EWM28727.1, cds2000 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28727.1 vs. NCBI_GenBank
Match: gi|585111150|gb|EWM28727.1| (Mitochondrial carrier domain protein [Nannochloropsis gaditana]) HSP 1 Score: 936.791 bits (2420), Expect = 0.000e+0 Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 0 Query: 1 MRSQRIATGQVRRCRRMLTGADRKKTRLWRKRQVGAARFPQKKIGKWRRRRSLNQCPRRQACPRRAPPPPSQKTIIDIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAIRAPAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQIRKEEGSEGKMMGGERNGLDGSGMCESDRAQDCCSLFHFSPSHLRGACIVLSCTTGLQSIVFTVVWRALSESAFFQSMIESQYEDDDDGAGEDSEASDGAERAHGVQESSQGKTGKTPS 456 MRSQRIATGQVRRCRRMLTGADRKKTRLWRKRQVGAARFPQKKIGKWRRRRSLNQCPRRQACPRRAPPPPSQKTIIDIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAIRAPAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQIRKEEGSEGKMMGGERNGLDGSGMCESDRAQDCCSLFHFSPSHLRGACIVLSCTTGLQSIVFTVVWRALSESAFFQSMIESQYEDDDDGAGEDSEASDGAERAHGVQESSQGKTGKTPS Sbjct: 1 MRSQRIATGQVRRCRRMLTGADRKKTRLWRKRQVGAARFPQKKIGKWRRRRSLNQCPRRQACPRRAPPPPSQKTIIDIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAIRAPAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQIRKEEGSEGKMMGGERNGLDGSGMCESDRAQDCCSLFHFSPSHLRGACIVLSCTTGLQSIVFTVVWRALSESAFFQSMIESQYEDDDDGAGEDSEASDGAERAHGVQESSQGKTGKTPS 456
BLAST of EWM28727.1 vs. NCBI_GenBank
Match: gi|1072232107|gb|OEU16839.1| (mitochondrial carrier [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 290.812 bits (743), Expect = 4.252e-92 Identity = 139/260 (53.46%), Postives = 186/260 (71.54%), Query Frame = 0 Query: 78 IFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAIRAPAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQ 337 IFR AG++ALGGG+PGA+AG++QV+TLMWLRT+ NYQ RYG SF AV LYK+GG+GRFY G+GFAL Q P+S+F +TA+NDG A L +F ++ V T A+L G +R+FLMPIDT KTVLQV+ EG+R+LMRR+ G++SA YQG+LATAA++ +GH+PWF + N FIG +S+++DT+ NV RV+KTTKQ+ S +Y+ T+++I+AADGW GLFGRGL TR+L N Q Sbjct: 12 IFRKAGRKALGGGLPGAVAGVVQVLTLMWLRTIINYQSRYGASFRRAVNILYKEGGIGRFYRGVGFALFQAPMSKFVATASNDGVLAFLSSFPLSKHWNPAVTTIFASLFVGGFRMFLMPIDTCKTVLQVDSREGFRALMRRVRAGKISALYQGALATAASSTIGHYPWFVTF-------------------NFFIGLTSSVISDTIVNVFRVIKTTKQSIGSKHDFTYSDTIRMIVAADGWKGLFGRGLRTRVLANSIQ 252
BLAST of EWM28727.1 vs. NCBI_GenBank
Match: gi|219110042|ref|XP_002176773.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411308|gb|EEC51236.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 288.115 bits (736), Expect = 1.917e-90 Identity = 148/289 (51.21%), Postives = 192/289 (66.44%), Query Frame = 0 Query: 51 RSLNQCPRRQACPRRAPPPPSQKTII--DIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAIRAPAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQ 337 +S + R + R P +QKT+ I AG++ LGGGIPGALAG++QVVTLMWLRT+ NYQ RYGT+F +A+ TL ++GGVGR Y G+ FALIQ PL+RFGSTAANDG A + NFE TR T +A++ G WR+ +MPIDT KTVLQV+ EG+R+LMRR+ G+L+ YQG+ A A AA +GH+PW A IG VAS+V+DT+ N +RV+KT KQ+ S SISY++T++++LAADGW GLFGRGL TRI N Q Sbjct: 69 KSKQRSLRINSSNRAQNPTANQKTMTLNQILIKAGRKGLGGGIPGALAGIVQVVTLMWLRTIINYQCRYGTTFRQALVTLLREGGVGRLYRGVAFALIQAPLARFGSTAANDGVEAFVSNFEPTRNWGPGRTTIVASIVVGGWRMLIMPIDTMKTVLQVDSAEGFRNLMRRLKSGKLNVLYQGAFANAIAAIVGHYPW-----------------------RAGIGLVASVVSDTVVNCIRVIKTNKQSLGSKHSISYSETIRMVLAADGWKGLFGRGLRTRIFANALQ 334
BLAST of EWM28727.1 vs. NCBI_GenBank
Match: gi|929754464|ref|XP_014152214.1| (hypothetical protein SARC_09248 [Sphaeroforma arctica JP610] >gi|906946802|gb|KNC78312.1| hypothetical protein SARC_09248 [Sphaeroforma arctica JP610]) HSP 1 Score: 279.256 bits (713), Expect = 9.302e-88 Identity = 143/268 (53.36%), Postives = 184/268 (68.66%), Query Frame = 0 Query: 72 QKTIIDIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAIRAPAG--WLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQ 337 +K++ +I AGKRA+GGG+PGA+A + V +LMWLRT NYQYRYGTS TEA LYK+GG+ RFY G G AL QGPLSRFG TAAN G ALL +++ T LP+ V T A+ AA +WR+FLMP+DT KT +QVEG +G L +++ G Y G++A + A +GH+PWF+VY LL E + L KL RNA IGF AS+V+DT +N +RVVKTTKQ A +SY +TV++++ DG GLFGRGL TRIL N Q Sbjct: 15 KKSLQEILTAAGKRAIGGGVPGAVAMGINVTSLMWLRTTMNYQYRYGTSTTEAFKHLYKEGGIRRFYRGYGPALFQGPLSRFGDTAANAGVLALLDSYDTTSNLPVGVKTIFASAAAATWRVFLMPVDTLKTTMQVEGAKGVSQLRGKLSSGGPKVLYSGAIAASGATFVGHYPWFFVYNLLQEKLPKAEKDETLKKLGRNAVIGFCASVVSDTCSNSIRVVKTTKQTAA--VQMSYPETVKMVIKQDGLIGLFGRGLKTRILANAMQ 280
BLAST of EWM28727.1 vs. NCBI_GenBank
Match: gi|299470628|emb|CBN78569.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 269.626 bits (688), Expect = 8.507e-84 Identity = 134/269 (49.81%), Postives = 184/269 (68.40%), Query Frame = 0 Query: 69 PPSQKTIIDIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAIRAPAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQ 337 PP+ + I+D + KRALGGG GALA + V TLMW+RT NYQ R+G +A TLY QGG+GRFY G+G ALIQGP+SRFG TAAN G AL++++E+T+ LP+ T A++AA WRIFLMP+DT KT++QVEG EG+ +L++++ G + Y G+LA ++A +GH+PWF+ Y L E I + KL RN IGF +S+V+DT +N +RVVK KQ+ ++Y Q V+ ++A DG GLFGRGL T+I+ NG Q Sbjct: 9 PPTTQEILDK---SLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYESTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTIMQVEGKEGFPALVKKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQSHT--EGVTYVQAVRDVIAKDGLVGLFGRGLKTKIMANGMQ 272
BLAST of EWM28727.1 vs. NCBI_GenBank
Match: gi|1210526644|dbj|GAX14602.1| (hypothetical protein FisN_6Lh384 [Fistulifera solaris]) HSP 1 Score: 271.166 bits (692), Expect = 2.681e-83 Identity = 144/276 (52.17%), Postives = 190/276 (68.84%), Query Frame = 0 Query: 63 PRRAPPPPSQK-TIIDIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAIRAPAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQ 337 P +A P Q+ ++ I AG+R LGGGIPGA+AGM+QV +LMWLRT+ NYQYRYGT+F +A TL ++GG+ R Y G FALIQ PL+RF STAANDG +L+ + T+ T +A++ G WR+ LMPIDT KTVLQV+ EG+RSL+RR+ G + +QG+ AT +A LGH+PWFY Y LLN++ A RNA IG +AS+V+DT+ N MRV+KTTKQ+ S ++Y++ ++IILA DGW GLFGRGL TRI N Q Sbjct: 102 PDKADIVPQQRRSLNQILISAGRRGLGGGIPGAIAGMIQVASLMWLRTISNYQYRYGTTFVQAFKTLMREGGIARLYRGFFFALIQAPLARFVSTAANDGVDSLMASLTYTQNWGPGRKTFVASIFVGFWRMILMPIDTMKTVLQVDSVEGFRSLIRRLRNGRIDVLFQGATATCVSAILGHYPWFYTYHLLNDSQWLQAIIPRPFLRNAGIGLIASIVSDTVVNFMRVIKTTKQSLGSKHGVTYSEVIEIILATDGWRGLFGRGLRTRIFANALQ 377
BLAST of EWM28727.1 vs. NCBI_GenBank
Match: gi|159479674|ref|XP_001697915.1| (hypothetical protein CHLREDRAFT_151480 [Chlamydomonas reinhardtii] >gi|158274013|gb|EDO99798.1| predicted protein [Chlamydomonas reinhardtii]) HSP 1 Score: 267.7 bits (683), Expect = 1.338e-82 Identity = 140/272 (51.47%), Postives = 184/272 (67.65%), Query Frame = 0 Query: 68 PPPSQKTIIDIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAI-RAPAGWL-GKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQ 337 P PS K + + AG +ALGGG+PG A QV++LMWLRT NYQYRYGT T A+ TLYK+GGV RFY GL A++QGPLSRFG TAAN G +LL + +T GLP+ V T +A+ AAG +R+ LMP+DT KT++QVEG + +L R++A G Y G+LA+AAA +GH+PWF Y LN + +APA L KL R+A +GF +S V+D +N +RV+KTTKQ T +SY Q ++I+ DG GL GRGL T+I+ NG Q Sbjct: 18 PAPSPKPLGQVLADAGNKALGGGLPGMAAMATQVLSLMWLRTTINYQYRYGTDTTTALRTLYKEGGVRRFYRGLLPAMVQGPLSRFGDTAANAGTLSLLDAYPSTAGLPVGVKTLVASTAAGCFRVLLMPVDTVKTIMQVEGKDAVAALWRKVATGGPGVLYHGALASAAATFVGHYPWFATYNYLNAVLPKAPADDLKAKLGRSAIMGFCSSFVSDCCSNSIRVIKTTKQTTR--EPMSYPQVARMIIEKDGVLGLMGRGLKTKIIANGLQ 287
BLAST of EWM28727.1 vs. NCBI_GenBank
Match: gi|1004133741|gb|KXZ41947.1| (hypothetical protein GPECTOR_237g559 [Gonium pectorale]) HSP 1 Score: 265.774 bits (678), Expect = 3.538e-81 Identity = 140/287 (48.78%), Postives = 193/287 (67.25%), Query Frame = 0 Query: 52 SLNQCPRRQACPRRAPPPPSQKTIIDIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAI-RAPAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQ 337 S++ P +Q A P +K++ +I +AGK+AL GG+PG +A +QV++LMWLRT NYQYRYGT+ A+ TLY QGG+ RFY+GL ALIQGPLSRFG TAAN G ALL++ + +P+ V T A+L AG +RIFLMP+D KT+LQVEG G+ +LM ++ G + Y G+LA + A +GH+PWF Y LN + R KL R+AFIGF +S V+D +N +RV+KTTKQ TA++ ++Y + V+ I+ DG GLF RGL T+I++NG Q Sbjct: 91 SVSAPPAKQEA-GTAAPAKKKKSLGEIVSVAGKKALSGGVPGMIAMALQVLSLMWLRTTINYQYRYGTTTLVALKTLYAQGGIPRFYQGLAPALIQGPLSRFGDTAANTGVLALLEDVD----IPVPVKTVAASLGAGLFRIFLMPVDAVKTILQVEGANGFAALMHKVKVGGPTVLYHGALAASVATFVGHYPWFATYNSLNSILPRYEDDLPKKLLRSAFIGFCSSFVSDCCSNSIRVIKTTKQ-TATV-PVTYTEVVKEIIKKDGVSGLFFRGLGTKIISNGVQ 370
BLAST of EWM28727.1 vs. NCBI_GenBank
Match: gi|873220207|emb|CEM36155.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 261.151 bits (666), Expect = 3.008e-80 Identity = 135/262 (51.53%), Postives = 175/262 (66.79%), Query Frame = 0 Query: 78 IFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAIRA--PAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQ 337 I + + KRA+GGG+ G+ A ++QV +LMWLRT NYQY G +ATL+ +GGV RFY GL FAL+Q PLS+FG TAAN G ALL +FE+T GLPLFV TA A++AAG WRI + P+DT KT +QV G G + ++ + Y G++A +AA +GH+PWF+ Y L E + P L KL RNAFIG AS +AD+L+N +RV+KTTKQ S S SY + V I+ DG GLFGRGL+TR+LTNG Q Sbjct: 63 ILQKSAKRAVGGGLSGSAASVLQVFSLMWLRTSMNYQYTTGLPLNTTLATLWSEGGVPRFYRGLPFALVQAPLSKFGDTAANAGVLALLDSFESTMGLPLFVKTASASVAAGLWRIVIFPVDTFKTTMQVRGAAGIPQVSDKVKETGPTVLYNGAIAASAATFVGHYPWFFTYNYLQEHLPPVEPGDTLMKLMRNAFIGLCASSLADSLSNSLRVIKTTKQ--TSEDSPSYREVVSGIIEKDGVRGLFGRGLATRLLTNGVQ 322
BLAST of EWM28727.1 vs. NCBI_GenBank
Match: gi|302853064|ref|XP_002958049.1| (mitochondrial substrate carrier [Volvox carteri f. nagariensis] >gi|300256627|gb|EFJ40889.1| mitochondrial substrate carrier [Volvox carteri f. nagariensis]) HSP 1 Score: 262.307 bits (669), Expect = 6.539e-80 Identity = 135/268 (50.37%), Postives = 189/268 (70.52%), Query Frame = 0 Query: 71 SQKTIIDIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAI-RAPAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQ 337 ++K+I ++ +AGK+AL GG+PG +A +QV++LMWLRT NYQYRYGT+ EA+ TLY QGG+ RFY+GL ALIQGPLSRFG TAAN G ALL++ + +P+ T A+LAAG++RI LMP+D KT+LQVEG G+++L+ ++ G + + G+LA +AA +GH+PWF Y LN + + KL R+AFIGF +S V+D +N +RVVKTTKQ TA++ ++Y + ++ IL DG GLF RGL T+I+TNG Q Sbjct: 110 NKKSIGEVISLAGKKALSGGVPGMVAMAIQVLSLMWLRTTINYQYRYGTTTMEALKTLYAQGGIPRFYQGLLPALIQGPLSRFGDTAANTGMLALLEDVD----MPVAFKTLAASLAAGAFRIVLMPVDACKTILQVEGKSGFKALVHKVQIGGPTVLFHGALAASAATFVGHYPWFATYNTLNSMLPKYDEDLPKKLLRSAFIGFCSSFVSDCCSNSIRVVKTTKQ-TATV-PMTYGEVIKEILKKDGPSGLFLRGLGTKIITNGIQ 371 The following BLAST results are available for this feature:
BLAST of EWM28727.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|