EWM28780.1, cds1976 (CDS) Nannochloropsis gaditana

Overview
NameEWM28780.1
Unique Namecds1976
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:618923..619810 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28780.1
Product16s rrna methyltransferase
Orig transcript idgnl|cribi|Naga_100002g37.4899.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:618923..619810 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008649rRNA methyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR003682rRNA_ssu_MeTfrase_G
Homology
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|585111203|gb|EWM28780.1| (16s rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MKGGDEIALDSTMPSTGRKEAKDTKRKKRKRTKITEQETPEEVSAARDPQKQIPVSRAGFTAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRGPDANAKGRGGNVRR 295
            MKGGDEIALDSTMPSTGRKEAKDTKRKKRKRTKITEQETPEEVSAARDPQKQIPVSRAGFTAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRGPDANAKGRGGNVRR
Sbjct:    1 MKGGDEIALDSTMPSTGRKEAKDTKRKKRKRTKITEQETPEEVSAARDPQKQIPVSRAGFTAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRGPDANAKGRGGNVRR 295          
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|585112533|gb|EWM29945.1| (16s rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 202.216 bits (513), Expect = 9.567e-59
Identity = 114/262 (43.51%), Postives = 155/262 (59.16%), Query Frame = 0
Query:   62 AQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVR-ERFNFVTGRSVTAMPRFVGWVKDKL--------------HAAPSAPLK---GVPDDGILYIKG------------------------GVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRG 281
            A+ K  +P+L P QW+++E L  L+ E N K+NVISRKD++NVL +H+LP +G++ LL KA  GT V+D+GTGGGFPGLPLAI CPQ+   LVD+ GKK+R V  M+ RL L+NV   H R+EEV+ +RF++V GRSVTA+PRF+ W + KL               +    PL+   GVP  G+LY+ G                           +E +EE+L   +P   YP+  L+ G VY GDK V HFS   L +G
Sbjct:  131 AKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGRGREKTGESEEKGPLEDEFGVPVPGVLYVTGLEPTPSTKMARGGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALL-GPVYEGDKHVFHFSAAALVKG 391          
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|1034530626|ref|WP_064500577.1| (MULTISPECIES: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [unclassified Opitutaceae] >gi|1033662318|gb|OAS32486.1| 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Opitutaceae bacterium TAV3] >gi|1033671315|gb|OAS41140.1| 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Opitutaceae bacterium TAV4])

HSP 1 Score: 190.66 bits (483), Expect = 2.002e-56
Identity = 103/214 (48.13%), Postives = 135/214 (63.08%), Query Frame = 0
Query:   68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRG 281
            FPE+TP QW+ L R+ AL +EWN K+N++SRKD+EN+  HH  PC+   KLL   A G  ++DVGTGGGFPGL LA   PQ  F L DS+GKK+ VV D+A RLGL+NV  R+ RVE +   ++FVTGR+VT++P FV  VK ++ A      K  P +GI+Y KGG      EE   G  P     + E + GDVY  DK ++H+   DL R 
Sbjct:    8 FPEVTPAQWDLLIRMSALHREWNAKINLVSRKDIENLEWHHYAPCIAAVKLLRLEA-GATLLDVGTGGGFPGLILAALYPQAHFTLADSVGKKITVVADIARRLGLRNVEARNVRVETLNRSYDFVTGRAVTSLPGFVQLVKPRVRAGA----KHTPANGIVYWKGG--SLADEEAALGLAPARVLSLEETL-GDVYFKDKYIVHYPQPDLGRA 213          
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|759900294|ref|WP_043586737.1| (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Didymococcus colitermitum])

HSP 1 Score: 189.889 bits (481), Expect = 3.960e-56
Identity = 103/214 (48.13%), Postives = 135/214 (63.08%), Query Frame = 0
Query:   68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRG 281
            FPE+TP QW+ L R+ AL +EWN K+N++SRKD+EN+  HH  PC+   KLL   A G  ++DVGTGGGFPGL LA   PQ  F L DS+GKK+ VV D+A RLGL+NV  R+ RVE +   ++FVTGR+VT++P FV  VK ++ A      K  P +GI+Y KGG      EE   G  P     + E + GDVY  DK ++H+   DL R 
Sbjct:    8 FPEVTPAQWDLLIRMSALHREWNAKINLVSRKDIENLEWHHYAPCIAAVKLLRLEA-GATLLDVGTGGGFPGLILAALYPQAHFTLADSVGKKITVVADIARRLGLRNVEARNVRVEILNRSYDFVTGRAVTSLPGFVQLVKPRVRAGA----KHTPANGIVYWKGG--SLADEEAALGLAPARVLSLEETL-GDVYFKDKYIVHYPQPDLGRA 213          
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|503635072|ref|WP_013869148.1| (16S rRNA methyltransferase G [Lacinutrix sp. 5H-3-7-4] >gi|334726230|gb|AEH00368.1| Ribosomal RNA small subunit methyltransferase G [Lacinutrix sp. 5H-3-7-4])

HSP 1 Score: 186.808 bits (473), Expect = 4.179e-55
Identity = 94/203 (46.31%), Postives = 133/203 (65.52%), Query Frame = 0
Query:   68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSV 270
            FP LT  Q ++ E+L  L Q+WN K+NV+SRKD++ +   HVL  + I+K++ +  +G+ +MDVGTGGGFPG+PLAI  P+  F LVDSI KK++VV ++A  LGL+NV+  HTRVEE++E ++F+  R+V AMP FV WVK K+    +  LK    +GILY+KGG  D T+E  L  +  T  Y + +    D Y   K V
Sbjct:    8 FPNLTEDQIDKFEKLSHLYQDWNLKINVVSRKDIDELYMRHVLHSLAIAKVI-EFKDGSDIMDVGTGGGFPGIPLAILFPECNFHLVDSIAKKLKVVNEVAQGLGLENVKTTHTRVEEIKETYDFIVSRAVAAMPTFVHWVKGKIKKEQNHELK----NGILYLKGG--DLTEE--LKDYKTTTIYNLSDFYSEDFYETKKVV 201          
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|939166665|ref|WP_054851953.1| (16S rRNA methyltransferase G [Olleya sp. ITB9])

HSP 1 Score: 185.652 bits (470), Expect = 1.014e-54
Identity = 95/209 (45.45%), Postives = 137/209 (65.55%), Query Frame = 0
Query:   68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQ 276
            FP+LTP+Q E+  +L AL Q+WN K+NV+SRKD++ +   HVL  + I+K++   + G+ +MDVGTGGGFPG+PLAI  P+ +F LVDSI KK+ VV ++   L LQNV+V H+RVEE++E ++F+  R+V AMP FV W+K K+       LK    +GILY+KGG  D T+E  L  +  T  Y I +    D +   K V+H  ++
Sbjct:    8 FPDLTPLQIEQFTKLEALYQDWNLKINVVSRKDIDELYLRHVLHSLAIAKVMDFKS-GSSMMDVGTGGGFPGIPLAILYPECEFHLVDSINKKLNVVREVVTGLELQNVKVTHSRVEEIKETYDFIISRAVAAMPTFVHWIKGKVAKTQQNDLK----NGILYLKGG--DLTEE--LKDYQTTTIYNISDFYEEDFFET-KKVVHLPIK 206          
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|655159958|ref|WP_028606555.1| (16S rRNA methyltransferase G [Olleya sp. VCSM12])

HSP 1 Score: 185.652 bits (470), Expect = 1.025e-54
Identity = 95/209 (45.45%), Postives = 137/209 (65.55%), Query Frame = 0
Query:   68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQ 276
            FP+LTP+Q E+  +L AL Q+WN K+NV+SRKD++ +   HVL  + I+K++   + G+ +MDVGTGGGFPG+PLAI  P+ +F LVDSI KK+ VV ++   L LQNV+V H+RVEE++E ++F+  R+V AMP FV W+K K+       LK    +GILY+KGG  D T+E  L  +  T  Y I +    D +   K V+H  ++
Sbjct:    8 FPDLTPLQIEQFTKLEALYQDWNLKINVVSRKDIDELYLRHVLHSLAIAKVMDFKS-GSSMMDVGTGGGFPGIPLAILYPECEFHLVDSINKKLNVVREVVTGLELQNVKVTHSRVEEIKETYDFIISRAVAAMPTFVHWIKGKVAKTQQNDLK----NGILYLKGG--DLTEE--LKDYQTTTIYNISDFYEEDFFET-KKVVHLPIK 206          
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|654831582|ref|WP_028284315.1| (16S rRNA methyltransferase G [Olleya marilimosa])

HSP 1 Score: 185.652 bits (470), Expect = 1.130e-54
Identity = 93/209 (44.50%), Postives = 137/209 (65.55%), Query Frame = 0
Query:   68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQ 276
            FP+LTP+Q E+  +L A  Q+WN K+NV+SRKD++ +   HVL  + I+K+++   EG+ +MDVGTGGGFPG+PLAI  P+ +F LVDSI KK+ VV ++   L LQNV+V H+RVEE++E ++F+  R+V AMP FV W+K K+       LK    +GI+Y+KGG  D T+E  L  +  T  Y I +    D +   K ++H  ++
Sbjct:    8 FPDLTPLQIEQFTKLEAFYQDWNLKINVVSRKDIDELYLRHVLHSLAIAKIIN-FKEGSSMMDVGTGGGFPGIPLAILFPECEFHLVDSINKKLNVVREVVAGLELQNVKVTHSRVEEIKETYDFIISRAVAAMPTFVHWIKGKVSKTQQNQLK----NGIIYLKGG--DLTEE--LQDYKTTTIYNISDYFEEDFFDT-KKIVHLPIK 206          
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|1011035555|ref|WP_061991698.1| (16S rRNA methyltransferase G [Flammeovirgaceae bacterium 311] >gi|595619730|gb|AHM63373.1| methyltransferase GidB [Flammeovirgaceae bacterium 311])

HSP 1 Score: 185.267 bits (469), Expect = 1.481e-54
Identity = 91/187 (48.66%), Postives = 123/187 (65.78%), Query Frame = 0
Query:   61 TAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGW 247
             A  K  FP++TP Q E+  RLGAL +EWN ++NV+SRKD+E +  HHVL  +GI+++      G +++DVGTGGGFPG+PLAI  P   F+LVDSIGKK+ VV ++A  LGLQNVR    R E+V+  F+FV  R+VT M  F+GWV+ K+      PL     +GILY+KGG  +E  +E    W
Sbjct:    5 VALIKKYFPDITPEQGEQFGRLGALYEEWNSRINVVSRKDIEQLYMHHVLHSLGIARV-QPFDSGAQILDVGTGGGFPGIPLAIMYPHASFYLVDSIGKKITVVKEVAQALGLQNVRAEQLRAEQVKGHFDFVVSRAVTRMKPFIGWVEQKIRPDSKHPLY----NGILYLKGGELEEEMKETGLNW 186          
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|928965703|ref|WP_053990221.1| (16S rRNA methyltransferase G [Mangrovimonas sp. TPBH4])

HSP 1 Score: 184.882 bits (468), Expect = 1.822e-54
Identity = 93/206 (45.15%), Postives = 131/206 (63.59%), Query Frame = 0
Query:   65 KARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSV 270
            K  FP+LT  Q E+ E+L +L Q+WN K+NV+SRKD++ +   HVL  +GI+K++ +   G  V+DVGTGGGFPG+PLAI  P+ KF LVDSI KK++VV ++   LG+ NV+  H+RVEE+ E+F+F+  R+V  MP FV WVK K+  A +  LK    +GILY+KGG       E+L  +     Y + E    D +   K V
Sbjct:    5 KYYFPDLTKQQLEQFEKLESLYQDWNLKINVVSRKDIDELYLRHVLHSLGIAKVM-QYQPGANVLDVGTGGGFPGIPLAIMFPETKFHLVDSIAKKLKVVNEVVEGLGITNVKTTHSRVEEIDEQFDFIVSRAVAIMPTFVHWVKGKIAKAQNHELK----NGILYLKGG----DLSEELESYKTATIYNLSEFYKEDFFETKKVV 201          
The following BLAST results are available for this feature:
BLAST of EWM28780.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111203|gb|EWM28780.1|0.000e+0100.0016s rrna methyltransferase [Nannochloropsis gadita... [more]
gi|585112533|gb|EWM29945.1|9.567e-5943.5116s rrna methyltransferase [Nannochloropsis gadita... [more]
gi|1034530626|ref|WP_064500577.1|2.002e-5648.13MULTISPECIES: 16S rRNA (guanine(527)-N(7))-methylt... [more]
gi|759900294|ref|WP_043586737.1|3.960e-5648.1316S rRNA (guanine(527)-N(7))-methyltransferase Rsm... [more]
gi|503635072|ref|WP_013869148.1|4.179e-5546.3116S rRNA methyltransferase G [Lacinutrix sp. 5H-3-... [more]
gi|939166665|ref|WP_054851953.1|1.014e-5445.4516S rRNA methyltransferase G [Olleya sp. ITB9][more]
gi|655159958|ref|WP_028606555.1|1.025e-5445.4516S rRNA methyltransferase G [Olleya sp. VCSM12][more]
gi|654831582|ref|WP_028284315.1|1.130e-5444.5016S rRNA methyltransferase G [Olleya marilimosa][more]
gi|1011035555|ref|WP_061991698.1|1.481e-5448.6616S rRNA methyltransferase G [Flammeovirgaceae bac... [more]
gi|928965703|ref|WP_053990221.1|1.822e-5445.1516S rRNA methyltransferase G [Mangrovimonas sp. TP... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1981rna1981Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications