNK-IRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSP 214
PN+ + T GVK++ +K G G R GD+ ++ + G L DG +FD + PG+KP+AF++G +QVI G EE L M AG E Q++VPA++AFG+KG+C + G+CLV P +V+Y++ LKRVA +P
Sbjct: 46 PNRRVFTTDGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGAVFDASNAPGRKPIAFQLGKRQVIKGWEEVLRLMNAGAEVQMVVPANMAFGDKGICIDNGDCLVKPGMDVRYDLQLKRVAPTP 170
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|1189380733|gb|OSX68862.1| (hypothetical protein BU14_2157s0001, partial [Porphyra umbilicalis]) HSP 1 Score: 117.087 bits (292), Expect = 1.907e-30 Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 0
Query: 117 GDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVC--TEKGECLVPPNTNVKYNVILKRVAVSPI 215
GD VI+ YIG L+DG +FD PG+KPLA +IG VIPGLEEA+L MQ GG+R ++VP L +GE+GVC +CLVPPN+ ++Y++ L+RV+ SPI
Sbjct: 2 GDLVIVDYIGYLADGRVFDSSSSPGRKPLAIQIGKNTVIPGLEEAVLGMQQGGQRIVIVPPALGYGERGVCLGDAGSDCLVPPNSVIEYDLTLRRVSPSPI 102
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|546318810|ref|XP_005716850.1| (unnamed protein product [Chondrus crispus] >gi|507113401|emb|CDF37031.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 117.472 bits (293), Expect = 4.947e-28 Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 0
Query: 91 PNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCT-EKGECLVPPNTNVKYNVILKRVAVSP 214
P I++ +G+ Y DVK G G P GD+V+I Y LS+G IFD G F++G +QVIPGLE A+ +M+ GGER++++P LA+G++GVC E ECLVPP + Y+V L+RVA+SP
Sbjct: 220 PEYIKDE-SGISYYDVKGGSGAGPINGDFVVIDYQAFLSNGKIFDNRKG-----FVFQMGQRQVIPGLETAVSTMKPGGERKVVIPPTLAYGDRGVCIGESKECLVPPGETLGYSVNLQRVAISP 338
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|551649633|ref|XP_005827601.1| (FKBP-type peptidyl-prolyl cis-trans isomerase [Guillardia theta CCMP2712] >gi|428171706|gb|EKX40621.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Guillardia theta CCMP2712]) HSP 1 Score: 110.923 bits (276), Expect = 1.083e-26 Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 0
Query: 100 GVKYVDVKVGEG------ESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI 215
G+ YVD K +G GD+V+I YI L DGTIFD GK P+AF++G KQV+PGL++ ++ M+AG RQ+ + ++ +G +GVC E CLVPPNT++ Y+V L V SPI
Sbjct: 88 GLSYVDKKKNDGILSGLTAGVNEGDFVVIDYIAYLRDGTIFDNTRKRGK-PVAFQVGKKQVVPGLDQGIIGMKAGEARQIFMKSEFGYGARGVCLEDKGCLVPPNTDLVYDVTLISVGPSPI 208
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|1072228603|gb|OEU13338.1| (FKBP-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 104.375 bits (259), Expect = 7.195e-25 Identity = 53/123 (43.09%), Postives = 75/123 (60.98%), Query Frame = 0
Query: 94 IRETPNGVKYVDVK-VGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKP-LAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSP 214
I NGVKY K V +G P+ GD I Y G LS+G IFD HG GKK L FK+G+ V G+ + M+ G + Q ++P +LAFG+KG+C + GECLV P + Y+++LK+ ++ P
Sbjct: 30 IYNLSNGVKYAITKDVAKGSFPQEGDICAIEYTGYLSNGAIFDATHGEGKKSVLLFKLGSSVVNAGINSMVGEMKVGQKVQAIIPPELAFGDKGICLDDGECLVKPGATLVYDILLKKASIPP 152
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|545707604|ref|XP_005706116.1| (peptidylprolyl isomerase [Galdieria sulphuraria] >gi|452822578|gb|EME29596.1| peptidylprolyl isomerase [Galdieria sulphuraria]) HSP 1 Score: 105.531 bits (262), Expect = 1.242e-24 Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = 0
Query: 59 VALATGGSTATTLAWPLQVLAEESPVKVRKVNP-NKIR--ETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSP 214
V LA + + +Q LA ++ K++P N +R G+K ++ G G P GD ++ Y G LS+G +FD G+KP+AF G QVIPG E L M+ GG R L++ LA+GE+GVC E C +PP + ++V L R+A SP
Sbjct: 47 VRLALVAFASVSFPLKIQSLAATEQLEALKLSPFNNLRFVTLEPGLKVAEISQGSGPQPLPGDICVVEYTGYLSNGQVFDSTSAKGRKPIAFLYGKGQVIPGWEIGLRDMRPGGRRVLVISPSLAYGEQGVCLEGYGCYIPPKETLVFDVSLVRIAPSP 205
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|922867335|gb|KOO33995.1| (fkbp-type peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 103.219 bits (256), Expect = 6.819e-24 Identity = 66/149 (44.30%), Postives = 86/149 (57.72%), Query Frame = 0
Query: 77 VLAEESPVKVRKVNPNKIRETPNGVKYVDVKVGEGES-----PRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLA--FKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKG----ECLVPPNTNVKYNVILKRVAVSP 214
VLAE+ + V NK+ TP GVKY D G P+ GD V I Y LS+G +FD GPG+KPLA +K Q++PG EEAL +M+ G R + VPA+LA+GEKGV E E LVPPN ++Y + L +VA+ P
Sbjct: 48 VLAED-----KVVPKNKVGVTPGGVKYFDKVPGSCSPFNPCVPQAGDLVKIKYKAYLSNGQMFDSSEGPGRKPLAAKYKATPPQLLPGWEEALETMEQGSTRIIQVPANLAYGEKGVKVETKDGSVEYLVPPNEKLQYELTLIQVALPP 191
BLAST of EWM28629.1 vs. NCBI_GenBank
Match: gi|1210516767|dbj|GAX24256.1| (hypothetical protein FisN_4Lh042 [Fistulifera solaris]) HSP 1 Score: 99.7525 bits (247), Expect = 9.325e-23 Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 0
Query: 97 TPNGVKYVDVKVGEGESPRG--GDYVIITYIGQLSDGTIFDGLHGPGKK-PLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEK----GECLVPPNTNVKYNVILKRVAVSP 214
TP+G+KYV K + E+P+ GD + I Y G L +G IFD H GKK L F++G VI G+ E + M G +RQ++VPA LAF +KG+C EK ECL+ P + Y++ LKR ++ P
Sbjct: 57 TPSGIKYVVTKPPK-EAPKSIKGDIIAIEYTGYLPNGQIFDATHAEGKKNALMFELGGNAVIDGINEMVADMGVGEKRQVIVPASLAFKDKGICVEKEGGENECLIKPGQTLVYDISLKRTSIPP 180 The following BLAST results are available for this feature:
BLAST of EWM28629.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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