EWM30522.1, cds190 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30522.1 vs. NCBI_GenBank
Match: gi|585113186|gb|EWM30522.1| (hypothetical protein Naga_100013g27 [Nannochloropsis gaditana]) HSP 1 Score: 2678.28 bits (6941), Expect = 0.000e+0 Identity = 1291/1291 (100.00%), Postives = 1291/1291 (100.00%), Query Frame = 0
Query: 1 MTDEEENDAVSNDKPRNSLPSDSIRVAPDVPGVSPLKHSHQSLLHDTGIGDQWVEYNRNLGSNCDFRTSTTSKRPFLEPLNDISTSPSRHTYGEASPSSASVRTPRKDNMGIYLTRVATGLRSTVKHAFRWRKRPPGPRDVRPSVRAFYYKLLNASRPALACFLATGVSMVYPWSHKVTWFSITLSISGVGRNLGHTLAGIRQQWMGITVAVPLCFLLKFLEFSKVLTAIAIFLVSVAVCGSDMLNEAAKQVSLIFITWVVLVALVTPDTTMEDLLLDLIKAVLGANIFCTVVMLFPSPRLAVRLCRWRLEELQEVLGRFLEDAVDSYCLQDDSGLHDLEAVIDEAVSLIETIRALLPDVDFELALLSCGCQRSASRRTYDHVVEYLGILEDQLENCRGMAVALSDMYPNATHSEFVRAMRPGLLDVVTESKKVLEGTCYHLSAALQYWIQQKWWWRLCYRGRGPWRPPKTQSFVGRECATRSAQSSRGDGKHKHVSIHMEDAGKPQHGGLFSRRPNSSLYSEGGDHEQARAPNCAAEENTTMSLSGPISEQEREHLSRAPPSFYDIDPQCEDVEDCVPGELFSPPKAALARVLHALLKTRMRVVYGVELKGTAPDDRIEPVHELPSKMRQDDLRVLSIDRLAMRSPRSVVLERSRTAAVAAASFQKDSERRGYMNLLPRNAFVLDLKMFVAAFERHRILCNVSMVAVEPSATSTREQKTCCSLATSVFVNAYRNICRGPGEGWDAWRQPLKVALAILLASIVVLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTTWAPVVNKVAIVFILTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPVVGSSGAVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVEKLGNLCRDGLAIFQTEIALGSRNKDEQNENRGDTVEQHNASPARNKIVGTFDDGGSTGIVTEADEEPQTSLTFKNDETPEFTILEKVKRSALFRFVGWGKGKNGKKIHKTPKPVKMTETHTSPPTPAVETSAHLMAVVQAAEARMRRNTVIIQQALSKEELYISYASDEPELWHKPFQRMAYLKVYAIQLRMHKYLLMLHRSAASFPRTLARCDLEMLQAYGSIILRLQRTLEAVFNDVLLRLRRLAKKSSSTGASAQSMENLSSPIMKQGGVNVFRLRQEFCDIQDAIDDLVADYFAKDPVLTSLDFIVPLNGMIYSTRKMSPECVAFVQAVRELKFQEKRIGRGVPMAAAVMKEMALPVFGTEKIGNEREGEKTKEQMD 1291
MTDEEENDAVSNDKPRNSLPSDSIRVAPDVPGVSPLKHSHQSLLHDTGIGDQWVEYNRNLGSNCDFRTSTTSKRPFLEPLNDISTSPSRHTYGEASPSSASVRTPRKDNMGIYLTRVATGLRSTVKHAFRWRKRPPGPRDVRPSVRAFYYKLLNASRPALACFLATGVSMVYPWSHKVTWFSITLSISGVGRNLGHTLAGIRQQWMGITVAVPLCFLLKFLEFSKVLTAIAIFLVSVAVCGSDMLNEAAKQVSLIFITWVVLVALVTPDTTMEDLLLDLIKAVLGANIFCTVVMLFPSPRLAVRLCRWRLEELQEVLGRFLEDAVDSYCLQDDSGLHDLEAVIDEAVSLIETIRALLPDVDFELALLSCGCQRSASRRTYDHVVEYLGILEDQLENCRGMAVALSDMYPNATHSEFVRAMRPGLLDVVTESKKVLEGTCYHLSAALQYWIQQKWWWRLCYRGRGPWRPPKTQSFVGRECATRSAQSSRGDGKHKHVSIHMEDAGKPQHGGLFSRRPNSSLYSEGGDHEQARAPNCAAEENTTMSLSGPISEQEREHLSRAPPSFYDIDPQCEDVEDCVPGELFSPPKAALARVLHALLKTRMRVVYGVELKGTAPDDRIEPVHELPSKMRQDDLRVLSIDRLAMRSPRSVVLERSRTAAVAAASFQKDSERRGYMNLLPRNAFVLDLKMFVAAFERHRILCNVSMVAVEPSATSTREQKTCCSLATSVFVNAYRNICRGPGEGWDAWRQPLKVALAILLASIVVLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTTWAPVVNKVAIVFILTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPVVGSSGAVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVEKLGNLCRDGLAIFQTEIALGSRNKDEQNENRGDTVEQHNASPARNKIVGTFDDGGSTGIVTEADEEPQTSLTFKNDETPEFTILEKVKRSALFRFVGWGKGKNGKKIHKTPKPVKMTETHTSPPTPAVETSAHLMAVVQAAEARMRRNTVIIQQALSKEELYISYASDEPELWHKPFQRMAYLKVYAIQLRMHKYLLMLHRSAASFPRTLARCDLEMLQAYGSIILRLQRTLEAVFNDVLLRLRRLAKKSSSTGASAQSMENLSSPIMKQGGVNVFRLRQEFCDIQDAIDDLVADYFAKDPVLTSLDFIVPLNGMIYSTRKMSPECVAFVQAVRELKFQEKRIGRGVPMAAAVMKEMALPVFGTEKIGNEREGEKTKEQMD
Sbjct: 1 MTDEEENDAVSNDKPRNSLPSDSIRVAPDVPGVSPLKHSHQSLLHDTGIGDQWVEYNRNLGSNCDFRTSTTSKRPFLEPLNDISTSPSRHTYGEASPSSASVRTPRKDNMGIYLTRVATGLRSTVKHAFRWRKRPPGPRDVRPSVRAFYYKLLNASRPALACFLATGVSMVYPWSHKVTWFSITLSISGVGRNLGHTLAGIRQQWMGITVAVPLCFLLKFLEFSKVLTAIAIFLVSVAVCGSDMLNEAAKQVSLIFITWVVLVALVTPDTTMEDLLLDLIKAVLGANIFCTVVMLFPSPRLAVRLCRWRLEELQEVLGRFLEDAVDSYCLQDDSGLHDLEAVIDEAVSLIETIRALLPDVDFELALLSCGCQRSASRRTYDHVVEYLGILEDQLENCRGMAVALSDMYPNATHSEFVRAMRPGLLDVVTESKKVLEGTCYHLSAALQYWIQQKWWWRLCYRGRGPWRPPKTQSFVGRECATRSAQSSRGDGKHKHVSIHMEDAGKPQHGGLFSRRPNSSLYSEGGDHEQARAPNCAAEENTTMSLSGPISEQEREHLSRAPPSFYDIDPQCEDVEDCVPGELFSPPKAALARVLHALLKTRMRVVYGVELKGTAPDDRIEPVHELPSKMRQDDLRVLSIDRLAMRSPRSVVLERSRTAAVAAASFQKDSERRGYMNLLPRNAFVLDLKMFVAAFERHRILCNVSMVAVEPSATSTREQKTCCSLATSVFVNAYRNICRGPGEGWDAWRQPLKVALAILLASIVVLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTTWAPVVNKVAIVFILTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPVVGSSGAVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVEKLGNLCRDGLAIFQTEIALGSRNKDEQNENRGDTVEQHNASPARNKIVGTFDDGGSTGIVTEADEEPQTSLTFKNDETPEFTILEKVKRSALFRFVGWGKGKNGKKIHKTPKPVKMTETHTSPPTPAVETSAHLMAVVQAAEARMRRNTVIIQQALSKEELYISYASDEPELWHKPFQRMAYLKVYAIQLRMHKYLLMLHRSAASFPRTLARCDLEMLQAYGSIILRLQRTLEAVFNDVLLRLRRLAKKSSSTGASAQSMENLSSPIMKQGGVNVFRLRQEFCDIQDAIDDLVADYFAKDPVLTSLDFIVPLNGMIYSTRKMSPECVAFVQAVRELKFQEKRIGRGVPMAAAVMKEMALPVFGTEKIGNEREGEKTKEQMD 1291
BLAST of EWM30522.1 vs. NCBI_GenBank
Match: gi|585103755|gb|EWM22996.1| (p-hydroxybenzoic acid efflux pump subunit aaeb, partial [Nannochloropsis gaditana]) HSP 1 Score: 166.007 bits (419), Expect = 1.852e-39 Identity = 85/176 (48.30%), Postives = 117/176 (66.48%), Query Frame = 0
Query: 748 RQPLKVALAILLASIVVLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTTWAPVVNKVAIVFILTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPVVGSSGAVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVEKLGNLCRDGLAIF 923
RQPLKVALA +L ++ +L G +T W I V Q++SSHP S+FK+G R+QGTVLG + G+ V W + +A+V LT WVF CAF+R S YGE A A +TAPII++GP++G +GA++RI Q ILG+ IYV VDN+ +P RAK+ LR +L S+ +L +IF
Sbjct: 108 RQPLKVALAYVLVTLTMLILT---GPRTPWGLIAVCQSLSSHPGSSFKAGLQRIQGTVLGGMFGIVVLNWLQWDSNLAVVLSLTGWVFFCAFNRLSPLYGEVALMAAVTAPIILMGPILGEAGAMIRIQQTILGSFIYVFVDNVFWPVRAKLDLRRELLTSLGLFRDLWGRTFSIF 280
BLAST of EWM30522.1 vs. NCBI_GenBank
Match: gi|585103750|gb|EWM22994.1| (hypothetical protein Naga_100761g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 136.346 bits (342), Expect = 9.988e-30 Identity = 94/302 (31.13%), Postives = 150/302 (49.67%), Query Frame = 0
Query: 148 FYYKLLNASRPALACFLATGVSMVY-PWSHKVTWFSITLSISGVGRNLGHTLAGIRQQWMGITVAVPLCFLLKFLEFSKVLTAIAIFLVSVAVCGSDMLNEAAKQVSLIFITWVVLVALVTPDTTMEDLLLDLIKAVLGANIFCTVVML--FPSPRLAVRLCRWRLEELQEVLGRFLEDAVDSYCLQDDSGLHDLEAVIDEAVSLIETIRALLPDVDFELALLSCGCQRSASRRTYDHVVEYLGILEDQLENCRGMAVALSDMYPNATHSEFVRAMRPGLLDVVTESKKVLEGTCYHLSAAL 446
F+ KL R ALA LAT S + W+H +TWFS+TL +SG +LG TL W G TV +PL +L++ S LT +F + +++ K+++ IF+T VV+ ++ P ++ D+ +L AN F + +L FPSP LA+ R +L ++ LG L +++ L ++ LE ++ E + + I+ +P V +E LL + +L +E QLE RGM ++L M NATH EF++ ++ L VV S V + H+ A L
Sbjct: 221 FHRKLRLGFRTALAIALATTTSQFFWNWAHILTWFSVTLVVSGTHESLGRTLRTAFDFWKGFTVVLPLVYLIRPNRDSTPLTITGLFFSVAFLIWLPGISDPGKRMATIFLTIVVIYCVLDPALLYNHMVRDVCFTLLFANAFSIIALLLPFPSPSLALLDVRVKLGMVRHRLGSILRGCNEAFSLGEEVHYSMLEQLLQETSATVADIKEQIPFVKWEAVLLRLPVSMPG------QLESFLTTIEAQLELFRGMRLSLRRMSNNATHQEFLKYLQEPLSQVVKASVAVSDAAARHIEAEL 516
BLAST of EWM30522.1 vs. NCBI_GenBank
Match: gi|1026761894|gb|OAE23258.1| (hypothetical protein AXG93_620s1250 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 85.1149 bits (209), Expect = 7.164e-13 Identity = 58/197 (29.44%), Postives = 105/197 (53.30%), Query Frame = 0
Query: 752 KVALAILLASIV---VLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTTWAPVVNKVAIVFILTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPVVGS---SGAVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVEKLGNLCRDGLAIFQT-EIALGSRN---KDEQN 938
KV++ ++LA++ L +D H W PITV+ + + AF+ + R+QGT +G++ G V + +K + IL WV + R S+T+G + + LTA I+++G G + A+ RI+ +G +V V+ L+ P RA +L+R +L +S+++L + +A++ + E+ L R KD Q
Sbjct: 550 KVSMIMMLATVFGVHALPNDIH----ACWAPITVSFIIGNLQGGAFRLASLRIQGTAVGSIFGYLVVS-ELYNHKYILPLILAGWVSFSDYIRYSKTHGYSGLVSALTAAILMVGDFDGQDIKAFAMDRIAMTFIGVACFVLVETLLLPERAVVLVREELLQSLKRLRDCVAAIVAVYTSHEVCLKCRTSAVKDMQK 741
BLAST of EWM30522.1 vs. NCBI_GenBank
Match: gi|1026757173|gb|OAE19487.1| (hypothetical protein AXG93_1040s1510 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 81.6481 bits (200), Expect = 7.562e-12 Identity = 59/216 (27.31%), Postives = 111/216 (51.39%), Query Frame = 0
Query: 722 CSLATSVFVNAYRNICRGPGEGWDAWR-----QPLKVALAILLASIVVLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTTWAPVVNKVAIVFILTA---WVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPVVGSSGA------VVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVEKLGNLCRDGLAIF 923
C + ++ N + +C E + +++ + LK++LA+ +A++ + +K W +TV + +H +F+ R+QGTV+G++ + +V F+L A WV V ++ R S+ +G A AGLTA I+++G S+GA V RI++ +G + + V++L+FP RA IL R +L S+ L + + +A +
Sbjct: 528 CVIKDTMIQNIWARVC----ESFCSFKYQQVVRALKISLAMAIAALAGILYNKKFAF---WAVVTVGFIIQNHQGGSFRMANLRLQGTVIGSIYAYLMV----IVIHDHPDFVLVALIPWVVVLSYLRFSKLFGAAGVIAGLTAAIVMLG----SNGAPIQELAVTRITENFIGVLALIFVESLVFPDRAAILCRKELVSSLVDLRDCVKAVVAAY 728
BLAST of EWM30522.1 vs. NCBI_GenBank
Match: gi|1026767036|gb|OAE27406.1| (hypothetical protein AXG93_2015s1350 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 80.4925 bits (197), Expect = 1.658e-11 Identity = 56/190 (29.47%), Postives = 100/190 (52.63%), Query Frame = 0
Query: 742 EGWDAWRQ-----PLKVALAILLASIVVLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTTWAPVVNKVAIVFILTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPVVGSS---GAVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVEKLGNLCRDGLAIF 923
+GW +++ KV+LA+ LA+ LA + W ++VA M + +F+ R+QGTVLG++ + ++ ++ L WV + ++ R S+ +G + AGLTA I+++G G S AVVRI+Q +G + + V+ +I+P RA IL R +L S+ L + + +A++
Sbjct: 696 QGWKRFKREQALRAFKVSLAMSLAA---LAGCMYNEAYAFWAMVSVAFIMQNQQGGSFRMANLRLQGTVLGSIYAYLMLNLMSKHPQL-LLLALVPWVVLLSYLRFSKLFGASGVIAGLTAAIVMLGAEGGMSIQQLAVVRITQNFIGVLALILVETIIWPERAVILSRRELVLSLIDLRDCVKAVVAVY 881
BLAST of EWM30522.1 vs. NCBI_GenBank
Match: gi|1026763400|gb|OAE24457.1| (hypothetical protein AXG93_1615s1100 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 78.5666 bits (192), Expect = 6.081e-11 Identity = 59/240 (24.58%), Postives = 118/240 (49.17%), Query Frame = 0
Query: 725 ATSVFVNAYRNICRGPGEGWDAWRQPLKVALAILLASI---VVLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVT------TWAPVVNKVAIVFILTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPVVGS--SGAVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVEKLGNLCRDGLAIFQTEIALGSRN------KDEQNENRGDTVEQ 947
A S F + I G R+ K+AL++++A+ ++++ + H + W +TV + ++ +++ + R+QGTVLGA+ G +WA N +A++ WV + +F R S YG + + TA ++++G A+ RI++ +G + +V V+ ++FP RA +L+R +L S+ L + +A++ + L R+ K+ + + R V+Q
Sbjct: 537 AVSRFFSKAHEILHKCGASRAQARRSFKIALSMVMAATFGNLIVSQEAH----SFWATVTVGFIIGNYQGGSWRISSLRLQGTVLGAIYGYLALRVSKNHSWA---NLLALI----PWVVLSSFVRYSTAYGYSGLVSAFTAAVLILGGFENDIRKYAMDRITETFVGVLSFVFVETVVFPERAVLLVRKELVSSLIGLRDCVAAIVAVYTEQECLDCRSIAVHEIKELEQQLRASFVKQ 765
BLAST of EWM30522.1 vs. NCBI_GenBank
Match: gi|1147596266|ref|XP_020102031.1| (uncharacterized protein LOC109719659 [Ananas comosus]) HSP 1 Score: 76.6406 bits (187), Expect = 2.637e-10 Identity = 64/202 (31.68%), Postives = 104/202 (51.49%), Query Frame = 0
Query: 751 LKVALAILLASIVVLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTTWAPVVNKVAIVFI-LTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPV-VGS--SGAVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVEKLGNLCRDGL----AIFQTEIAL-GSRNKDEQNENRGD 943
L +ALA+L V+ + D W +TVA TM+ H S FK R QGT LG+V G+ + N + + F+ L W+ +F R SR Y +A A + + +I++G GS + A+ R+++ +G + V+ L+ PTRA L R+QL +S++ + C+D + A+ + E L G NK ++ N D
Sbjct: 441 LSLALAVLFG--VLFSRD-----NGYWSGLTVAITMTPHRESTFKLANLRAQGTALGSVYGVLGAIISQ--NLMELRFLTLLPWIIFTSFLRNSRMYAQAGGMAAIISALIILGRRDYGSPTAFAITRLTETFIGFSCSIFVEVLVQPTRASTLARNQLHQSLKTVRE-CKDCVLNPGALKEKERRLKGQVNKLKKYINEAD 632
BLAST of EWM30522.1 vs. NCBI_GenBank
Match: gi|1035964330|gb|OAY84726.1| (hypothetical protein ACMD2_06873 [Ananas comosus]) HSP 1 Score: 75.8702 bits (185), Expect = 3.578e-10 Identity = 64/202 (31.68%), Postives = 104/202 (51.49%), Query Frame = 0
Query: 751 LKVALAILLASIVVLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTTWAPVVNKVAIVFI-LTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPV-VGS--SGAVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVEKLGNLCRDGL----AIFQTEIAL-GSRNKDEQNENRGD 943
L +ALA+L V+ + D W +TVA TM+ H S FK R QGT LG+V G+ + N + + F+ L W+ +F R SR Y +A A + + +I++G GS + A+ R+++ +G + V+ L+ PTRA L R+QL +S++ + C+D + A+ + E L G NK ++ N D
Sbjct: 385 LSLALAVLFG--VLFSRD-----NGYWSGLTVAITMTPHRESTFKLANLRAQGTALGSVYGVLGAIISQ--NLMELRFLTLLPWIIFTSFLRNSRMYAQAGGMAAIISALIILGRRDYGSPTAFAITRLTETFIGFSCSIFVEVLVQPTRASTLARNQLHQSLKTVRE-CKDCVLNPGALKEKERRLKGQVNKLKKYINEAD 576
BLAST of EWM30522.1 vs. NCBI_GenBank
Match: gi|971506935|dbj|GAQ91269.1| (hypothetical protein KFL_007550015 [Klebsormidium nitens]) HSP 1 Score: 75.8702 bits (185), Expect = 4.315e-10 Identity = 49/165 (29.70%), Postives = 89/165 (53.94%), Query Frame = 0
Query: 752 KVALAILLASIVVLADDKHLGLQTIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTTWAPVVNK--VAIVFILTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGPVVGSSG----AVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESVE 910
KVA A+ + ++ + ++ G W +T+A + + ++F++ R+QGTV GA+ G V VV+ VA+ +L WV + F R S+ YG + AG TA II++G + A+ RI++ +G V ++ V+ ++P RA +L+R L +++
Sbjct: 513 KVACAVGVGGLLGIIAGRNYGY---WAVVTIAFIIGGYQGTSFRAAWLRLQGTVAGAIYGYLVIL---VVHGHPVAVGALLVPWVALVTFIRYSKAYGYSGVVAGFTAAIIMLGYKSSNQNVQDYALGRITETCIGIVTFIVVETCVWPNRAALLVREALISALQ 671 The following BLAST results are available for this feature:
BLAST of EWM30522.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|