EWM28809.1, cds1880 (CDS) Nannochloropsis gaditana

Overview
NameEWM28809.1
Unique Namecds1880
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:386503..387075 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28809.1
ProductProtein of unknown function DUF1749
Orig transcript idgnl|cribi|Naga_100002g138.4928.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:386503..387075 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR013744DUF1749
Homology
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|585111232|gb|EWM28809.1| (Protein of unknown function DUF1749 [Nannochloropsis gaditana])

HSP 1 Score: 390.578 bits (1002), Expect = 1.745e-137
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MGSLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHLDIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGACPLPRAATVVGARHSGRGHEEVITLTILAFLDEVDNLIC 190
            MGSLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHLDIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGACPLPRAATVVGARHSGRGHEEVITLTILAFLDEVDNLIC
Sbjct:    1 MGSLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHLDIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGACPLPRAATVVGARHSGRGHEEVITLTILAFLDEVDNLIC 190          
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|1210512427|dbj|GAX28541.1| (hypothetical protein FisN_12Hh091 [Fistulifera solaris])

HSP 1 Score: 129.798 bits (325), Expect = 2.494e-33
Identity = 81/206 (39.32%), Postives = 111/206 (53.88%), Query Frame = 0
Query:    5 AVGLVGHSTGTQDSVYYVKTCEDPSKKP-AFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-------------DIPTLFL-----LSGADEYVPLGVNVQTLGERFVKAC--AGACPLPRAATVVGARHSGRGHEEVITLTILAFLDEVDNLI 189
            +  LVGHSTG Q  V+Y+KT + P   P    VLQAPVSDREH       + F+ +A++MR QGK +EM+PR A WAPITA+R+LDL  + G DD+FSSD S  EL +RL H+             D+ +         SG+DEYVP  V+   L ER V A     + P+     +  + H+   HE   T     F++ +  L+
Sbjct:  108 SFALVGHSTGCQCIVHYLKTKQPPQSLPLRLAVLQAPVSDREHAAASSQYAYFLSIAQDMRQQGKLQEMMPRDAFWAPITAERYLDLQERGGKDDYFSSDYSPEELMERLQHVGLFGERQREDETSDLSSRRFRCCVAYSGSDEYVPDHVDKAGLTERLVDAMNHGTSSPVAHPLYLPHSNHNLSNHEPERT----KFMEHIVQLL 309          
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|219128369|ref|XP_002184387.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404188|gb|EEC44136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 127.872 bits (320), Expect = 1.902e-32
Identity = 73/156 (46.79%), Postives = 94/156 (60.26%), Query Frame = 0
Query:    8 LVGHSTGTQDSVYYVKTCE-DPSKKPAFIVLQAPVSDRE---HLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHLD-------IPTLFLLSGADEYVPLGVNVQTLGERFVKACAGAC 152
            LVGHSTG Q+ VY++K    D   +     LQAPVSDRE   HL LQ   ++ + LA  M+++G+ EEM+PR A WAPITA R+LDL  + G DDFFSSD +D ELR RL H+        +  L   SG DEY+P  ++ + L  R V A   AC
Sbjct:  132 LVGHSTGCQNIVYFLKHARRDLQDRIRVAALQAPVSDREGVPHLDLQ---ARNIDLALSMQSRGQAEEMMPRDAFWAPITAQRYLDLNARGGTDDFFSSDYTDEELRSRLAHVGSNRHGARLKVLVAYSGKDEYIPADLDTEELTTRLVDAMNDAC 284          
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|1210526285|dbj|GAX15203.1| (hypothetical protein FisN_12Lh091 [Fistulifera solaris])

HSP 1 Score: 125.176 bits (313), Expect = 1.262e-31
Identity = 74/181 (40.88%), Postives = 99/181 (54.70%), Query Frame = 0
Query:    8 LVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHLD--------------IPTLFLLSGADEYVPLGVNVQTLGERFVKAC--AGACPLPRAATVVGARHSGRGHEE 172
            L+GHSTG Q  V+Y+KT +   +     VLQAPVSDREH       + F+ LA++MR Q K +EM+PR A WAPITA+R+LDL  + G DD+FSSD S  EL +RL H+                      SGADEYVP  V+   L +R V A     + P+     +  + H+   HE+
Sbjct:  111 LMGHSTGCQCIVHYLKTGKQSLR---LAVLQAPVSDREHAATSPQYAHFLSLAQDMRHQNKLQEMMPREAFWAPITAERYLDLHERGGKDDYFSSDYSAEELIERLQHVSAFGERTDDTSDSRRFQCCVAYSGADEYVPDHVDKAALTQRLVDAMNHGSSSPIAHPLYLPSSNHNLSNHEQ 288          
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|702329316|ref|XP_010054146.1| (PREDICTED: UPF0613 protein PB24D3.06c [Eucalyptus grandis] >gi|629113573|gb|KCW78533.1| hypothetical protein EUGRSUZ_D02658 [Eucalyptus grandis])

HSP 1 Score: 123.635 bits (309), Expect = 1.287e-30
Identity = 71/151 (47.02%), Postives = 94/151 (62.25%), Query Frame = 0
Query:    3 SLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAA-MWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-DIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGA 151
            S  V L+GHSTG QD V+Y++T    S+     +LQAPVSDRE+      T+  + LA  M  +G+G E++PR A   +PITA+RF  L    G DD FSSDL+D +LR RLGH+ + P   + S ADEYVP  V+ ++L ER  KA  GA
Sbjct:  166 SEGVVLLGHSTGCQDIVHYMRTNAACSRAVRGAILQAPVSDREYRATLPETAALIDLASTMIKEGRGSELMPREADEGSPITANRFYSLCAYMGEDDMFSSDLTDDQLRMRLGHMCNTPCQVIFSMADEYVPAYVDKKSLVERLCKALGGA 316          
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|470121800|ref|XP_004296946.1| (PREDICTED: UPF0613 protein PB24D3.06c [Fragaria vesca subsp. vesca])

HSP 1 Score: 122.479 bits (306), Expect = 3.140e-30
Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 0
Query:    3 SLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-DIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGA 151
            S  V L+GHSTG QD V+Y++T    S+     +LQAPVSDRE+      T+  + LA  M  +G+G E++P  A  APITA R+  L    G DD FSSDL+D +LR RLGH+ + P   + S ADEYVP  V+ + L +R  KA +GA
Sbjct:  150 SEGVVLIGHSTGCQDIVHYIRTNAACSRAVRAAILQAPVSDREYRATLPETAAMIDLASTMINEGRGSELMPSEADLAPITAYRYHSLCAYNGDDDMFSSDLTDDQLRLRLGHMSNTPCQVIYSMADEYVPDYVDKKALVQRLCKAMSGA 299          
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|802579529|ref|XP_012069519.1| (UPF0613 protein PB24D3.06c [Jatropha curcas] >gi|643733154|gb|KDP40101.1| hypothetical protein JCGZ_02099 [Jatropha curcas])

HSP 1 Score: 122.479 bits (306), Expect = 3.465e-30
Identity = 71/152 (46.71%), Postives = 94/152 (61.84%), Query Frame = 0
Query:    2 GSLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAA-MWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-DIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGA 151
             S  V L+GHSTG QD V+Y++T    S+     +LQAPVSDRE+      T+  + LA  M A+G+G E++PR A   +PITA R+  L +  G DD FSSDLSD +L+ RLGH+ + P   + S ADEYVP  V+ + L ER  KA  GA
Sbjct:  161 NSEGVVLLGHSTGCQDIVHYMRTSAACSRAVRAAILQAPVSDREYNATLPNTAAMIDLASSMIAEGRGSELMPREADPSSPITAYRYHSLCSYMGDDDMFSSDLSDDQLKTRLGHMCNTPCQVIFSMADEYVPDYVDKKALVERLCKAMGGA 312          
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|760441089|ref|XP_011397613.1| (UPF0613 protein PB24D3.06c [Auxenochlorella protothecoides] >gi|675352285|gb|KFM24725.1| UPF0613 protein PB24D3.06c [Auxenochlorella protothecoides])

HSP 1 Score: 120.939 bits (302), Expect = 3.857e-30
Identity = 78/187 (41.71%), Postives = 105/187 (56.15%), Query Frame = 0
Query:    2 GSLAVGLVGHSTGTQDSVYYVK---TCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWA--PITADRFLDLATKEGLDDFFSSDLSDGELRDRL-GHLDIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGACPLPRAATVVGARHSGRGHEEVITLTILAFL 182
            G+  V ++GHSTG QD+V Y       +D +     +VLQAPVSDRE L  Q++T+   Q A+ M  +G+GE++L RA      PITA RF+ LA   G DD FSSDLSD +LR+ L G   +P+LFLL   DE  P G +V+ LG R V A   +  L     V+   H  +G E  +   +  FL
Sbjct:   92 GAEGVAILGHSTGCQDAVRYASLYAGGKDGAPPLMGLVLQAPVSDREFLGKQQSTAALAQRAQRMVEEGRGEDLLGRADALGGTPITARRFVALACGGGDDDMFSSDLSDAQLRELLKGAASVPSLFLLGAQDECYPAGCDVEGLGRRLVAAAGSSAQL----KVLDGDHCLKGLENEVVEVVSDFL 274          
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|747050906|ref|XP_011071537.1| (UPF0613 protein PB24D3.06c [Sesamum indicum])

HSP 1 Score: 122.094 bits (305), Expect = 4.667e-30
Identity = 68/151 (45.03%), Postives = 94/151 (62.25%), Query Frame = 0
Query:    3 SLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMW-APITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-DIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGA 151
            S  V L+GHSTG QD V+Y++T    S+     +LQAPVSDRE+      T+  + LA +M  +G+G E++PR A   APITADR+  L    G DD FSSD ++ +LR +LGH+ + PTL + S ADE+VP  V+ + L  R  +A  GA
Sbjct:  161 SEGVVLLGHSTGCQDIVHYLRTNAACSRAVRAAILQAPVSDREYKATLPETASMIDLASKMITEGRGSELMPREANPDAPITADRYHSLCAYNGDDDMFSSDFNEDQLRQKLGHMSNTPTLVMFSMADEFVPEYVDKKALVNRLCRAMGGA 311          
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|1111038506|ref|XP_019226107.1| (PREDICTED: UPF0613 protein PB24D3.06c isoform X2 [Nicotiana attenuata])

HSP 1 Score: 120.168 bits (300), Expect = 6.159e-30
Identity = 68/151 (45.03%), Postives = 91/151 (60.26%), Query Frame = 0
Query:    3 SLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMW-APITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-DIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGA 151
            S  V L+GHSTG QD VYY++T    S+     +LQAPVSDRE+      T+  + LA  M ++G+  E++PR A   APITA R+L L    G DD FSSD SD +L+ RLGH+ + P   + S  DEYVP  V+ + L +R  +A  GA
Sbjct:   89 SEGVVLLGHSTGCQDIVYYMRTNAACSRAVCAAILQAPVSDREYKATLSDTASMIDLASNMISEGRESELMPREANPDAPITAFRYLSLCAYNGEDDLFSSDFSDDQLKQRLGHMSNTPCQVIFSMGDEYVPDYVDKKALVDRLCRAMGGA 239          
The following BLAST results are available for this feature:
BLAST of EWM28809.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111232|gb|EWM28809.1|1.745e-137100.00Protein of unknown function DUF1749 [Nannochlorops... [more]
gi|1210512427|dbj|GAX28541.1|2.494e-3339.32hypothetical protein FisN_12Hh091 [Fistulifera sol... [more]
gi|219128369|ref|XP_002184387.1|1.902e-3246.79predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210526285|dbj|GAX15203.1|1.262e-3140.88hypothetical protein FisN_12Lh091 [Fistulifera sol... [more]
gi|702329316|ref|XP_010054146.1|1.287e-3047.02PREDICTED: UPF0613 protein PB24D3.06c [Eucalyptus ... [more]
gi|470121800|ref|XP_004296946.1|3.140e-3046.00PREDICTED: UPF0613 protein PB24D3.06c [Fragaria ve... [more]
gi|802579529|ref|XP_012069519.1|3.465e-3046.71UPF0613 protein PB24D3.06c [Jatropha curcas] >gi|6... [more]
gi|760441089|ref|XP_011397613.1|3.857e-3041.71UPF0613 protein PB24D3.06c [Auxenochlorella protot... [more]
gi|747050906|ref|XP_011071537.1|4.667e-3045.03UPF0613 protein PB24D3.06c [Sesamum indicum][more]
gi|1111038506|ref|XP_019226107.1|6.159e-3045.03PREDICTED: UPF0613 protein PB24D3.06c isoform X2 [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1885rna1885Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications