EWM28797.1, cds1944 (CDS) Nannochloropsis gaditana

Overview
NameEWM28797.1
Unique Namecds1944
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:559351..559848 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28797.1
Producterg28 like protein
Orig transcript idgnl|cribi|Naga_100002g69.4916.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:559351..559848 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0009579thylakoid
GO:0009522photosystem I
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR001280PSI_PsaA/B
IPR005352Erg28
Homology
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|585111220|gb|EWM28797.1| (erg28 like protein [Nannochloropsis gaditana])

HSP 1 Score: 329.331 bits (843), Expect = 4.034e-114
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIASKLKSCASSIFDFPICVQESAYLSFTSGLNTTATSTLVMAIAYSSIVVEDTKKSK 165
            MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIASKLKSCASSIFDFPICVQESAYLSFTSGLNTTATSTLVMAIAYSSIVVEDTKKSK
Sbjct:    1 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIASKLKSCASSIFDFPICVQESAYLSFTSGLNTTATSTLVMAIAYSSIVVEDTKKSK 165          
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|553194054|ref|XP_005855885.1| (erg28 like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293178|gb|EKU20478.1| erg28 like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 218.394 bits (555), Expect = 7.292e-71
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0
Query:    1 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIA 110
            MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLE EMYRTVDMRSAMTPFIIA
Sbjct:   13 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEVEMYRTVDMRSAMTPFIIA 122          
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|302840810|ref|XP_002951951.1| (hypothetical protein VOLCADRAFT_105276 [Volvox carteri f. nagariensis] >gi|300262852|gb|EFJ47056.1| hypothetical protein VOLCADRAFT_105276 [Volvox carteri f. nagariensis])

HSP 1 Score: 91.2781 bits (225), Expect = 1.523e-20
Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 0
Query:    5 LRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIASKLKSCASSIFDF 123
            L+ WL+ VA LR+L+V++G F P  L   VF R    V+ L  R F  WTL++  + L CA++  +  +Y TT+ SFV+A++FF  E  +Y+TV +R A++P IIAS   +  S  +DF
Sbjct:   20 LKRWLVVVASLRMLAVVIGIFAPNKLKSQVFDRKPELVSNLLGRLFAAWTLMTCALCLACAMDPSNKTVYGTTLFSFVVALLFFLSELLVYKTVTIRGALSPMIIASISTAWLSLGWDF 138          
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|159470603|ref|XP_001693446.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158282949|gb|EDP08700.1| predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 89.3521 bits (220), Expect = 6.950e-20
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 0
Query:    5 LRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
            L+ WL+ VA LR+L+V++G F P  L   VF R    VTPL  R F TWTL++  + L CA +  +  +Y TT+ SF +A+ FF  E  +++T+ +R A++P I+AS
Sbjct:    8 LQRWLVLVAGLRMLAVVIGIFAPNKLKSQVFDRRPELVTPLLGRLFATWTLMTCALCLACARDPSNKTVYLTTLFSFAVALAFFLGELLIFKTLSIRGAISPMIVAS 114          
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|760437941|ref|XP_011396039.1| (putative ergosterol biosynthetic protein 28 [Auxenochlorella protothecoides] >gi|675350729|gb|KFM23169.1| putative ergosterol biosynthetic protein 28 [Auxenochlorella protothecoides])

HSP 1 Score: 88.9669 bits (219), Expect = 1.713e-19
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 0
Query:    3 TLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
            T LR WL+ VA LR+L+V++G+  P  L  +++ R    V  L  RTF  WTL SSV+ L+CA N     +Y  T+ASF IA++ F LE  ++ T+D R A+ P I+A+
Sbjct:    5 TALRRWLVFVALLRLLAVVIGFGSPDKLRTNLYNRKPFLVNDLQGRTFAVWTLTSSVLCLICARNPCVPSIYGATLASFAIALLHFLLELTVFGTLDWRGALQPGIVAT 113          
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|552847464|ref|XP_005851866.1| (hypothetical protein CHLNCDRAFT_59539 [Chlorella variabilis] >gi|307111530|gb|EFN59764.1| hypothetical protein CHLNCDRAFT_59539 [Chlorella variabilis])

HSP 1 Score: 79.7221 bits (195), Expect = 6.108e-16
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 0
Query:    3 TLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
            T LR WL+ VA LR+ SV LGY  P     +++ +    VT L  R F TWTL SS++ L+CA N     +Y  T+ SF+IA++ F +E  +++T+ ++ A+ P  +A 
Sbjct:    5 TALRRWLVFVALLRLFSVGLGYAAPHRFQTNLYTKQPEGVTDLAGRIFSTWTLTSSMLCLICARNPCVPAIYGATLGSFLIALLHFVMELVLFQTMSLKFALQPMAVAG 113          
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|957852527|ref|XP_014676333.1| (PREDICTED: probable ergosterol biosynthetic protein 28 [Priapulus caudatus] >gi|957852530|ref|XP_014676334.1| PREDICTED: probable ergosterol biosynthetic protein 28 [Priapulus caudatus] >gi|957852533|ref|XP_014676335.1| PREDICTED: probable ergosterol biosynthetic protein 28 [Priapulus caudatus])

HSP 1 Score: 79.337 bits (194), Expect = 8.650e-16
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 0
Query:    5 LRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAM-TPFIIAS 111
            LR W+  VA + + + I  ++    LGE+++    SQVTPL AR FGTWT L+++V + CA +I + PLY  T+ SF+IA V F LE   Y++  +   + TP +++ 
Sbjct:   11 LRGWIGVVALMGIGNTIQCFYNHVFLGENLYMEGPSQVTPLMARLFGTWTFLAAIVRIYCAYDITNRPLYDITLISFLIAFVHFTLEAFYYQSTGLHVGLATPLLVSG 118          
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|950971220|ref|XP_014500262.1| (PREDICTED: ergosterol biosynthetic protein 28 [Vigna radiata var. radiata])

HSP 1 Score: 77.0258 bits (188), Expect = 3.406e-15
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 0
Query:    5 LRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
            L  WLI+V  LR+ SV  G+F    L  +VF    + +T +  RTFGTWTLL+  +  +CA N+E+ PLY  T  SF+ A+  F  E+ +YRT+++++  T  I A 
Sbjct:    4 LGWWLIAVGTLRLASVWFGFFDIWALRLAVFSN--TTMTEVHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYALGHFLTEYLIYRTMEIKNLTTVGIFAG 108          
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|1044568987|ref|XP_017420925.1| (PREDICTED: ergosterol biosynthetic protein 28 [Vigna angularis] >gi|920698627|gb|KOM41852.1| hypothetical protein LR48_Vigan04g205000 [Vigna angularis] >gi|965662675|dbj|BAT78384.1| hypothetical protein VIGAN_02105400 [Vigna angularis var. angularis])

HSP 1 Score: 77.0258 bits (188), Expect = 4.357e-15
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 0
Query:    5 LRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
            L  WLI+V  LR+ SV  G+F    L  +VF    + +T +  RTFGTWTLL+  +  +CA N+E+ PLY  T  SF+ A+  F  E+ +YRT+++++  T  I A 
Sbjct:    4 LGWWLIAVGTLRLASVWFGFFDIWALRLAVFSN--TTMTEVHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYALGHFLTEYLIYRTMEIKNLTTVGIFAG 108          
BLAST of EWM28797.1 vs. NCBI_GenBank
Match: gi|1109258556|ref|XP_019153279.1| (PREDICTED: ergosterol biosynthetic protein 28 [Ipomoea nil])

HSP 1 Score: 76.6406 bits (187), Expect = 4.747e-15
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 0
Query:    4 LLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIAS 111
            LL  WL+ V  LR+ SV  G+F    L  +VF +A   +T +  RTFG WTLL+  +  +CA N+++ PLY  T  SF+ A+  F  EF +Y T+++R+ MT  + A 
Sbjct:    3 LLGWWLMLVGTLRLASVWFGFFDIWALRLAVFSKA--TMTEVHGRTFGVWTLLTCTLCYLCAFNLDNKPLYLATFLSFIYALGHFLSEFLIYHTMEIRNLMTVGVFAG 108          
The following BLAST results are available for this feature:
BLAST of EWM28797.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111220|gb|EWM28797.1|4.034e-114100.00erg28 like protein [Nannochloropsis gaditana][more]
gi|553194054|ref|XP_005855885.1|7.292e-7199.09erg28 like protein, partial [Nannochloropsis gadit... [more]
gi|302840810|ref|XP_002951951.1|1.523e-2041.18hypothetical protein VOLCADRAFT_105276 [Volvox car... [more]
gi|159470603|ref|XP_001693446.1|6.950e-2042.06predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|760437941|ref|XP_011396039.1|1.713e-1943.12putative ergosterol biosynthetic protein 28 [Auxen... [more]
gi|552847464|ref|XP_005851866.1|6.108e-1638.53hypothetical protein CHLNCDRAFT_59539 [Chlorella v... [more]
gi|957852527|ref|XP_014676333.1|8.650e-1638.89PREDICTED: probable ergosterol biosynthetic protei... [more]
gi|950971220|ref|XP_014500262.1|3.406e-1540.19PREDICTED: ergosterol biosynthetic protein 28 [Vig... [more]
gi|1044568987|ref|XP_017420925.1|4.357e-1540.19PREDICTED: ergosterol biosynthetic protein 28 [Vig... [more]
gi|1109258556|ref|XP_019153279.1|4.747e-1539.81PREDICTED: ergosterol biosynthetic protein 28 [Ipo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1949rna1949Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications