EWM28633.1, cds2033 (CDS) Nannochloropsis gaditana

Overview
NameEWM28633.1
Unique Namecds2033
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:759167..759223 -
Alignment locationCM002458.1:758898..759004 -
Alignment locationCM002458.1:758644..758793 -
Alignment locationCM002458.1:758463..758560 -
Alignment locationCM002458.1:758107..758243 -
Alignment locationCM002458.1:757922..757989 -
Alignment locationCM002458.1:757750..757812 -
Alignment locationCM002458.1:757430..757652 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28633.1
Productpseudouridine synthase and archaeosine transglycosylase domain-containing protein
Orig transcript idgnl|cribi|Naga_100182g4.943.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:759167..759223 -
CM002458.1supercontigCM002458.1:758898..759004 -
CM002458.1supercontigCM002458.1:758644..758793 -
CM002458.1supercontigCM002458.1:758463..758560 -
CM002458.1supercontigCM002458.1:758107..758243 -
CM002458.1supercontigCM002458.1:757922..757989 -
CM002458.1supercontigCM002458.1:757750..757812 -
CM002458.1supercontigCM002458.1:757430..757652 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR016437Transl_RNA-bd_prd
IPR015947PUA-like_domain
IPR004521Uncharacterised_CHP00451
IPR002478PUA
Homology
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|585111052|gb|EWM28633.1| (pseudouridine synthase and archaeosine transglycosylase domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MSWCHKTPLRRGFQFPFQSGFITLWIVRNLSVKLSVAVKLPLLSTHSCTTRMFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLWSRSTKRGDSASVRSHNKACLHCATATQFLLLQIRCKRKTEEGKIKRGNVSQNTKKQFAVSEGDRASWNFQVRNK 300
            MSWCHKTPLRRGFQFPFQSGFITLWIVRNLSVKLSVAVKLPLLSTHSCTTRMFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLWSRSTKRGDSASVRSHNKACLHCATATQFLLLQIRCKRKTEEGKIKRGNVSQNTKKQFAVSEGDRASWNFQVRNK
Sbjct:    1 MSWCHKTPLRRGFQFPFQSGFITLWIVRNLSVKLSVAVKLPLLSTHSCTTRMFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLWSRSTKRGDSASVRSHNKACLHCATATQFLLLQIRCKRKTEEGKIKRGNVSQNTKKQFAVSEGDRASWNFQVRNK 300          
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|116779961|gb|ABK21496.1| (unknown [Picea sitchensis])

HSP 1 Score: 240.736 bits (613), Expect = 1.211e-76
Identity = 103/175 (58.86%), Postives = 141/175 (80.57%), Query Frame = 0
Query:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226
            MFK+F+ ++ SS  QVK+SVQR IR SI E+YP LE V+ED+ PKK+ ++V KC  H+ ++++N  PLFF++RDG + PTLRLLHQYP  M+++QVD+GAI+F+L GA+IMCPGLTS GG +++D+PAE PVA+ AEGKE  LA+G TKMSA +I+  NKGI ++ +H+LNDGLW
Sbjct:    1 MFKKFSSEEISSQNQVKASVQRKIRQSIAEEYPDLEPVLEDLLPKKSPLIVAKCQNHINLILVNNVPLFFNVRDGPYMPTLRLLHQYPNIMKKMQVDRGAIKFVLAGANIMCPGLTSPGGALDDDIPAESPVAVMAEGKENALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175          
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|1150741419|ref|XP_020244808.1| (malignant T-cell-amplified sequence 1 homolog [Asparagus officinalis] >gi|1141978896|gb|ONK60120.1| uncharacterized protein A4U43_C08F14530 [Asparagus officinalis])

HSP 1 Score: 239.195 bits (609), Expect = 4.290e-76
Identity = 105/175 (60.00%), Postives = 141/175 (80.57%), Query Frame = 0
Query:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226
            MFK+F  +D S+  QVK+SVQR IR SI ++YP LE +M+D+ PKK+ ++VVKC  H+ +VV+N  PLFF++RDG + PTLRLLHQYP  M+++QVD+GAI+F+L GA+IMCPGLTS GG +++D+PAE PVAI AEGK+  LA+G TKMSA +IR  NKGI ++ +H+LNDGLW
Sbjct:    1 MFKKFTFEDISAQNQVKASVQRKIRQSITDEYPGLEPLMDDLLPKKSPLIVVKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPDIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDDDVPAESPVAIMAEGKQHALAIGFTKMSAKDIRAINKGIGVDNMHYLNDGLW 175          
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|659099455|ref|XP_008450609.1| (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Cucumis melo])

HSP 1 Score: 238.424 bits (607), Expect = 9.506e-76
Identity = 106/175 (60.57%), Postives = 140/175 (80.00%), Query Frame = 0
Query:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226
            MFK+F+ +D S+  QVK+SVQR IR SI E+YP LE V++D+ PKKA ++V KC  H+ +VV+N  PLFF++RDG + PTLRLLHQYP  MR++QVD+GAI+F+L GA+IMCPGLTS GG +++++ AE PVAI AEGK+  LA+G TKMSA EIR  NKGI ++ +H+LNDGLW
Sbjct:    1 MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMRKLQVDRGAIKFVLAGANIMCPGLTSPGGVLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLW 175          
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|1063504490|ref|XP_017977011.1| (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Theobroma cacao])

HSP 1 Score: 238.039 bits (606), Expect = 1.392e-75
Identity = 106/175 (60.57%), Postives = 140/175 (80.00%), Query Frame = 0
Query:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226
            MFK+F+ +D SS  QVK+SVQR IR SI E+YP LE V++D+ PKKA ++V KC  H+ +V++N  PLFF++RDG + PTLRLLHQYP  M+++QVD+GAIRF+L GA+IMCPGLTS GG ++E++ AE PVAI AEGK+  LA+G TKMSA +IR  NKGI ++ +H+LNDGLW
Sbjct:    1 MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVAKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGALDEEVDAETPVAIMAEGKQHALAIGFTKMSAKDIRAINKGIGVDNMHYLNDGLW 175          
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|727431541|ref|XP_010489730.1| (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Camelina sativa] >gi|727571273|ref|XP_010458182.1| PREDICTED: malignant T-cell-amplified sequence 1 homolog isoform X1 [Camelina sativa] >gi|727605333|ref|XP_010475737.1| PREDICTED: malignant T-cell-amplified sequence 1 homolog [Camelina sativa])

HSP 1 Score: 238.039 bits (606), Expect = 1.694e-75
Identity = 108/175 (61.71%), Postives = 140/175 (80.00%), Query Frame = 0
Query:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226
            MFK+F  ++ SS  QVK+SVQR IR SI ++YP LE+VMED+ PKK  ++VVKCP H+ +VV+N  PLFF +RDG + PTLRLLHQYP  MR  QVD+GAI+F+L GA+IMCPGLTS GG ++E++ AE+PVAI AEGK+  LA+G TKMSA +I+G NKGI ++ +H+LNDGLW
Sbjct:    1 MFKKFCLEEISSQNQVKASVQRRIRQSIQDEYPGLETVMEDLLPKKIPLIVVKCPNHLTLVVVNNVPLFFCIRDGPYMPTLRLLHQYPNIMRRFQVDRGAIKFVLSGANIMCPGLTSPGGVLDEEVDAERPVAIYAEGKQHALAIGFTKMSAKDIKGINKGIGVDTMHYLNDGLW 175          
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|778662403|ref|XP_011659846.1| (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Cucumis sativus] >gi|700210953|gb|KGN66049.1| hypothetical protein Csa_1G569260 [Cucumis sativus])

HSP 1 Score: 237.269 bits (604), Expect = 2.985e-75
Identity = 105/175 (60.00%), Postives = 140/175 (80.00%), Query Frame = 0
Query:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226
            MFK+F+ +D S+  QVK+SVQR IR SI E+YP LE V++D+ PKKA ++V KC  H+ +VV+N  PLFF++RDG + PTLRLLHQYP  M+++QVD+GAI+F+L GA+IMCPGLTS GG +++++ AE PVAI AEGK+  LA+G TKMSA EIR  NKGI ++ +H+LNDGLW
Sbjct:    1 MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGVLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLW 175          
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|168480809|gb|ACA24498.1| (pseudouridine synthase and archaeosine transglycosylase-like protein [Cucumis sativus])

HSP 1 Score: 237.269 bits (604), Expect = 3.293e-75
Identity = 105/175 (60.00%), Postives = 140/175 (80.00%), Query Frame = 0
Query:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226
            MFK+F+ +D S+  QVK+SVQR IR SI E+YP LE V++D+ PKKA ++V KC  H+ +VV+N  PLFF++RDG + PTLRLLHQYP  M+++QVD+GAI+F+L GA+IMCPGLTS GG +++++ AE PVAI AEGK+  LA+G TKMSA EIR  NKGI ++ +H+LNDGLW
Sbjct:    1 MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGVLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIEVDNMHYLNDGLW 175          
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|1204902165|ref|XP_021283272.1| (malignant T-cell-amplified sequence 1 homolog [Herrania umbratica])

HSP 1 Score: 236.884 bits (603), Expect = 4.140e-75
Identity = 105/175 (60.00%), Postives = 140/175 (80.00%), Query Frame = 0
Query:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226
            MFK+F+ +D SS  QVK+SVQR IR SI E+YP LE V++D+ PKKA ++V KC  H+ +V++N  PLFF++RDG + PTLRLLHQYP  M+++QVD+GAIRF+L GA+IMCPGLTS GG +++++ AE PVAI AEGK+  LA+G TKMSA +IR  NKGI ++ +H+LNDGLW
Sbjct:    1 MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVAKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGALDDEVDAETPVAIMAEGKQHALAIGFTKMSAKDIRAINKGIGVDNMHYLNDGLW 175          
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|729307445|ref|XP_010528903.1| (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Tarenaya hassleriana])

HSP 1 Score: 236.498 bits (602), Expect = 5.377e-75
Identity = 105/175 (60.00%), Postives = 139/175 (79.43%), Query Frame = 0
Query:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226
            MFK+F+ ++ SS  QVK+SVQR IR SI ++YP LE V++D+ PKKA ++VVKCP H+ +VV+N  PLFF +RDG + PTLRLLHQYP  M+  QVD+GAI+F+L GA+IMCPGLTS GG M+E + AE+PVA+ AEGK+  LA+G TKMSA +I+  NKGI ++ +H+LNDGLW
Sbjct:    1 MFKKFSSEEVSSQNQVKASVQRKIRQSIQDEYPELEPVLDDLLPKKAPLIVVKCPNHLSLVVINNVPLFFCIRDGPYMPTLRLLHQYPNIMKRFQVDRGAIKFVLSGANIMCPGLTSPGGIMDEQVEAERPVAVYAEGKQHALAIGFTKMSAKDIKSINKGIGVDNMHYLNDGLW 175          
The following BLAST results are available for this feature:
BLAST of EWM28633.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111052|gb|EWM28633.1|0.000e+0100.00pseudouridine synthase and archaeosine transglycos... [more]
gi|116779961|gb|ABK21496.1|1.211e-7658.86unknown [Picea sitchensis][more]
gi|1150741419|ref|XP_020244808.1|4.290e-7660.00malignant T-cell-amplified sequence 1 homolog [Asp... [more]
gi|659099455|ref|XP_008450609.1|9.506e-7660.57PREDICTED: malignant T-cell-amplified sequence 1 h... [more]
gi|1063504490|ref|XP_017977011.1|1.392e-7560.57PREDICTED: malignant T-cell-amplified sequence 1 h... [more]
gi|727431541|ref|XP_010489730.1|1.694e-7561.71PREDICTED: malignant T-cell-amplified sequence 1 h... [more]
gi|778662403|ref|XP_011659846.1|2.985e-7560.00PREDICTED: malignant T-cell-amplified sequence 1 h... [more]
gi|168480809|gb|ACA24498.1|3.293e-7560.00pseudouridine synthase and archaeosine transglycos... [more]
gi|1204902165|ref|XP_021283272.1|4.140e-7560.00malignant T-cell-amplified sequence 1 homolog [Her... [more]
gi|729307445|ref|XP_010528903.1|5.377e-7560.00PREDICTED: malignant T-cell-amplified sequence 1 h... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2041rna2041Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications