EWM28824.1, cds1941 (CDS) Nannochloropsis gaditana

Overview
NameEWM28824.1
Unique Namecds1941
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:536815..537319 -
Alignment locationCM002458.1:535739..536637 -
Alignment locationCM002458.1:535246..535637 -
Alignment locationCM002458.1:534366..535137 -

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Properties
Property NameValue
Protein idEWM28824.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g73.4943.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:536815..537319 -
CM002458.1supercontigCM002458.1:535739..536637 -
CM002458.1supercontigCM002458.1:535246..535637 -
CM002458.1supercontigCM002458.1:534366..535137 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28824.1 vs. NCBI_GenBank
Match: gi|585111247|gb|EWM28824.1| (hypothetical protein Naga_100002g73 [Nannochloropsis gaditana])

HSP 1 Score: 1763.81 bits (4567), Expect = 0.000e+0
Identity = 855/855 (100.00%), Postives = 855/855 (100.00%), Query Frame = 0
Query:    1 MEQLFKRYHNVSYTIPVLNVTITTSDITEYARIHSLNIGPIVALLFMGSIMTLVWFYLLVCVCCCLSRRGEASRGTSQVVPGAAYSSPTSPSSSASPLACKIELPSSSIERYDDEQRGNESKNMHRSRSLEEEHRKYSFKSLYIASIILSALLGLAVVSIVIYQSKIDASARILMGDVENLVLDSANALCTSDASSRFCTPQSAGDFVRTAETRASGMLTNLVDLLQSLGEELYPPLNGMIDDLDMAEADLEDIKVYISLIMGNRSRIQEYNDWLFATSPDDEVTPLTAALPKGKLPNVTAEQLTKLDDHQSVIIMTRNTSEDVFGKIQNFMQTDVPDAVTRFNTSAPPGTSTQLLMKPLQNVFEKLLRARSLMLRYYALVYEQGERIEDYLAPKTLAVSVIFLLPFVLQIVFTILNRSNQKCSGHLLTNMCCSYLCSVVFLLLAIIFSLLAVVSGTVCEYHLTLLAKVPVQNVTINDVQLSFTPAVIEDILNCPSYPTAPAGATSGNNFISLLGGEKIFDITSQTDEIIAQVEEARTSFTLNAQIQQSIYQLSILENFTALDFANSSEILSYRLEIDALLEDLPPATMDRDDEVQRASLTAYYLTNGSFSWDSYQESLEEINAILAEAAPIPDGFFSSYTFQTVWNFTQATVEADSAWMDVTFVRPKNYEALIAGLVQMDPFTGAVNTAAKTNIQVHANLSAIRYALRDIQSNIQEIDAAQSNLRTAQTQLDGMFSDLLDRLNGIARNLSLQEEGIRGLASFADSAPDYTKCGFVGNFYREGFQKNFCGNLHNNLSISWPFMLVAASLLFLSFITFSCFLRKPEWYRDPSYSQLEDRNNLTPGRTPRGSTLMIA 855
            MEQLFKRYHNVSYTIPVLNVTITTSDITEYARIHSLNIGPIVALLFMGSIMTLVWFYLLVCVCCCLSRRGEASRGTSQVVPGAAYSSPTSPSSSASPLACKIELPSSSIERYDDEQRGNESKNMHRSRSLEEEHRKYSFKSLYIASIILSALLGLAVVSIVIYQSKIDASARILMGDVENLVLDSANALCTSDASSRFCTPQSAGDFVRTAETRASGMLTNLVDLLQSLGEELYPPLNGMIDDLDMAEADLEDIKVYISLIMGNRSRIQEYNDWLFATSPDDEVTPLTAALPKGKLPNVTAEQLTKLDDHQSVIIMTRNTSEDVFGKIQNFMQTDVPDAVTRFNTSAPPGTSTQLLMKPLQNVFEKLLRARSLMLRYYALVYEQGERIEDYLAPKTLAVSVIFLLPFVLQIVFTILNRSNQKCSGHLLTNMCCSYLCSVVFLLLAIIFSLLAVVSGTVCEYHLTLLAKVPVQNVTINDVQLSFTPAVIEDILNCPSYPTAPAGATSGNNFISLLGGEKIFDITSQTDEIIAQVEEARTSFTLNAQIQQSIYQLSILENFTALDFANSSEILSYRLEIDALLEDLPPATMDRDDEVQRASLTAYYLTNGSFSWDSYQESLEEINAILAEAAPIPDGFFSSYTFQTVWNFTQATVEADSAWMDVTFVRPKNYEALIAGLVQMDPFTGAVNTAAKTNIQVHANLSAIRYALRDIQSNIQEIDAAQSNLRTAQTQLDGMFSDLLDRLNGIARNLSLQEEGIRGLASFADSAPDYTKCGFVGNFYREGFQKNFCGNLHNNLSISWPFMLVAASLLFLSFITFSCFLRKPEWYRDPSYSQLEDRNNLTPGRTPRGSTLMIA
Sbjct:    1 MEQLFKRYHNVSYTIPVLNVTITTSDITEYARIHSLNIGPIVALLFMGSIMTLVWFYLLVCVCCCLSRRGEASRGTSQVVPGAAYSSPTSPSSSASPLACKIELPSSSIERYDDEQRGNESKNMHRSRSLEEEHRKYSFKSLYIASIILSALLGLAVVSIVIYQSKIDASARILMGDVENLVLDSANALCTSDASSRFCTPQSAGDFVRTAETRASGMLTNLVDLLQSLGEELYPPLNGMIDDLDMAEADLEDIKVYISLIMGNRSRIQEYNDWLFATSPDDEVTPLTAALPKGKLPNVTAEQLTKLDDHQSVIIMTRNTSEDVFGKIQNFMQTDVPDAVTRFNTSAPPGTSTQLLMKPLQNVFEKLLRARSLMLRYYALVYEQGERIEDYLAPKTLAVSVIFLLPFVLQIVFTILNRSNQKCSGHLLTNMCCSYLCSVVFLLLAIIFSLLAVVSGTVCEYHLTLLAKVPVQNVTINDVQLSFTPAVIEDILNCPSYPTAPAGATSGNNFISLLGGEKIFDITSQTDEIIAQVEEARTSFTLNAQIQQSIYQLSILENFTALDFANSSEILSYRLEIDALLEDLPPATMDRDDEVQRASLTAYYLTNGSFSWDSYQESLEEINAILAEAAPIPDGFFSSYTFQTVWNFTQATVEADSAWMDVTFVRPKNYEALIAGLVQMDPFTGAVNTAAKTNIQVHANLSAIRYALRDIQSNIQEIDAAQSNLRTAQTQLDGMFSDLLDRLNGIARNLSLQEEGIRGLASFADSAPDYTKCGFVGNFYREGFQKNFCGNLHNNLSISWPFMLVAASLLFLSFITFSCFLRKPEWYRDPSYSQLEDRNNLTPGRTPRGSTLMIA 855          
BLAST of EWM28824.1 vs. NCBI_GenBank
Match: gi|299470425|emb|CBN80186.1| (hypothetical protein Esi_0116_0070 [Ectocarpus siliculosus])

HSP 1 Score: 105.145 bits (261), Expect = 1.497e-19
Identity = 158/670 (23.58%), Postives = 271/670 (40.45%), Query Frame = 0
Query:  108 SIERYDDEQRGNESKNMHRSRSLEEEHRKYSFKSLYIASIILSALLGLAVVSIVIYQSK--IDASARILMGDVENLVLDSANALCTSDASSRFCTPQSAGDFVRTAETRASGMLTNLVDLLQSLGEELYPPL---------NGMIDDLDMAEADLEDIKVYISLIMGNRSRIQEYNDWLFATSPDDEVTPLTAALPKGKLPNVTAEQLTKLDDHQSVIIMTRNT-SEDVFGKIQNFMQTDVPDAVTRFNTSAPPGTSTQLLMKPLQNVFEKLLRARSLMLRYYAL----VYEQGERIEDYLAPKTLAVSVIFLLPFVLQIVFTILNRSNQKCSGHLLTNMCCSYLCSVVFLLLAIIFSLLAVVSGTVCEYHLTLL-AKVPVQNVTINDVQLSFTPAVIEDILNCPSYPTAPAGATSGNNFISLLGGEKIFDITSQTDEIIAQVEEARTSFTLN----AQIQQSIY----QLSILENFTALDFANSSEILSYRLEIDALLEDLPPATMDRDDEVQRASLTAYYLTNGS-FSWD-------SYQESLEEINAILAEAAP----IPDGFF---SSYTFQTVWNFTQATVEA-DSAWMDVT-------------FVRPKNYEALIAGLVQMDPFTGAVNTAAKTNIQVHANLSAIRYALRDIQSNIQEIDAAQS 723
            +I   + +  G    +M+     E+   K+  K L++ S I+   LG    +   Y      D+S   +    + L+  +  ALC  + S+  C   S GDF+          L  +VD + SL     P L          G++D  +MA  ++ +    ++ I+     + E  D     + D +V      L   +      EQ T+L +  S+ I  + T +E    +I+ +   DV       +      T T +L   LQ +       R L +  Y +    + E  E IE YL     AV+ I  LP V+                 L     CS +C              + ++G +C++H+ L+ A +P  N T+ DV++      +E IL C     A    T  NNF+ +L  ++IF+I+S        ++EA +  T N    A+ + S+     +L  L++F   DF    ++     EID LLED+PP+ +D DD   + S+ ++YL N S +SW+       +Y+  LE +N +++   P    + D F      Y F+   N T  TV A DS +                 +    +++ L   +      T  + T  + N +   +L  I+Y + +I+ NI  I   Q+
Sbjct:   93 AIAEAEGDNDGKGLDDMYEIEDYEDNISKHR-KILWLFSFII--FLGYLFCAGYAYNGAETTDSSFGSIFDGTDVLLTRAQEALCAENGSAD-CADGSVGDFMLEISVALIDRLEGVVDFISSLSAVTAPLLVVSANLGTATGVVDTTEMAVININNSITSVNAIITGDGPVAELMDGETIANIDGDV------LHDIQDGRDALEQATELTESSSLEIAEQLTGNESAITRIK-YQLDDVHGNEILGDEDIRNATLTTVLDDVLQPM-------RDLTVDIYDVQNDDIPEVRENIEVYLDQAVQAVAGIIFLPGVI-----------------LFLTSLCSGVCQS------------SKINGDLCDHHMALIEANLPEFNTTVQDVEILVDFPKVEKILTCSG--DAGDTPTDSNNFVDILEIQQIFNISST-------LKEASSLITDNSALLAEPKDSVLDAQSELGPLDDFVETDFVGDIDMSELSDEIDDLLEDMPPSPLDWDDRDHQDSVDSFYLNNVSGYSWNNASSGNITYRGQLENVNWLISLMVPGIIGVEDAFLDIKDPYNFEQARNLTNETVCATDSPFYPADGQDRYSNSENIEIYAFDDHWDQLCRNVTAYYETTKKLETLIEENDEARQDLEGIQYEMGNIEGNITVITDQQA 706          
The following BLAST results are available for this feature:
BLAST of EWM28824.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Position :
0
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01SequenceEWM28824.1CBN80186.1
Match NameE-valueIdentityDescription
gi|585111247|gb|EWM28824.1|0.000e+0100.00hypothetical protein Naga_100002g73 [Nannochlorops... [more]
gi|299470425|emb|CBN80186.1|1.497e-1923.58hypothetical protein Esi_0116_0070 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1946rna1946Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications