EWM28780.1, cds1976 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|585111203|gb|EWM28780.1| (16s rrna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query: 1 MKGGDEIALDSTMPSTGRKEAKDTKRKKRKRTKITEQETPEEVSAARDPQKQIPVSRAGFTAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRGPDANAKGRGGNVRR 295
MKGGDEIALDSTMPSTGRKEAKDTKRKKRKRTKITEQETPEEVSAARDPQKQIPVSRAGFTAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRGPDANAKGRGGNVRR
Sbjct: 1 MKGGDEIALDSTMPSTGRKEAKDTKRKKRKRTKITEQETPEEVSAARDPQKQIPVSRAGFTAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRGPDANAKGRGGNVRR 295
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|585112533|gb|EWM29945.1| (16s rrna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 202.216 bits (513), Expect = 9.567e-59 Identity = 114/262 (43.51%), Postives = 155/262 (59.16%), Query Frame = 0
Query: 62 AQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVR-ERFNFVTGRSVTAMPRFVGWVKDKL--------------HAAPSAPLK---GVPDDGILYIKG------------------------GVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRG 281
A+ K +P+L P QW+++E L L+ E N K+NVISRKD++NVL +H+LP +G++ LL KA GT V+D+GTGGGFPGLPLAI CPQ+ LVD+ GKK+R V M+ RL L+NV H R+EEV+ +RF++V GRSVTA+PRF+ W + KL + PL+ GVP G+LY+ G +E +EE+L +P YP+ L+ G VY GDK V HFS L +G
Sbjct: 131 AKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGRGREKTGESEEKGPLEDEFGVPVPGVLYVTGLEPTPSTKMARGGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALL-GPVYEGDKHVFHFSAAALVKG 391
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|1034530626|ref|WP_064500577.1| (MULTISPECIES: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [unclassified Opitutaceae] >gi|1033662318|gb|OAS32486.1| 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Opitutaceae bacterium TAV3] >gi|1033671315|gb|OAS41140.1| 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Opitutaceae bacterium TAV4]) HSP 1 Score: 190.66 bits (483), Expect = 2.002e-56 Identity = 103/214 (48.13%), Postives = 135/214 (63.08%), Query Frame = 0
Query: 68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRG 281
FPE+TP QW+ L R+ AL +EWN K+N++SRKD+EN+ HH PC+ KLL A G ++DVGTGGGFPGL LA PQ F L DS+GKK+ VV D+A RLGL+NV R+ RVE + ++FVTGR+VT++P FV VK ++ A K P +GI+Y KGG EE G P + E + GDVY DK ++H+ DL R
Sbjct: 8 FPEVTPAQWDLLIRMSALHREWNAKINLVSRKDIENLEWHHYAPCIAAVKLLRLEA-GATLLDVGTGGGFPGLILAALYPQAHFTLADSVGKKITVVADIARRLGLRNVEARNVRVETLNRSYDFVTGRAVTSLPGFVQLVKPRVRAGA----KHTPANGIVYWKGG--SLADEEAALGLAPARVLSLEETL-GDVYFKDKYIVHYPQPDLGRA 213
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|759900294|ref|WP_043586737.1| (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Didymococcus colitermitum]) HSP 1 Score: 189.889 bits (481), Expect = 3.960e-56 Identity = 103/214 (48.13%), Postives = 135/214 (63.08%), Query Frame = 0
Query: 68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRG 281
FPE+TP QW+ L R+ AL +EWN K+N++SRKD+EN+ HH PC+ KLL A G ++DVGTGGGFPGL LA PQ F L DS+GKK+ VV D+A RLGL+NV R+ RVE + ++FVTGR+VT++P FV VK ++ A K P +GI+Y KGG EE G P + E + GDVY DK ++H+ DL R
Sbjct: 8 FPEVTPAQWDLLIRMSALHREWNAKINLVSRKDIENLEWHHYAPCIAAVKLLRLEA-GATLLDVGTGGGFPGLILAALYPQAHFTLADSVGKKITVVADIARRLGLRNVEARNVRVEILNRSYDFVTGRAVTSLPGFVQLVKPRVRAGA----KHTPANGIVYWKGG--SLADEEAALGLAPARVLSLEETL-GDVYFKDKYIVHYPQPDLGRA 213
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|503635072|ref|WP_013869148.1| (16S rRNA methyltransferase G [Lacinutrix sp. 5H-3-7-4] >gi|334726230|gb|AEH00368.1| Ribosomal RNA small subunit methyltransferase G [Lacinutrix sp. 5H-3-7-4]) HSP 1 Score: 186.808 bits (473), Expect = 4.179e-55 Identity = 94/203 (46.31%), Postives = 133/203 (65.52%), Query Frame = 0
Query: 68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSV 270
FP LT Q ++ E+L L Q+WN K+NV+SRKD++ + HVL + I+K++ + +G+ +MDVGTGGGFPG+PLAI P+ F LVDSI KK++VV ++A LGL+NV+ HTRVEE++E ++F+ R+V AMP FV WVK K+ + LK +GILY+KGG D T+E L + T Y + + D Y K V
Sbjct: 8 FPNLTEDQIDKFEKLSHLYQDWNLKINVVSRKDIDELYMRHVLHSLAIAKVI-EFKDGSDIMDVGTGGGFPGIPLAILFPECNFHLVDSIAKKLKVVNEVAQGLGLENVKTTHTRVEEIKETYDFIVSRAVAAMPTFVHWVKGKIKKEQNHELK----NGILYLKGG--DLTEE--LKDYKTTTIYNLSDFYSEDFYETKKVV 201
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|939166665|ref|WP_054851953.1| (16S rRNA methyltransferase G [Olleya sp. ITB9]) HSP 1 Score: 185.652 bits (470), Expect = 1.014e-54 Identity = 95/209 (45.45%), Postives = 137/209 (65.55%), Query Frame = 0
Query: 68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQ 276
FP+LTP+Q E+ +L AL Q+WN K+NV+SRKD++ + HVL + I+K++ + G+ +MDVGTGGGFPG+PLAI P+ +F LVDSI KK+ VV ++ L LQNV+V H+RVEE++E ++F+ R+V AMP FV W+K K+ LK +GILY+KGG D T+E L + T Y I + D + K V+H ++
Sbjct: 8 FPDLTPLQIEQFTKLEALYQDWNLKINVVSRKDIDELYLRHVLHSLAIAKVMDFKS-GSSMMDVGTGGGFPGIPLAILYPECEFHLVDSINKKLNVVREVVTGLELQNVKVTHSRVEEIKETYDFIISRAVAAMPTFVHWIKGKVAKTQQNDLK----NGILYLKGG--DLTEE--LKDYQTTTIYNISDFYEEDFFET-KKVVHLPIK 206
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|655159958|ref|WP_028606555.1| (16S rRNA methyltransferase G [Olleya sp. VCSM12]) HSP 1 Score: 185.652 bits (470), Expect = 1.025e-54 Identity = 95/209 (45.45%), Postives = 137/209 (65.55%), Query Frame = 0
Query: 68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQ 276
FP+LTP+Q E+ +L AL Q+WN K+NV+SRKD++ + HVL + I+K++ + G+ +MDVGTGGGFPG+PLAI P+ +F LVDSI KK+ VV ++ L LQNV+V H+RVEE++E ++F+ R+V AMP FV W+K K+ LK +GILY+KGG D T+E L + T Y I + D + K V+H ++
Sbjct: 8 FPDLTPLQIEQFTKLEALYQDWNLKINVVSRKDIDELYLRHVLHSLAIAKVMDFKS-GSSMMDVGTGGGFPGIPLAILYPECEFHLVDSINKKLNVVREVVTGLELQNVKVTHSRVEEIKETYDFIISRAVAAMPTFVHWIKGKVAKTQQNDLK----NGILYLKGG--DLTEE--LKDYQTTTIYNISDFYEEDFFET-KKVVHLPIK 206
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|654831582|ref|WP_028284315.1| (16S rRNA methyltransferase G [Olleya marilimosa]) HSP 1 Score: 185.652 bits (470), Expect = 1.130e-54 Identity = 93/209 (44.50%), Postives = 137/209 (65.55%), Query Frame = 0
Query: 68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQ 276
FP+LTP+Q E+ +L A Q+WN K+NV+SRKD++ + HVL + I+K+++ EG+ +MDVGTGGGFPG+PLAI P+ +F LVDSI KK+ VV ++ L LQNV+V H+RVEE++E ++F+ R+V AMP FV W+K K+ LK +GI+Y+KGG D T+E L + T Y I + D + K ++H ++
Sbjct: 8 FPDLTPLQIEQFTKLEAFYQDWNLKINVVSRKDIDELYLRHVLHSLAIAKIIN-FKEGSSMMDVGTGGGFPGIPLAILFPECEFHLVDSINKKLNVVREVVAGLELQNVKVTHSRVEEIKETYDFIISRAVAAMPTFVHWIKGKVSKTQQNQLK----NGIIYLKGG--DLTEE--LQDYKTTTIYNISDYFEEDFFDT-KKIVHLPIK 206
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|1011035555|ref|WP_061991698.1| (16S rRNA methyltransferase G [Flammeovirgaceae bacterium 311] >gi|595619730|gb|AHM63373.1| methyltransferase GidB [Flammeovirgaceae bacterium 311]) HSP 1 Score: 185.267 bits (469), Expect = 1.481e-54 Identity = 91/187 (48.66%), Postives = 123/187 (65.78%), Query Frame = 0
Query: 61 TAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGW 247
A K FP++TP Q E+ RLGAL +EWN ++NV+SRKD+E + HHVL +GI+++ G +++DVGTGGGFPG+PLAI P F+LVDSIGKK+ VV ++A LGLQNVR R E+V+ F+FV R+VT M F+GWV+ K+ PL +GILY+KGG +E +E W
Sbjct: 5 VALIKKYFPDITPEQGEQFGRLGALYEEWNSRINVVSRKDIEQLYMHHVLHSLGIARV-QPFDSGAQILDVGTGGGFPGIPLAIMYPHASFYLVDSIGKKITVVKEVAQALGLQNVRAEQLRAEQVKGHFDFVVSRAVTRMKPFIGWVEQKIRPDSKHPLY----NGILYLKGGELEEEMKETGLNW 186
BLAST of EWM28780.1 vs. NCBI_GenBank
Match: gi|928965703|ref|WP_053990221.1| (16S rRNA methyltransferase G [Mangrovimonas sp. TPBH4]) HSP 1 Score: 184.882 bits (468), Expect = 1.822e-54 Identity = 93/206 (45.15%), Postives = 131/206 (63.59%), Query Frame = 0
Query: 65 KARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDDGILYIKGGVSDETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSV 270
K FP+LT Q E+ E+L +L Q+WN K+NV+SRKD++ + HVL +GI+K++ + G V+DVGTGGGFPG+PLAI P+ KF LVDSI KK++VV ++ LG+ NV+ H+RVEE+ E+F+F+ R+V MP FV WVK K+ A + LK +GILY+KGG E+L + Y + E D + K V
Sbjct: 5 KYYFPDLTKQQLEQFEKLESLYQDWNLKINVVSRKDIDELYLRHVLHSLGIAKVM-QYQPGANVLDVGTGGGFPGIPLAIMFPETKFHLVDSIAKKLKVVNEVVEGLGITNVKTTHSRVEEIDEQFDFIVSRAVAIMPTFVHWVKGKIAKAQNHELK----NGILYLKGG----DLSEELESYKTATIYNLSEFYKEDFFETKKVV 201 The following BLAST results are available for this feature:
BLAST of EWM28780.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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