EWM28797.1, cds1944 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|585111220|gb|EWM28797.1| (erg28 like protein [Nannochloropsis gaditana]) HSP 1 Score: 329.331 bits (843), Expect = 4.034e-114 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query: 1 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIASKLKSCASSIFDFPICVQESAYLSFTSGLNTTATSTLVMAIAYSSIVVEDTKKSK 165
MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIASKLKSCASSIFDFPICVQESAYLSFTSGLNTTATSTLVMAIAYSSIVVEDTKKSK
Sbjct: 1 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIASKLKSCASSIFDFPICVQESAYLSFTSGLNTTATSTLVMAIAYSSIVVEDTKKSK 165
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|553194054|ref|XP_005855885.1| (erg28 like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293178|gb|EKU20478.1| erg28 like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 218.394 bits (555), Expect = 7.292e-71 Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0
Query: 1 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIA 110
MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLE EMYRTVDMRSAMTPFIIA
Sbjct: 13 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEVEMYRTVDMRSAMTPFIIA 122
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|302840810|ref|XP_002951951.1| (hypothetical protein VOLCADRAFT_105276 [Volvox carteri f. nagariensis] >gi|300262852|gb|EFJ47056.1| hypothetical protein VOLCADRAFT_105276 [Volvox carteri f. nagariensis]) HSP 1 Score: 91.2781 bits (225), Expect = 1.523e-20 Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 0
Query: 5 LRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIASKLKSCASSIFDF 123
L+ WL+ VA LR+L+V++G F P L VF R V+ L R F WTL++ + L CA++ + +Y TT+ SFV+A++FF E +Y+TV +R A++P IIAS + S +DF
Sbjct: 20 LKRWLVVVASLRMLAVVIGIFAPNKLKSQVFDRKPELVSNLLGRLFAAWTLMTCALCLACAMDPSNKTVYGTTLFSFVVALLFFLSELLVYKTVTIRGALSPMIIASISTAWLSLGWDF 138
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|159470603|ref|XP_001693446.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158282949|gb|EDP08700.1| predicted protein [Chlamydomonas reinhardtii]) HSP 1 Score: 89.3521 bits (220), Expect = 6.950e-20 Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 0
Query: 5 LRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
L+ WL+ VA LR+L+V++G F P L VF R VTPL R F TWTL++ + L CA + + +Y TT+ SF +A+ FF E +++T+ +R A++P I+AS
Sbjct: 8 LQRWLVLVAGLRMLAVVIGIFAPNKLKSQVFDRRPELVTPLLGRLFATWTLMTCALCLACARDPSNKTVYLTTLFSFAVALAFFLGELLIFKTLSIRGAISPMIVAS 114
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|760437941|ref|XP_011396039.1| (putative ergosterol biosynthetic protein 28 [Auxenochlorella protothecoides] >gi|675350729|gb|KFM23169.1| putative ergosterol biosynthetic protein 28 [Auxenochlorella protothecoides]) HSP 1 Score: 88.9669 bits (219), Expect = 1.713e-19 Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 0
Query: 3 TLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
T LR WL+ VA LR+L+V++G+ P L +++ R V L RTF WTL SSV+ L+CA N +Y T+ASF IA++ F LE ++ T+D R A+ P I+A+
Sbjct: 5 TALRRWLVFVALLRLLAVVIGFGSPDKLRTNLYNRKPFLVNDLQGRTFAVWTLTSSVLCLICARNPCVPSIYGATLASFAIALLHFLLELTVFGTLDWRGALQPGIVAT 113
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|552847464|ref|XP_005851866.1| (hypothetical protein CHLNCDRAFT_59539 [Chlorella variabilis] >gi|307111530|gb|EFN59764.1| hypothetical protein CHLNCDRAFT_59539 [Chlorella variabilis]) HSP 1 Score: 79.7221 bits (195), Expect = 6.108e-16 Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 0
Query: 3 TLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
T LR WL+ VA LR+ SV LGY P +++ + VT L R F TWTL SS++ L+CA N +Y T+ SF+IA++ F +E +++T+ ++ A+ P +A
Sbjct: 5 TALRRWLVFVALLRLFSVGLGYAAPHRFQTNLYTKQPEGVTDLAGRIFSTWTLTSSMLCLICARNPCVPAIYGATLGSFLIALLHFVMELVLFQTMSLKFALQPMAVAG 113
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|957852527|ref|XP_014676333.1| (PREDICTED: probable ergosterol biosynthetic protein 28 [Priapulus caudatus] >gi|957852530|ref|XP_014676334.1| PREDICTED: probable ergosterol biosynthetic protein 28 [Priapulus caudatus] >gi|957852533|ref|XP_014676335.1| PREDICTED: probable ergosterol biosynthetic protein 28 [Priapulus caudatus]) HSP 1 Score: 79.337 bits (194), Expect = 8.650e-16 Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 0
Query: 5 LRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAM-TPFIIAS 111
LR W+ VA + + + I ++ LGE+++ SQVTPL AR FGTWT L+++V + CA +I + PLY T+ SF+IA V F LE Y++ + + TP +++
Sbjct: 11 LRGWIGVVALMGIGNTIQCFYNHVFLGENLYMEGPSQVTPLMARLFGTWTFLAAIVRIYCAYDITNRPLYDITLISFLIAFVHFTLEAFYYQSTGLHVGLATPLLVSG 118
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|950971220|ref|XP_014500262.1| (PREDICTED: ergosterol biosynthetic protein 28 [Vigna radiata var. radiata]) HSP 1 Score: 77.0258 bits (188), Expect = 3.406e-15 Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 0
Query: 5 LRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
L WLI+V LR+ SV G+F L +VF + +T + RTFGTWTLL+ + +CA N+E+ PLY T SF+ A+ F E+ +YRT+++++ T I A
Sbjct: 4 LGWWLIAVGTLRLASVWFGFFDIWALRLAVFSN--TTMTEVHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYALGHFLTEYLIYRTMEIKNLTTVGIFAG 108
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|1044568987|ref|XP_017420925.1| (PREDICTED: ergosterol biosynthetic protein 28 [Vigna angularis] >gi|920698627|gb|KOM41852.1| hypothetical protein LR48_Vigan04g205000 [Vigna angularis] >gi|965662675|dbj|BAT78384.1| hypothetical protein VIGAN_02105400 [Vigna angularis var. angularis]) HSP 1 Score: 77.0258 bits (188), Expect = 4.357e-15 Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 0
Query: 5 LRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
L WLI+V LR+ SV G+F L +VF + +T + RTFGTWTLL+ + +CA N+E+ PLY T SF+ A+ F E+ +YRT+++++ T I A
Sbjct: 4 LGWWLIAVGTLRLASVWFGFFDIWALRLAVFSN--TTMTEVHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYALGHFLTEYLIYRTMEIKNLTTVGIFAG 108
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|1109258556|ref|XP_019153279.1| (PREDICTED: ergosterol biosynthetic protein 28 [Ipomoea nil]) HSP 1 Score: 76.6406 bits (187), Expect = 4.747e-15 Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 4 LLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
LL WL+ V LR+ SV G+F L +VF +A +T + RTFG WTLL+ + +CA N+++ PLY T SF+ A+ F EF +Y T+++R+ MT + A
Sbjct: 3 LLGWWLMLVGTLRLASVWFGFFDIWALRLAVFSKA--TMTEVHGRTFGVWTLLTCTLCYLCAFNLDNKPLYLATFLSFIYALGHFLSEFLIYHTMEIRNLMTVGVFAG 108 The following BLAST results are available for this feature:
BLAST of EWM28797.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|