EWM28809.1, cds1880 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|585111232|gb|EWM28809.1| (Protein of unknown function DUF1749 [Nannochloropsis gaditana]) HSP 1 Score: 390.578 bits (1002), Expect = 1.745e-137 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query: 1 MGSLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHLDIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGACPLPRAATVVGARHSGRGHEEVITLTILAFLDEVDNLIC 190
MGSLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHLDIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGACPLPRAATVVGARHSGRGHEEVITLTILAFLDEVDNLIC
Sbjct: 1 MGSLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHLDIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGACPLPRAATVVGARHSGRGHEEVITLTILAFLDEVDNLIC 190
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|1210512427|dbj|GAX28541.1| (hypothetical protein FisN_12Hh091 [Fistulifera solaris]) HSP 1 Score: 129.798 bits (325), Expect = 2.494e-33 Identity = 81/206 (39.32%), Postives = 111/206 (53.88%), Query Frame = 0
Query: 5 AVGLVGHSTGTQDSVYYVKTCEDPSKKP-AFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-------------DIPTLFL-----LSGADEYVPLGVNVQTLGERFVKAC--AGACPLPRAATVVGARHSGRGHEEVITLTILAFLDEVDNLI 189
+ LVGHSTG Q V+Y+KT + P P VLQAPVSDREH + F+ +A++MR QGK +EM+PR A WAPITA+R+LDL + G DD+FSSD S EL +RL H+ D+ + SG+DEYVP V+ L ER V A + P+ + + H+ HE T F++ + L+
Sbjct: 108 SFALVGHSTGCQCIVHYLKTKQPPQSLPLRLAVLQAPVSDREHAAASSQYAYFLSIAQDMRQQGKLQEMMPRDAFWAPITAERYLDLQERGGKDDYFSSDYSPEELMERLQHVGLFGERQREDETSDLSSRRFRCCVAYSGSDEYVPDHVDKAGLTERLVDAMNHGTSSPVAHPLYLPHSNHNLSNHEPERT----KFMEHIVQLL 309
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|219128369|ref|XP_002184387.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404188|gb|EEC44136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 127.872 bits (320), Expect = 1.902e-32 Identity = 73/156 (46.79%), Postives = 94/156 (60.26%), Query Frame = 0
Query: 8 LVGHSTGTQDSVYYVKTCE-DPSKKPAFIVLQAPVSDRE---HLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHLD-------IPTLFLLSGADEYVPLGVNVQTLGERFVKACAGAC 152
LVGHSTG Q+ VY++K D + LQAPVSDRE HL LQ ++ + LA M+++G+ EEM+PR A WAPITA R+LDL + G DDFFSSD +D ELR RL H+ + L SG DEY+P ++ + L R V A AC
Sbjct: 132 LVGHSTGCQNIVYFLKHARRDLQDRIRVAALQAPVSDREGVPHLDLQ---ARNIDLALSMQSRGQAEEMMPRDAFWAPITAQRYLDLNARGGTDDFFSSDYTDEELRSRLAHVGSNRHGARLKVLVAYSGKDEYIPADLDTEELTTRLVDAMNDAC 284
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|1210526285|dbj|GAX15203.1| (hypothetical protein FisN_12Lh091 [Fistulifera solaris]) HSP 1 Score: 125.176 bits (313), Expect = 1.262e-31 Identity = 74/181 (40.88%), Postives = 99/181 (54.70%), Query Frame = 0
Query: 8 LVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHLD--------------IPTLFLLSGADEYVPLGVNVQTLGERFVKAC--AGACPLPRAATVVGARHSGRGHEE 172
L+GHSTG Q V+Y+KT + + VLQAPVSDREH + F+ LA++MR Q K +EM+PR A WAPITA+R+LDL + G DD+FSSD S EL +RL H+ SGADEYVP V+ L +R V A + P+ + + H+ HE+
Sbjct: 111 LMGHSTGCQCIVHYLKTGKQSLR---LAVLQAPVSDREHAATSPQYAHFLSLAQDMRHQNKLQEMMPREAFWAPITAERYLDLHERGGKDDYFSSDYSAEELIERLQHVSAFGERTDDTSDSRRFQCCVAYSGADEYVPDHVDKAALTQRLVDAMNHGSSSPIAHPLYLPSSNHNLSNHEQ 288
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|702329316|ref|XP_010054146.1| (PREDICTED: UPF0613 protein PB24D3.06c [Eucalyptus grandis] >gi|629113573|gb|KCW78533.1| hypothetical protein EUGRSUZ_D02658 [Eucalyptus grandis]) HSP 1 Score: 123.635 bits (309), Expect = 1.287e-30 Identity = 71/151 (47.02%), Postives = 94/151 (62.25%), Query Frame = 0
Query: 3 SLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAA-MWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-DIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGA 151
S V L+GHSTG QD V+Y++T S+ +LQAPVSDRE+ T+ + LA M +G+G E++PR A +PITA+RF L G DD FSSDL+D +LR RLGH+ + P + S ADEYVP V+ ++L ER KA GA
Sbjct: 166 SEGVVLLGHSTGCQDIVHYMRTNAACSRAVRGAILQAPVSDREYRATLPETAALIDLASTMIKEGRGSELMPREADEGSPITANRFYSLCAYMGEDDMFSSDLTDDQLRMRLGHMCNTPCQVIFSMADEYVPAYVDKKSLVERLCKALGGA 316
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|470121800|ref|XP_004296946.1| (PREDICTED: UPF0613 protein PB24D3.06c [Fragaria vesca subsp. vesca]) HSP 1 Score: 122.479 bits (306), Expect = 3.140e-30 Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 0
Query: 3 SLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-DIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGA 151
S V L+GHSTG QD V+Y++T S+ +LQAPVSDRE+ T+ + LA M +G+G E++P A APITA R+ L G DD FSSDL+D +LR RLGH+ + P + S ADEYVP V+ + L +R KA +GA
Sbjct: 150 SEGVVLIGHSTGCQDIVHYIRTNAACSRAVRAAILQAPVSDREYRATLPETAAMIDLASTMINEGRGSELMPSEADLAPITAYRYHSLCAYNGDDDMFSSDLTDDQLRLRLGHMSNTPCQVIYSMADEYVPDYVDKKALVQRLCKAMSGA 299
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|802579529|ref|XP_012069519.1| (UPF0613 protein PB24D3.06c [Jatropha curcas] >gi|643733154|gb|KDP40101.1| hypothetical protein JCGZ_02099 [Jatropha curcas]) HSP 1 Score: 122.479 bits (306), Expect = 3.465e-30 Identity = 71/152 (46.71%), Postives = 94/152 (61.84%), Query Frame = 0
Query: 2 GSLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAA-MWAPITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-DIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGA 151
S V L+GHSTG QD V+Y++T S+ +LQAPVSDRE+ T+ + LA M A+G+G E++PR A +PITA R+ L + G DD FSSDLSD +L+ RLGH+ + P + S ADEYVP V+ + L ER KA GA
Sbjct: 161 NSEGVVLLGHSTGCQDIVHYMRTSAACSRAVRAAILQAPVSDREYNATLPNTAAMIDLASSMIAEGRGSELMPREADPSSPITAYRYHSLCSYMGDDDMFSSDLSDDQLKTRLGHMCNTPCQVIFSMADEYVPDYVDKKALVERLCKAMGGA 312
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|760441089|ref|XP_011397613.1| (UPF0613 protein PB24D3.06c [Auxenochlorella protothecoides] >gi|675352285|gb|KFM24725.1| UPF0613 protein PB24D3.06c [Auxenochlorella protothecoides]) HSP 1 Score: 120.939 bits (302), Expect = 3.857e-30 Identity = 78/187 (41.71%), Postives = 105/187 (56.15%), Query Frame = 0
Query: 2 GSLAVGLVGHSTGTQDSVYYVK---TCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMWA--PITADRFLDLATKEGLDDFFSSDLSDGELRDRL-GHLDIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGACPLPRAATVVGARHSGRGHEEVITLTILAFL 182
G+ V ++GHSTG QD+V Y +D + +VLQAPVSDRE L Q++T+ Q A+ M +G+GE++L RA PITA RF+ LA G DD FSSDLSD +LR+ L G +P+LFLL DE P G +V+ LG R V A + L V+ H +G E + + FL
Sbjct: 92 GAEGVAILGHSTGCQDAVRYASLYAGGKDGAPPLMGLVLQAPVSDREFLGKQQSTAALAQRAQRMVEEGRGEDLLGRADALGGTPITARRFVALACGGGDDDMFSSDLSDAQLRELLKGAASVPSLFLLGAQDECYPAGCDVEGLGRRLVAAAGSSAQL----KVLDGDHCLKGLENEVVEVVSDFL 274
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|747050906|ref|XP_011071537.1| (UPF0613 protein PB24D3.06c [Sesamum indicum]) HSP 1 Score: 122.094 bits (305), Expect = 4.667e-30 Identity = 68/151 (45.03%), Postives = 94/151 (62.25%), Query Frame = 0
Query: 3 SLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMW-APITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-DIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGA 151
S V L+GHSTG QD V+Y++T S+ +LQAPVSDRE+ T+ + LA +M +G+G E++PR A APITADR+ L G DD FSSD ++ +LR +LGH+ + PTL + S ADE+VP V+ + L R +A GA
Sbjct: 161 SEGVVLLGHSTGCQDIVHYLRTNAACSRAVRAAILQAPVSDREYKATLPETASMIDLASKMITEGRGSELMPREANPDAPITADRYHSLCAYNGDDDMFSSDFNEDQLRQKLGHMSNTPTLVMFSMADEFVPEYVDKKALVNRLCRAMGGA 311
BLAST of EWM28809.1 vs. NCBI_GenBank
Match: gi|1111038506|ref|XP_019226107.1| (PREDICTED: UPF0613 protein PB24D3.06c isoform X2 [Nicotiana attenuata]) HSP 1 Score: 120.168 bits (300), Expect = 6.159e-30 Identity = 68/151 (45.03%), Postives = 91/151 (60.26%), Query Frame = 0
Query: 3 SLAVGLVGHSTGTQDSVYYVKTCEDPSKKPAFIVLQAPVSDREHLCLQETTSKFVQLAREMRAQGKGEEMLPRAAMW-APITADRFLDLATKEGLDDFFSSDLSDGELRDRLGHL-DIPTLFLLSGADEYVPLGVNVQTLGERFVKACAGA 151
S V L+GHSTG QD VYY++T S+ +LQAPVSDRE+ T+ + LA M ++G+ E++PR A APITA R+L L G DD FSSD SD +L+ RLGH+ + P + S DEYVP V+ + L +R +A GA
Sbjct: 89 SEGVVLLGHSTGCQDIVYYMRTNAACSRAVCAAILQAPVSDREYKATLSDTASMIDLASNMISEGRESELMPREANPDAPITAFRYLSLCAYNGEDDLFSSDFSDDQLKQRLGHMSNTPCQVIFSMGDEYVPDYVDKKALVDRLCRAMGGA 239 The following BLAST results are available for this feature:
BLAST of EWM28809.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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