EWM30652.1, cds19 (CDS) Nannochloropsis gaditana

Overview
NameEWM30652.1
Unique Namecds19
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:62588..62685 -
Alignment locationCM002455.1:62268..62406 -
Alignment locationCM002455.1:61845..61971 -
Alignment locationCM002455.1:61587..61690 -
Alignment locationCM002455.1:61162..61281 -
Alignment locationCM002455.1:59805..59909 -
Alignment locationCM002455.1:59532..59655 -
Alignment locationCM002455.1:59178..59290 -
Alignment locationCM002455.1:58910..59001 -
Alignment locationCM002455.1:58489..58696 -
Alignment locationCM002455.1:57821..58321 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30652.1
Productserine-threonine protein kinase-like protein
Orig transcript idgnl|cribi|Naga_100242g4.5820.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:62588..62685 -
CM002455.1supercontigCM002455.1:62268..62406 -
CM002455.1supercontigCM002455.1:61845..61971 -
CM002455.1supercontigCM002455.1:61587..61690 -
CM002455.1supercontigCM002455.1:61162..61281 -
CM002455.1supercontigCM002455.1:59805..59909 -
CM002455.1supercontigCM002455.1:59532..59655 -
CM002455.1supercontigCM002455.1:59178..59290 -
CM002455.1supercontigCM002455.1:58910..59001 -
CM002455.1supercontigCM002455.1:58489..58696 -
CM002455.1supercontigCM002455.1:57821..58321 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
Homology
[Close]
BLAST of EWM30652.1 vs. NCBI_GenBank
Match: gi|585113346|gb|EWM30652.1| (serine-threonine protein kinase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 1162.52 bits (3006), Expect = 0.000e+0
Identity = 576/576 (100.00%), Postives = 576/576 (100.00%), Query Frame = 0 
Query:    1 MPPTNPDSLVITSVGDATPPLPLAYGKLTLECTNEAFPAELQGVPKEILLALSKHTVGRVPISGGEGVEGLWKGSAPIKIPRHYVLNKAYISSMHCRFEVLEDAEGAEEKENSRASGRWEPGEHARSLSLRLTDTSTNGTYVNGTPVGKGKSVLLMDGDLVTLYRPRDTHKPALSYLYRVKKEGYTDMAYRARRHDVAELGGSLAAERRERERMNTALEKESGRAKSLEGKLNDLKKSCMALEEEAHRVSLDLRQAREEKEEAQRLVDENNNALAGHEAVKGEVMELRTIVENQREEIERKRKELDRLQGHAVKHERLLEEKLAAQQLAKETKEELEAKIKDLDSLTSRVSALQAAVDASMEEVGLLQSSHASLQGKEAQLLADLAAADKRKGGVEEEARVLRDRVSQLETGQRAALESFKEWQVASATLLSSVELHLQVPLQCFRPSPSSPITQVQQHPQAPTQLSAAGSPCEAEGEAGEGGREREGVQKRRRGGRGLDLINEEGEMEGEEEESAVIMEDGREGNNVEEARRNSAGTFAVECESKRQKVYEGRRAFDPESDGEENEETLQGKEKK 576
            MPPTNPDSLVITSVGDATPPLPLAYGKLTLECTNEAFPAELQGVPKEILLALSKHTVGRVPISGGEGVEGLWKGSAPIKIPRHYVLNKAYISSMHCRFEVLEDAEGAEEKENSRASGRWEPGEHARSLSLRLTDTSTNGTYVNGTPVGKGKSVLLMDGDLVTLYRPRDTHKPALSYLYRVKKEGYTDMAYRARRHDVAELGGSLAAERRERERMNTALEKESGRAKSLEGKLNDLKKSCMALEEEAHRVSLDLRQAREEKEEAQRLVDENNNALAGHEAVKGEVMELRTIVENQREEIERKRKELDRLQGHAVKHERLLEEKLAAQQLAKETKEELEAKIKDLDSLTSRVSALQAAVDASMEEVGLLQSSHASLQGKEAQLLADLAAADKRKGGVEEEARVLRDRVSQLETGQRAALESFKEWQVASATLLSSVELHLQVPLQCFRPSPSSPITQVQQHPQAPTQLSAAGSPCEAEGEAGEGGREREGVQKRRRGGRGLDLINEEGEMEGEEEESAVIMEDGREGNNVEEARRNSAGTFAVECESKRQKVYEGRRAFDPESDGEENEETLQGKEKK
Sbjct:    1 MPPTNPDSLVITSVGDATPPLPLAYGKLTLECTNEAFPAELQGVPKEILLALSKHTVGRVPISGGEGVEGLWKGSAPIKIPRHYVLNKAYISSMHCRFEVLEDAEGAEEKENSRASGRWEPGEHARSLSLRLTDTSTNGTYVNGTPVGKGKSVLLMDGDLVTLYRPRDTHKPALSYLYRVKKEGYTDMAYRARRHDVAELGGSLAAERRERERMNTALEKESGRAKSLEGKLNDLKKSCMALEEEAHRVSLDLRQAREEKEEAQRLVDENNNALAGHEAVKGEVMELRTIVENQREEIERKRKELDRLQGHAVKHERLLEEKLAAQQLAKETKEELEAKIKDLDSLTSRVSALQAAVDASMEEVGLLQSSHASLQGKEAQLLADLAAADKRKGGVEEEARVLRDRVSQLETGQRAALESFKEWQVASATLLSSVELHLQVPLQCFRPSPSSPITQVQQHPQAPTQLSAAGSPCEAEGEAGEGGREREGVQKRRRGGRGLDLINEEGEMEGEEEESAVIMEDGREGNNVEEARRNSAGTFAVECESKRQKVYEGRRAFDPESDGEENEETLQGKEKK 576
The following BLAST results are available for this feature:
BLAST of EWM30652.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585113346|gb|EWM30652.1|0.000e+0100.00serine-threonine protein kinase-like protein [Nann... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna19rna19Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications