EWM28665.1, cds1995 (CDS) Nannochloropsis gaditana

Overview
NameEWM28665.1
Unique Namecds1995
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:662712..662798 +
Alignment locationCM002458.1:663047..663221 +
Alignment locationCM002458.1:663469..663814 +
Alignment locationCM002458.1:663858..663959 +
Alignment locationCM002458.1:664009..664069 +
Alignment locationCM002458.1:664624..665202 +
Alignment locationCM002458.1:665839..666254 +
Alignment locationCM002458.1:666389..666488 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28665.1
Productdna-directed rna polymerase i subunit
Orig transcript idgnl|cribi|Naga_100002g18.4784.mrna
GeneLHCP33
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:662712..662798 +
CM002458.1supercontigCM002458.1:663047..663221 +
CM002458.1supercontigCM002458.1:663469..663814 +
CM002458.1supercontigCM002458.1:663858..663959 +
CM002458.1supercontigCM002458.1:664009..664069 +
CM002458.1supercontigCM002458.1:664624..665202 +
CM002458.1supercontigCM002458.1:665839..666254 +
CM002458.1supercontigCM002458.1:666389..666488 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008270zinc ion binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0009507chloroplast
GO:0009579thylakoid
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR015699DNA-dir_RNA_pol1_lsu
IPR023329Chlorophyll_a/b-bd_dom
IPR000722RNA_pol_asu
IPR007080RNA_pol_Rpb1_1
IPR022796Chloroa_b-bind
IPR006592RNA_pol_N
Homology
BLAST of EWM28665.1 vs. NCBI_GenBank
Match: gi|585111088|gb|EWM28665.1| (dna-directed rna polymerase i subunit [Nannochloropsis gaditana])

HSP 1 Score: 1275.77 bits (3300), Expect = 0.000e+0
Identity = 621/621 (100.00%), Postives = 621/621 (100.00%), Query Frame = 0
Query:    1 MKFLALATIVSTASAFLAPVPMHTRTQGRMYMADQAPVDEEVRSIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKHGRVAMLAVVGVLVQELYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFEGRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQASISDKPILEQTFDNRATTPPLARGGGDPLPHPLTAVFSPGPLFFYNRYRPCVSVIKTEIKAPSGLALFGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQALFRADLHRSTILRDTEMRLRRHLQTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSAPKTTNAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQRVRHESVPVIKASITITPVLPINHGESNQHQIPQ 621
            MKFLALATIVSTASAFLAPVPMHTRTQGRMYMADQAPVDEEVRSIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKHGRVAMLAVVGVLVQELYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFEGRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQASISDKPILEQTFDNRATTPPLARGGGDPLPHPLTAVFSPGPLFFYNRYRPCVSVIKTEIKAPSGLALFGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQALFRADLHRSTILRDTEMRLRRHLQTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSAPKTTNAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQRVRHESVPVIKASITITPVLPINHGESNQHQIPQ
Sbjct:    1 MKFLALATIVSTASAFLAPVPMHTRTQGRMYMADQAPVDEEVRSIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKHGRVAMLAVVGVLVQELYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFEGRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQASISDKPILEQTFDNRATTPPLARGGGDPLPHPLTAVFSPGPLFFYNRYRPCVSVIKTEIKAPSGLALFGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQALFRADLHRSTILRDTEMRLRRHLQTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSAPKTTNAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQRVRHESVPVIKASITITPVLPINHGESNQHQIPQ 621          
BLAST of EWM28665.1 vs. NCBI_GenBank
Match: gi|553189308|ref|XP_005854974.1| (light-harvesting protein [Nannochloropsis gaditana CCMP526] >gi|422294085|gb|EKU21385.1| light-harvesting protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 390.963 bits (1003), Expect = 8.644e-131
Identity = 194/203 (95.57%), Postives = 195/203 (96.06%), Query Frame = 0
Query:    1 MKFLALATIVSTASAFLAPVPMHTRTQGRMYMADQAPVDEEVRSIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKHGRVAMLAVVGVLVQELYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFEGRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQASISDKPILEQTFD 203
            MKFLALATIVSTASAFLAPVPMHTRTQGRMYMADQAPVDEEVRSIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKH        VGVLVQELYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFEGRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQASISDKPILEQTF+
Sbjct:    1 MKFLALATIVSTASAFLAPVPMHTRTQGRMYMADQAPVDEEVRSIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKH--------VGVLVQELYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFEGRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQASISDKPILEQTFE 195          
BLAST of EWM28665.1 vs. NCBI_GenBank
Match: gi|553189301|ref|XP_005854973.1| (DNA-directed RNA polymerase I subunit RPA1 [Nannochloropsis gaditana CCMP526] >gi|422294084|gb|EKU21384.1| DNA-directed RNA polymerase I subunit RPA1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 417.157 bits (1071), Expect = 2.433e-125
Identity = 195/199 (97.99%), Postives = 196/199 (98.49%), Query Frame = 0
Query:  258 FGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQALFRADLHRSTILRDTEMRLRRHLQTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSAPKTTNAVNGY 456
            FGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQALFRADLHRSTILRDTEMRLRRHLQTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSAPKTT   +GY
Sbjct:   24 FGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQALFRADLHRSTILRDTEMRLRRHLQTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSAPKTTVRKDGY 222          

HSP 2 Score: 285.804 bits (730), Expect = 1.168e-79
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0
Query:  451 NAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQRV-RH 591
            NAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQ V RH
Sbjct:  429 NAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQTVWRH 570          
BLAST of EWM28665.1 vs. NCBI_GenBank
Match: gi|873220484|emb|CEM35487.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 214.157 bits (544), Expect = 8.046e-62
Identity = 118/221 (53.39%), Postives = 145/221 (65.61%), Query Frame = 0
Query:   10 VSTASAFLAPVPMHTRT---------QGRMYMADQAPVDEEVRSIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKHGRVAMLAVVGVLVQELYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFEGRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQASIS-DKPILEQTFDNRATTPPLARGGGDPLP 220
            V  + AF++P P  +RT         +G++ M D        +S+ALPFA KP NLNGEL GDVGFDPF F++  D+A+ R  ELKHGRV MLA +GVLVQ  Y+WNE FPSKNFLEA  TAP LG++QL + + A +     F GR+PGD GFDPLRLS +G+RENWQ+ ELKHGRLAMI FL  VVQ  +  D+ I+E T  N A T  L  G G   P
Sbjct:   14 VQASHAFVSP-PGGSRTGLRDPQRPSRGQISMQDIE------KSVALPFARKPDNLNGELVGDVGFDPFGFTNNQDLARMREVELKHGRVCMLATLGVLVQSTYRWNEAFPSKNFLEAPLTAPTLGMIQLLLVISAIEYYNGNFVGRIPGDRGFDPLRLSREGIRENWQLMELKHGRLAMIGFLGMVVQQLLRPDESIVEMTI-NWAKT--LGEGQGITTP 224          
BLAST of EWM28665.1 vs. NCBI_GenBank
Match: gi|299116163|emb|CBN76070.1| (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 186.037 bits (471), Expect = 2.242e-51
Identity = 103/210 (49.05%), Postives = 135/210 (64.29%), Query Frame = 0
Query:    5 ALATIVSTASAFLAPVPMHTRTQGRMYMADQAPVDEEVRSIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKHGRVAMLAVVGVLVQEL-------YQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKF---EGRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQA-SISDKPILEQTFD 203
            ALA     ++AF+ P  +  R   R         D +  SIALPF  +P+NLNGEL GDVGFDP  FS++GD+AK+R AELKHGRVAML VVG + QE        Y      P+KN  +A+  AP L +LQ+ VF+G +D+ ++K+   +GRVPGDIGFDPL+LS DG+ E W +AELKHGRLAM A  A ++Q   + DK  LE T++
Sbjct:    7 ALALGAVGSNAFVTPNAVVGRVASRSARQVSMAADPDA-SIALPFTPRPENLNGELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAIWQEFSVLPGLGYT-----PTKNLFQAVADAPWLAVLQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELTYE 210          
BLAST of EWM28665.1 vs. NCBI_GenBank
Match: gi|298707844|emb|CBJ30250.1| (RNA polymerase 1-4 RNA polymerase I large subunit [Ectocarpus siliculosus])

HSP 1 Score: 176.022 bits (445), Expect = 1.110e-42
Identity = 93/169 (55.03%), Postives = 116/169 (68.64%), Query Frame = 0
Query:  428 IKDFLQEVLSCKTCDRCSAPKT----TNAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQRV-RH 591
            + + L+   S K  D  S   T       VN Y+DSSKD     G  +  PG+RQ LEKKEGLFR HMMGKRVN+ACRSVISPDPY+GT+EIG+PLRFAK LTY QPV  +N   +R+ VE G   +PGAN+VED+ GR++ L R+   +RR +AARLL+ PGQ+V RH
Sbjct:  430 LNESLKNAASLKGKDLASVLTTWVELQTTVNCYMDSSKDPR---GLKDTPPGLRQVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVWRH 595          

HSP 2 Score: 159.073 bits (401), Expect = 4.249e-37
Identity = 80/205 (39.02%), Postives = 115/205 (56.10%), Query Frame = 0
Query:  258 FGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQAL--FRADLHRSTILRD--------TEMRLRRHL------QTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSA 446
            FG   +++I RLSV R+++  T+D L NPLPGGLYDP +GP+D   +C TC    ++CPGHMGH  L++ VY+P+ FG +++ LR KCF CH  RLS     V A+K+ L+DAG A EA  LD  L  +  D  R   + D        +  + R H+        AG     W  G  +  RR L ++ ++ + +CK C+ C A
Sbjct:   17 FGFLTDDDIRRLSVKRITSPVTFDTLNNPLPGGLYDPVLGPVDKMMMCETCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKMMLVDAGRAQEALELDATLLGYLKDGARDHDVLDGNTEDTLVSATKYRDHVLGCLEEDLAGAPRAEWCGGHNRQLRRQLAENLIKAMGACKRCENCGA 221          
BLAST of EWM28665.1 vs. NCBI_GenBank
Match: gi|953498801|emb|CEG39851.1| (dna-directed rna polymerase i subunit rpa1 [Plasmopara halstedii])

HSP 1 Score: 160.999 bits (406), Expect = 1.394e-37
Identity = 80/133 (60.15%), Postives = 98/133 (73.68%), Query Frame = 0
Query:  451 NAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLT 583
            NAVN  +DSSK       G ++  GI+Q +EKKEGLFR HMMGKRVN+A RSVISPDPYIGTS+IG+PLRFAK LTY QPVTP+N  ++R+ V  G + HPGAN+VE   GRLIDL +    +R A++  LLT
Sbjct:  424 NAVNLLVDSSKGK----PGTDVAQGIKQIIEKKEGLFRKHMMGKRVNYAARSVISPDPYIGTSQIGVPLRFAKTLTYPQPVTPWNVKEMRQLVINGPDVHPGANFVESENGRLIDLSKRTPHQREAISKTLLT 552          

HSP 2 Score: 125.561 bits (314), Expect = 4.403e-26
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 0
Query:  258 FGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQALF-----------RADLHRSTILRDTE-MRLRRHLQTAGQVPKSW-IPGETKIKRRALIKDFLQEVLSCKTCDRCSA 446
            FG Y + EI  LSV ++++  ++D L NP+ GGLYDPA+GP+D   IC TC+ + ++CPGH+GH  L + VYNP+ F  +   L+ KCF CH FR+++    V+ +K+ LID G   +A  L + L            R    +  IL + E + L +     G+V     +P   ++ R  L  +FL+       C+ C A
Sbjct:   19 FGFYSDAEIRDLSVKQITSRLSFDSLNNPVVGGLYDPALGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYNPVLFSQLLTLLKRKCFTCHKFRVASACSRVVRVKILLIDNGYEDDAAQLGELLEQRNGVEDEPPQRTFQRQQAILDEYERLALSKSRSDNGKVQLLCPLPRAAEVSREKLATEFLKN--KTGKCENCGA 218          
BLAST of EWM28665.1 vs. NCBI_GenBank
Match: gi|224002505|ref|XP_002290924.1| (DNA directed RNA polymerase i, alpha subunit [Thalassiosira pseudonana CCMP1335] >gi|220972700|gb|EED91031.1| DNA directed RNA polymerase i, alpha subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 159.844 bits (403), Expect = 2.716e-37
Identity = 89/168 (52.98%), Postives = 107/168 (63.69%), Query Frame = 0
Query:  426 ALIKDFLQEVLSCKTCDRCSAP------KTTNAVNGYIDSSKDANARLGGGNLTP-GIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPG 586
            A I +  QE    K  D+  A            VN ++DS++D     G  N  P GIRQ LEKKEG+FR HMMGKRVNFACRSVISPDPYIGT+EIGLPL FAK LT+  PVT  N A++R+ V+RG   +PGA +VE   G+ IDL +M  G R A+AARLL   G
Sbjct:  395 ATIHELTQEEADLKNTDKGQANMLEIWVDLQTTVNCFMDSTRDPK---GTANNAPNGIRQLLEKKEGIFRKHMMGKRVNFACRSVISPDPYIGTNEIGLPLYFAKTLTFPTPVTALNIAEMRKLVQRGPLQYPGAVWVEFPNGQRIDLSKMKEGNRHAIAARLLADNG 559          

HSP 2 Score: 121.324 bits (303), Expect = 1.043e-24
Identity = 73/219 (33.33%), Postives = 104/219 (47.49%), Query Frame = 0
Query:  258 FGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDA-----RSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQAL-------------------FRADLHRSTI-----LRDTEMRLR-RHLQTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSA 446
            FGVY ++E+ + SV  +S++  YD L  PLP GLYDP +GP         + C+TC      CPGH GH  L + VY+PL F  +   +++KC  CH FRLS   C V   KL L+D G   EA  LD+ +                    + ++  S       L D +M LR    Q+A +V  +      +  RR ++K+F Q    C  C  C+A
Sbjct:   18 FGVYTDDEVRQRSVCEISSSVAYDALNTPLPRGLYDPLLGPTAGGGGGASAYCITCGNVQNLCPGHFGHIELCVPVYHPLFFPKLLLFMKMKCLACHHFRLSKRACRVFCTKLHLVDVGRMGEAMGLDEEMAALASKASVGGGDGKMSKQVKQEMMSSAAVLIDELLDQKMALRPPDGQSAEEVTHTM---HERAVRRKILKEFQQACTKCLKCANCNA 233          
BLAST of EWM28665.1 vs. NCBI_GenBank
Match: gi|566007777|gb|ETI30688.1| (hypothetical protein F443_22206 [Phytophthora parasitica P1569] >gi|567945274|gb|ETK71085.1| hypothetical protein L915_21605 [Phytophthora parasitica] >gi|567973879|gb|ETL24531.1| hypothetical protein L916_21474 [Phytophthora parasitica] >gi|568003401|gb|ETL77751.1| hypothetical protein L917_21326 [Phytophthora parasitica] >gi|568033302|gb|ETM31017.1| hypothetical protein L914_21329 [Phytophthora parasitica] >gi|570935225|gb|ETP00482.1| hypothetical protein F441_22110 [Phytophthora parasitica CJ01A1] >gi|570965520|gb|ETP28639.1| hypothetical protein F442_22078 [Phytophthora parasitica P10297] >gi|970651340|gb|KUF90180.1| DNA-directed RNA polymerase [Phytophthora nicotianae])

HSP 1 Score: 159.073 bits (401), Expect = 5.401e-37
Identity = 79/133 (59.40%), Postives = 97/133 (72.93%), Query Frame = 0
Query:  451 NAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLT 583
            NAVN  +DSSK       G ++  GI+Q +EKKEGLFR HMMGKRVN+A RSVISPDPYI TS+IG+PLRFAK LTY QPVTP+N  ++R+ V  G + HPGAN+VE   GRLIDL +    +R A++  LLT
Sbjct:  425 NAVNLLVDSSKAK----PGTDVAQGIKQVIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVTNGPDVHPGANFVESENGRLIDLSKRTPHQREAISKTLLT 553          

HSP 2 Score: 127.872 bits (320), Expect = 7.573e-27
Identity = 56/126 (44.44%), Postives = 84/126 (66.67%), Query Frame = 0
Query:  258 FGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQAL 383
            FG Y + EI  LSV ++++  ++D L NP+ GGLYDPA+GP+D   IC TC+ + ++CPGH+GH  L + VYNP+ FG +   L+ KCF CH FR+++    V+ +K+ L+D G  +EA  L + L
Sbjct:   19 FGFYSDVEIRDLSVKQLTSRLSFDSLNNPVVGGLYDPALGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYNPVLFGQMLNLLKRKCFTCHKFRVASARSRVVRVKILLLDNGFDNEAAQLGELL 144          
BLAST of EWM28665.1 vs. NCBI_GenBank
Match: gi|675213153|ref|XP_008915461.1| (hypothetical protein PPTG_18968 [Phytophthora parasitica INRA-310] >gi|568084303|gb|ETM99238.1| hypothetical protein PPTG_18968 [Phytophthora parasitica INRA-310])

HSP 1 Score: 159.073 bits (401), Expect = 5.450e-37
Identity = 79/133 (59.40%), Postives = 97/133 (72.93%), Query Frame = 0
Query:  451 NAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLT 583
            NAVN  +DSSK       G ++  GI+Q +EKKEGLFR HMMGKRVN+A RSVISPDPYI TS+IG+PLRFAK LTY QPVTP+N  ++R+ V  G + HPGAN+VE   GRLIDL +    +R A++  LLT
Sbjct:  425 NAVNLLVDSSKAK----PGTDVAQGIKQVIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVTNGPDVHPGANFVESENGRLIDLSKRTPHQREAISKTLLT 553          

HSP 2 Score: 127.872 bits (320), Expect = 7.439e-27
Identity = 56/126 (44.44%), Postives = 84/126 (66.67%), Query Frame = 0
Query:  258 FGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLAHEADSLDQAL 383
            FG Y + EI  LSV ++++  ++D L NP+ GGLYDPA+GP+D   IC TC+ + ++CPGH+GH  L + VYNP+ FG +   L+ KCF CH FR+++    V+ +K+ L+D G  +EA  L + L
Sbjct:   19 FGFYSDVEIRDLSVKQLTSRLSFDSLNNPVVGGLYDPALGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYNPVLFGQMLNLLKRKCFTCHKFRVASARSRVVRVKILLLDNGFDNEAAQLGELL 144          
The following BLAST results are available for this feature:
BLAST of EWM28665.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111088|gb|EWM28665.1|0.000e+0100.00dna-directed rna polymerase i subunit [Nannochloro... [more]
gi|553189308|ref|XP_005854974.1|8.644e-13195.57light-harvesting protein [Nannochloropsis gaditana... [more]
gi|553189301|ref|XP_005854973.1|2.433e-12597.99DNA-directed RNA polymerase I subunit RPA1 [Nannoc... [more]
gi|873220484|emb|CEM35487.1|8.046e-6253.39unnamed protein product [Vitrella brassicaformis C... [more]
gi|299116163|emb|CBN76070.1|2.242e-5149.05Light harvesting complex protein [Ectocarpus silic... [more]
gi|298707844|emb|CBJ30250.1|1.110e-4255.03RNA polymerase 1-4 RNA polymerase I large subunit ... [more]
gi|953498801|emb|CEG39851.1|1.394e-3760.15dna-directed rna polymerase i subunit rpa1 [Plasmo... [more]
gi|224002505|ref|XP_002290924.1|2.716e-3752.98DNA directed RNA polymerase i, alpha subunit [Thal... [more]
gi|566007777|gb|ETI30688.1|5.401e-3759.40hypothetical protein F443_22206 [Phytophthora para... [more]
gi|675213153|ref|XP_008915461.1|5.450e-3759.40hypothetical protein PPTG_18968 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2003rna2003Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications