EWM28768.1, cds1914 (CDS) Nannochloropsis gaditana

Overview
NameEWM28768.1
Unique Namecds1914
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:466363..467757 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28768.1
Productzinc iron permease
Orig transcript idgnl|cribi|Naga_100002g101.4887.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:466363..467757 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0046873metal ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0030001metal ion transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003689ZIP
Homology
BLAST of EWM28768.1 vs. NCBI_GenBank
Match: gi|585111191|gb|EWM28768.1| (zinc iron permease [Nannochloropsis gaditana])

HSP 1 Score: 942.184 bits (2434), Expect = 0.000e+0
Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 0
Query:    1 MSWVLLIYTLAIWLVGLGGVLAPIVMASYNKMVLAVCNSFAAGVMLSAGFVHLLHDAVSSLSGLQEKLYGFPISEFVCALSFIMVFYIETLFAPPVKSGEHHHLDHIQVDKGTECFPSQWEWQAGDSPSGLFRSISQTKIRKSERQDLLPPLHQYGAVMPRLAPSSSETEPACEKDTAGVIVENHMNENESKNATEDAGRQLPGKKDSCSQAGKAAHQENDGMRTGLLAHLRQTQAPILPSQSSEGHDEGKAQSLESTHGRVSPGSKSPSTRRSHPGMSAPSHCHSHSRKHSHSLSHSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSYCHTAATVGLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSALFLVA 464
            MSWVLLIYTLAIWLVGLGGVLAPIVMASYNKMVLAVCNSFAAGVMLSAGFVHLLHDAVSSLSGLQEKLYGFPISEFVCALSFIMVFYIETLFAPPVKSGEHHHLDHIQVDKGTECFPSQWEWQAGDSPSGLFRSISQTKIRKSERQDLLPPLHQYGAVMPRLAPSSSETEPACEKDTAGVIVENHMNENESKNATEDAGRQLPGKKDSCSQAGKAAHQENDGMRTGLLAHLRQTQAPILPSQSSEGHDEGKAQSLESTHGRVSPGSKSPSTRRSHPGMSAPSHCHSHSRKHSHSLSHSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSYCHTAATVGLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSALFLVA
Sbjct:    1 MSWVLLIYTLAIWLVGLGGVLAPIVMASYNKMVLAVCNSFAAGVMLSAGFVHLLHDAVSSLSGLQEKLYGFPISEFVCALSFIMVFYIETLFAPPVKSGEHHHLDHIQVDKGTECFPSQWEWQAGDSPSGLFRSISQTKIRKSERQDLLPPLHQYGAVMPRLAPSSSETEPACEKDTAGVIVENHMNENESKNATEDAGRQLPGKKDSCSQAGKAAHQENDGMRTGLLAHLRQTQAPILPSQSSEGHDEGKAQSLESTHGRVSPGSKSPSTRRSHPGMSAPSHCHSHSRKHSHSLSHSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSYCHTAATVGLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSALFLVA 464          
BLAST of EWM28768.1 vs. NCBI_GenBank
Match: gi|301120900|ref|XP_002908177.1| (Zinc (Zn2 )-Iron (Fe2 ) Permease (ZIP) Family [Phytophthora infestans T30-4] >gi|262103208|gb|EEY61260.1| Zinc (Zn2)-Iron (Fe2) Permease (ZIP) Family [Phytophthora infestans T30-4])

HSP 1 Score: 92.0485 bits (227), Expect = 7.584e-17
Identity = 64/173 (36.99%), Postives = 88/173 (50.87%), Query Frame = 0
Query:  290 KHSHSLSHSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSYCHTAATVGLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSALFL 462
            +H     HSHIH    G+  L     AL L  AL FHSVMEG+G+  +TS +          + +AILAHK LA   L    +  +VS+ + L++  +FS  TP G+  G L+    H     G+  A A GTF+ VA +EIIP   +D    Q+ K  +L  G+ AM  L L
Sbjct:  182 EHGTEEPHSHIHGIVKGNPIL-----ALVLFIALSFHSVMEGMGMGASTSPAW--------DILVAILAHKSLAAFALALEFIHHKVSRKQLLVSVAVFSLMTPTGILFGRLLVDTNHATPAGGVCAAFAGGTFLFVAIMEIIPQELQDPR-YQIEKCSALLAGYGAMGVLSL 340          
BLAST of EWM28768.1 vs. NCBI_GenBank
Match: gi|1214690195|gb|OWZ05507.1| (Zinc (Zn2)-Iron (Fe2) Permease, partial [Phytophthora megakarya])

HSP 1 Score: 87.0409 bits (214), Expect = 1.215e-16
Identity = 65/166 (39.16%), Postives = 86/166 (51.81%), Query Frame = 0
Query:  297 HSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSYCHTAATVGLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSALFL 462
            HSHIH    G+  L     AL +  AL FHSVMEG+G+  A+S +  D       + +AILAHK LA   L    L   VS+ + L +  +FS  TP G+  G L+    H     G+  A A GTF+ VA +EIIP   +D    Q+ KL +L  G+ AM  L L
Sbjct:    9 HSHIHGIVKGNPIL-----ALVVFIALSFHSVMEGMGMG-ASSTAAWD-------ILVAILAHKSLAAFALALEFLHHNVSRKQLLSSIAVFSLMTPMGILFGRLLVDSNHATPAGGVCAAFAGGTFLFVAIMEIIPQELQDPR-YQVEKLSALFAGYGAMGVLSL 160          
BLAST of EWM28768.1 vs. NCBI_GenBank
Match: gi|294899829|ref|XP_002776764.1| (zinc transport protein, putative [Perkinsus marinus ATCC 50983] >gi|239883965|gb|EER08580.1| zinc transport protein, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 90.5077 bits (223), Expect = 1.530e-16
Identity = 57/159 (35.85%), Postives = 94/159 (59.12%), Query Frame = 0
Query:  303 EAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGV-LISSYCHTAATVGLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSAL 460
            + H H+   + A A+ +  AL  HS+ EGL L  + + S +          +AI  HKGLA   LG++ + A+VS+   ++ +V+F+  TPAG+A+G  L ++   T    G+  A+AAGTF++V A+E +P +F+  S+  + K ++L VG+ AMSAL
Sbjct:  144 DMHHHDVNMSEASAIFIFLALSVHSIFEGLSLGASNNASQI------ASTLIAIAIHKGLAAYALGASFIEAKVSKWRMVIFSVIFAFMTPAGIAIGWGLEAAESDTEVLSGVCSALAAGTFLYVGALEFVPMSFKPGSSYIIWKFVALLVGYGAMSAL 296          
BLAST of EWM28768.1 vs. NCBI_GenBank
Match: gi|669148254|ref|XP_008609689.1| (hypothetical protein SDRG_05736 [Saprolegnia diclina VS20] >gi|530738666|gb|EQC36908.1| hypothetical protein SDRG_05736 [Saprolegnia diclina VS20])

HSP 1 Score: 90.1225 bits (222), Expect = 2.002e-16
Identity = 83/240 (34.58%), Postives = 115/240 (47.92%), Query Frame = 0
Query:  228 LAHLRQTQ--APILPSQSSEGHDEGKAQS---LESTHGRVSPGSKSPSTRRSHPGMSAPSHCHSHSRKHSHSLSHSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSY--CHTAATVGLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSAL 460
            LAH  Q Q  A + P  +SE  D+ K  S   LE       P +K                     RK SH   H      A G     TVA    L  AL FHSV+EGLG+  A SQ          GVFLAI+ HKGLA   LG+ ML +++++T+FL   +LFS  +  G+ +G  +++      +A  G+  A+A+GTFI+VA +EIIP  F    ++ L K + L  G+    A+
Sbjct:   99 LAHALQAQGHAHVEPDTTSEDSDDHKMDSAPFLEQVEAATPPVAKK-------------------GRKKSHD-GHIAFDKNASG-----TVA--FVLFVALSFHSVLEGLGIG-AQSQP-------AWGVFLAIIIHKGLAAFALGTGMLKSQMNKTKFLSYMLLFSLMSIFGIIIGWAVNAAESSEDSAAAGICLALASGTFIYVAVMEIIPQEFSHGKSS-LKKTLLLCAGYAVFGAI 302          

HSP 2 Score: 63.1586 bits (152), Expect = 2.048e-7
Identity = 33/105 (31.43%), Postives = 60/105 (57.14%), Query Frame = 0
Query:    6 LIYTLAIWLVGLGGVLAPIVMASYNKMVLAVCNSFAAGVMLSAGFVHLLHDAVSS-----LSGLQEKLYGFPISEFVCALSFIMVFYIETLFAPPVKSGEHHHLD 105
            L+  ++IW+VG  G + P  +  +N+++++  N  + GV L+ GF+HLLH A+ +      S + E  Y FP +E  C + F+ V  +E L A  +++  H H++
Sbjct:    9 LVSLVSIWVVGFVGGVLPFFIRQHNRVLMSQLNCMSGGVFLAGGFMHLLHAAIENPGLVRWSTMDEGAYAFPYAEMFCTIGFLGVLIVEQL-AHALQAQGHAHVE 112          
BLAST of EWM28768.1 vs. NCBI_GenBank
Match: gi|294899827|ref|XP_002776763.1| (Zinc transporter, putative [Perkinsus marinus ATCC 50983] >gi|239883964|gb|EER08579.1| Zinc transporter, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 89.7373 bits (221), Expect = 2.006e-16
Identity = 60/173 (34.68%), Postives = 92/173 (53.18%), Query Frame = 0
Query:  289 RKHSHSLSHSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSYCHTAATV-GLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSAL 460
            ++ S +L       E   H ++ +   A+ +  AL  HS++EG+  AT  +  + D  GT V    AILAHKGLA   LG+ M+ A VS+   LL  ++F+  TP G+ +G L S    +A    G+  ++AAGTFI+V+ +E  P  FR      + K++S   GF  M+ L
Sbjct:  115 KRPSDNLDSDERILEPDMHSNVFSETSAIFVFLALSVHSILEGM--ATGVASGVDDLYGTLV----AILAHKGLAAFALGANMVEARVSRYRVLLYGLIFAMGTPVGIIIGWLGSRGEESAGLFSGIANSLAAGTFIYVSVMEFFPVTFRHDRGRFIFKVLSFIAGFSLMAIL 281          
BLAST of EWM28768.1 vs. NCBI_GenBank
Match: gi|294899825|ref|XP_002776762.1| (Zinc transporter, putative [Perkinsus marinus ATCC 50983] >gi|239883963|gb|EER08578.1| Zinc transporter, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 88.9669 bits (219), Expect = 3.661e-16
Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = 0
Query:  289 RKHSHSLSHSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSYCHTAATV-GLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSAL 460
            +  S +L       E   H ++ +   A+ +  AL  HS++EG+  AT  +  + D  GT V    AILAHKGLA   LG+ M+ A VS+   LL  ++F+  TP G+ +G L S    +A    G+  ++AAGTFI+V+ +E  P  FR      + K++S   GF  M+ L
Sbjct:  115 KSPSDNLDSDKRISEPDMHSNVFSETSAIFVFLALSVHSILEGM--ATGVASGVDDLYGTLV----AILAHKGLAAFALGANMVEARVSRYRVLLYGLIFAMGTPVGIIIGWLGSRGEESAGLFSGIANSLAAGTFIYVSVMEFFPVTFRHDRGRFIFKVVSFIAGFSLMAIL 281          
BLAST of EWM28768.1 vs. NCBI_GenBank
Match: gi|675162985|ref|XP_008890377.1| (hypothetical protein PPTG_00688 [Phytophthora parasitica INRA-310] >gi|568109697|gb|ETN24304.1| hypothetical protein PPTG_00688 [Phytophthora parasitica INRA-310] >gi|570961525|gb|ETP26504.1| hypothetical protein F441_00802 [Phytophthora parasitica CJ01A1] >gi|970649611|gb|KUF88832.1| Zinc (Zn2)-Iron (Fe2) Permease (ZIP) Family [Phytophthora nicotianae])

HSP 1 Score: 90.1225 bits (222), Expect = 3.686e-16
Identity = 63/166 (37.95%), Postives = 84/166 (50.60%), Query Frame = 0
Query:  297 HSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSYCHTAATVGLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSALFL 462
            HSHIH    G+  L     AL +  AL FHSVMEG+G+  ++S +          + +AILAHK LA   L    L   VS+ + L T  +FS  TP G+  G L+    H     G+  A A GTF+ VA +EIIP   +D    Q+ K  +L  G+ AM  L L
Sbjct:  196 HSHIHGIVKGNPIL-----ALVVFIALSFHSVMEGMGMGASSSAAW--------DILVAILAHKSLAAFALALEFLHHNVSRKQLLSTVAIFSLMTPTGILFGRLLVDTNHATPAGGVCAAFAGGTFLFVAIMEIIPQELQDPR-YQIEKCSALLAGYGAMGVLSL 347          
BLAST of EWM28768.1 vs. NCBI_GenBank
Match: gi|566033811|gb|ETI56722.1| (hypothetical protein F443_00837 [Phytophthora parasitica P1569] >gi|567971513|gb|ETK96519.1| hypothetical protein L915_00760 [Phytophthora parasitica] >gi|567999838|gb|ETL49871.1| hypothetical protein L916_00753 [Phytophthora parasitica] >gi|568029024|gb|ETM02956.1| hypothetical protein L917_00725 [Phytophthora parasitica] >gi|568059622|gb|ETM56195.1| hypothetical protein L914_00769 [Phytophthora parasitica] >gi|570337518|gb|ETO85466.1| hypothetical protein F444_00829 [Phytophthora parasitica P1976] >gi|570998293|gb|ETP54541.1| hypothetical protein F442_00773 [Phytophthora parasitica P10297])

HSP 1 Score: 90.1225 bits (222), Expect = 3.756e-16
Identity = 63/166 (37.95%), Postives = 84/166 (50.60%), Query Frame = 0
Query:  297 HSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSYCHTAATVGLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSALFL 462
            HSHIH    G+  L     AL +  AL FHSVMEG+G+  ++S +          + +AILAHK LA   L    L   VS+ + L T  +FS  TP G+  G L+    H     G+  A A GTF+ VA +EIIP   +D    Q+ K  +L  G+ AM  L L
Sbjct:  196 HSHIHGIVKGNPIL-----ALVVFIALSFHSVMEGMGMGASSSAAW--------DILVAILAHKSLAAFALALEFLHHNVSRKQLLSTVAIFSLMTPTGILFGRLLVDTNHATPAGGVCAAFAGGTFLFVAIMEIIPQELQDPR-YQIEKCSALLAGYGAMGVLSL 347          
BLAST of EWM28768.1 vs. NCBI_GenBank
Match: gi|673041275|ref|XP_008874598.1| (hypothetical protein H310_10112 [Aphanomyces invadans] >gi|574469808|gb|ETV96821.1| hypothetical protein H310_10112 [Aphanomyces invadans])

HSP 1 Score: 88.9669 bits (219), Expect = 5.440e-16
Identity = 60/150 (40.00%), Postives = 83/150 (55.33%), Query Frame = 0
Query:  289 RKHSHSLSHSHIHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLI--SSYCHTAATVGLMGAVAAGTFIHVAAIEIIPSAF 436
            RK SH       HDE    +   + A A  L  AL FHSV+EGLG+   ++ +         GVFLAI+ HKGLA   LGS ML ++V++ +F+    LFS  +  G+ +G  I  S     +A  G+  A+A+GTFI+VA +EIIP  F
Sbjct:  152 RKKSHDE-----HDEHLAFDKNASGAVAFVLFVALSFHSVLEGLGIGAQSTSAW--------GVFLAIILHKGLAAFALGSGMLKSQVNKAKFIAYMFLFSMMSILGIIVGWCIADSEESEDSAAAGICLALASGTFIYVAVMEIIPLEF 288          

HSP 2 Score: 65.0846 bits (157), Expect = 5.102e-8
Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 0
Query:    6 LIYTLAIWLVGLGGVLAPIVMASYNKMVLAVCNSFAAGVMLSAGFVHLLHDA-----VSSLSGLQEKLYGFPISEFVCALSFIMVFYIETL 91
            L+  ++IW+VG GG + P  +   N+ +++  N  + GV L+ GF+HLLH A     ++  S + E +Y FP +E  C + F+ V  IE L
Sbjct:   11 LVSLVSIWVVGFGGGVLPFFIRQQNRKLMSRLNCLSGGVFLAGGFMHLLHAAMENPGLAKWSTVDEGIYAFPYAEMFCTIGFLGVLIIEQL 101          
The following BLAST results are available for this feature:
BLAST of EWM28768.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111191|gb|EWM28768.1|0.000e+0100.00zinc iron permease [Nannochloropsis gaditana][more]
gi|301120900|ref|XP_002908177.1|7.584e-1736.99Zinc (Zn2 )-Iron (Fe2 ) Permease (ZIP) Family [Phy... [more]
gi|1214690195|gb|OWZ05507.1|1.215e-1639.16Zinc (Zn2)-Iron (Fe2) Permease, partial [Phytophth... [more]
gi|294899829|ref|XP_002776764.1|1.530e-1635.85zinc transport protein, putative [Perkinsus marinu... [more]
gi|669148254|ref|XP_008609689.1|2.002e-1634.58hypothetical protein SDRG_05736 [Saprolegnia dicli... [more]
gi|294899827|ref|XP_002776763.1|2.006e-1634.68Zinc transporter, putative [Perkinsus marinus ATCC... [more]
gi|294899825|ref|XP_002776762.1|3.661e-1634.68Zinc transporter, putative [Perkinsus marinus ATCC... [more]
gi|675162985|ref|XP_008890377.1|3.686e-1637.95hypothetical protein PPTG_00688 [Phytophthora para... [more]
gi|566033811|gb|ETI56722.1|3.756e-1637.95hypothetical protein F443_00837 [Phytophthora para... [more]
gi|673041275|ref|XP_008874598.1|5.440e-1640.00hypothetical protein H310_10112 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1919rna1919Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications