EWM28725.1, cds1860 (CDS) Nannochloropsis gaditana

Overview
NameEWM28725.1
Unique Namecds1860
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:321780..321932 +
Alignment locationCM002458.1:322054..323118 +
Alignment locationCM002458.1:323371..323627 +
Alignment locationCM002458.1:323842..323932 +
Alignment locationCM002458.1:324079..324312 +
Alignment locationCM002458.1:324451..324589 +
Alignment locationCM002458.1:324845..325569 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28725.1
ProductPsbB mRNA maturation factor
Orig transcript idgnl|cribi|Naga_100002g160.4844.mrna
GeneMbb1
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:321780..321932 +
CM002458.1supercontigCM002458.1:322054..323118 +
CM002458.1supercontigCM002458.1:323371..323627 +
CM002458.1supercontigCM002458.1:323842..323932 +
CM002458.1supercontigCM002458.1:324079..324312 +
CM002458.1supercontigCM002458.1:324451..324589 +
CM002458.1supercontigCM002458.1:324845..325569 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR013105TPR_2
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
IPR003107HAT
Homology
BLAST of EWM28725.1 vs. NCBI_GenBank
Match: gi|585111148|gb|EWM28725.1| (PsbB mRNA maturation factor [Nannochloropsis gaditana])

HSP 1 Score: 1819.28 bits (4711), Expect = 0.000e+0
Identity = 887/887 (100.00%), Postives = 887/887 (100.00%), Query Frame = 0
Query:    1 MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVMERRFGHVEHAMRIEQRRHLAFGGKSGGGPHGGGGGTRDAKQGGRGVEGYDKGSRMMGLFDSFQEVYALPRGTMEEEKGRGRIWGPLGGKDRAKRSVGWRADGQSKGREADEEQEEAEHSREQPQRGRIGGSATGVFPPPSPRRSREDAPVFDTFLEGGFTREGETGQLHGNVTLGIA 887
            MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVMERRFGHVEHAMRIEQRRHLAFGGKSGGGPHGGGGGTRDAKQGGRGVEGYDKGSRMMGLFDSFQEVYALPRGTMEEEKGRGRIWGPLGGKDRAKRSVGWRADGQSKGREADEEQEEAEHSREQPQRGRIGGSATGVFPPPSPRRSREDAPVFDTFLEGGFTREGETGQLHGNVTLGIA
Sbjct:    1 MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVMERRFGHVEHAMRIEQRRHLAFGGKSGGGPHGGGGGTRDAKQGGRGVEGYDKGSRMMGLFDSFQEVYALPRGTMEEEKGRGRIWGPLGGKDRAKRSVGWRADGQSKGREADEEQEEAEHSREQPQRGRIGGSATGVFPPPSPRRSREDAPVFDTFLEGGFTREGETGQLHGNVTLGIA 887          
BLAST of EWM28725.1 vs. NCBI_GenBank
Match: gi|585111149|gb|EWM28726.1| (PsbB mRNA maturation factor [Nannochloropsis gaditana])

HSP 1 Score: 1330.08 bits (3441), Expect = 0.000e+0
Identity = 647/647 (100.00%), Postives = 647/647 (100.00%), Query Frame = 0
Query:    1 MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSG 647
            MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSG
Sbjct:    1 MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSG 647          

HSP 2 Score: 90.1225 bits (222), Expect = 7.214e-15
Identity = 71/255 (27.84%), Postives = 115/255 (45.10%), Query Frame = 0
Query:  472 REGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVMERRFGHVEHAMRIEQR 726
            R+ N   A ++ ++  E++  +   +   A +E    N   A  +Y+ AL+   ++    QA+   ++  GN   A  LF + I   P    A+   A  L E G    A   FQ  +Q +P +  L+ A+G+     G    AR +  + T+ NPR     + WHAWAVME++  N +LA   ++ AL+    S  T  A A LE+  GN E    L+   +  RP     +  Y +  +  G +  AM I Q+
Sbjct:  336 RKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNS---FCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQK 587          
BLAST of EWM28725.1 vs. NCBI_GenBank
Match: gi|298707953|emb|CBJ30324.1| (PsbB mRNA maturation factor Mbb1 [Ectocarpus siliculosus])

HSP 1 Score: 328.946 bits (842), Expect = 8.935e-96
Identity = 188/504 (37.30%), Postives = 277/504 (54.96%), Query Frame = 0
Query:  279 AEAETASNSLEILSKAVNERMLEEKFDNVRAP-------------YREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVMERRFGHVEHAMRIEQRRHLA-FGGKSGGGPHGGGGGTRDAKQGGRGVEGYDKGSRMMGL 768
            A +  ASN  E LS  V   + EE    V  P               + R  +PL   LDLL+Y AK+   K N  EA R+Y+ C+ELD  DGR ++GLAR   +      AQ ++E  L  CADNP++LQA+ V +++ GN  KA+ L + ++R  P+H+A+W+    L     R  EARG FQTA +++P N   W  W + E+R G+  VAR+  +   ++NPRN+  + AW V+E    ++ LA +L++  L+  P++++  QAWA +E  +GN + A SLF+  I KRP DG  +Q YAL LK+ G++  A  +F KG  + P HCP +QA+GML  ELG+   AR +F+ G   NP+G +V  I  AW ++E   GN++ AR+YF  AL R   S+P +VA A +EE  G++   R+L+E     + +    W  YE +E R G  E A+ + QR  +A   GK    P   G    D     RG    D+ SR + +
Sbjct:  287 AGSAAASNKTE-LSAKVEAELFEEYDAMVPGPAASAVGNNAGGDGAGQERTGRPLKINLDLLSYQAKQKNMKGNYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTATRNDPRNHYAWLVWAMLEKRIGSIDVAREKFKMCLKVNPRNAKVYQAWGVLEASEGSIALATELFRAGLEQRPDNTYIMQAWALMEAKQGNTDAAISLFKEAILKRPRDGAVWQAYALLLKDMGDVAGARALFSKGTTQSPKHCPTWQAWGMLEWELGQISRARKLFQEGVWGNPKGPYVVRILQAWGILEATQGNWDDARKYFGFALARDPYSLPVMVAWALMEEYVGDIGRARQLFEIATTTQADNADIWNVYEQVEMRAGFPEEAVAVYQRGVVAVMAGKKEPPPKERGPSLLDPAT-ARGPSLLDEASRSLSM 788          
BLAST of EWM28725.1 vs. NCBI_GenBank
Match: gi|551664101|ref|XP_005834814.1| (hypothetical protein GUITHDRAFT_162599 [Guillardia theta CCMP2712] >gi|428178961|gb|EKX47834.1| hypothetical protein GUITHDRAFT_162599 [Guillardia theta CCMP2712])

HSP 1 Score: 280.796 bits (717), Expect = 1.002e-76
Identity = 153/443 (34.54%), Postives = 238/443 (53.72%), Query Frame = 0
Query:  291 LSKAVNERMLEEKFDNVRAPYREPREP-KPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVMERR-FGH-VEHAMRIEQRRHLA 730
            LS+ V   +L+     +    R+   P K L   LDL++Y A+ AL+++   ++  +Y++C+++D YDGRA++GLA++   +     A+ + +  L+    +PF+LQA G  +Q+ G + +A++LF  A+     H+A+W+   +L   + R   AR  +  A    P +   W    V E REGN   AR L +K T++NP N+  W AW  ME+   N+D A +L Q  LKA P ++   QA A +E +RGN E A  L    I   P DGG YQ YA+ L   G+   A E+F++G  E   H  L+QA+ +   E      ARSIF++G       + ++ +W AW +ME   GN + AR+YF +A++   R  P+L A A++EE  GN+   REL E+ L I P  E  W   +   +R +G   E A  + QRR +A
Sbjct:  561 LSEKVKGTLLDSLAPFIDGSERDSVAPSKVLKINLDLMSYAARRALQRKEFDKSEDLYRKCLQMDAYDGRAWVGLAKLYEEKNQMFKAKEILQSGLQKLPRSPFLLQALGCIEQKQGQVVEALKLFQRAVEEDETHAASWVSLGKLEERMKRSWRARQCYAKAASVEPNSFYAWQCLAVLEAREGNLRAARSLFQKCTDVNPMNAASWQAWGTMERRAGNLDKAAELLQKGLKASPKNTFVLQALANIECERGNTEKAIELLERAIEINPKDGGVYQAYAMLLARSGKRMQAREMFKRGCSEAKKHAALWQAWAVHELERKNVKEARSIFQQGVWEAGSDKKIFVLWQAWGLMEASEGNLDEARKYFARAVDVADRPSPSLAAWAKVEEEAGNLIESRELLEKALAIEPSNEYAWDGLQAFVKRVYGEGSEEAKEVYQRRIVA 1003          
BLAST of EWM28725.1 vs. NCBI_GenBank
Match: gi|546323723|ref|XP_005718161.1| (TPR repeat-containing protein [Chondrus crispus] >gi|507114747|emb|CDF38276.1| TPR repeat-containing protein [Chondrus crispus])

HSP 1 Score: 241.121 bits (614), Expect = 6.913e-65
Identity = 159/516 (30.81%), Postives = 255/516 (49.42%), Query Frame = 0
Query:  314 PREPKPLPYQLDLLTYYAK-EALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKRE---ARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVMERRFGHVEHAMRIEQRRHLA--------FGGKSGGGPHGGGGGTRDAKQGGRGVEGYDKGSRMMGLFDSFQEVYALPRGTMEEEKGRGRIWGPLGGKDRAKRSVGWRADGQSKGR 817
            P    PLP QLDLL Y+A+  + R+     A R+Y+RC++++  DGRA++GLA++     +   A+  +   +     N  +LQA+GV ++R G + +A   ++AA+R  P+H+ +W+     LW    + +   AR  F+  ++++P N  +WH  GV E+    F VAR+  R+    NP N+  +  W  +E  L N  +A +L+Q A  A P ++H Y + A   +  G+   A SL  + I  RP D    Q   L     GE+  A   F+  L+ D  H P + A+  + + LG  + AR +++      P  +HV   WHAWA +E + GN  +ARRYF   LE  S+SVP L  LA +E MEGN+   RE +E  + ++P A+  W  YE +ER +G  + A  + +R  +           GK   G +  GG   DA +    V  +D     +G  D+ Q  +  P G   +E  +           ++K +V  R+  +  GR
Sbjct:  146 PLHLTPLPVQLDLLNYHARVASRRRNTRARARRLYRRCVDINSADGRAWLGLAKLHLAEGDVANARKTFRGGVNSSRKNSHLLQAWGVLEEREGFVDRAKGFYEAAVRANPQHTPSWVALG--LWYRRVRNDVVHAREMFRNGIEADPTNYYVWHVLGVLEKDCLQFPVARECFRRGVAANPNNAATYVLWGSLEDSLGNFAVAFELFQKAHVANPRNAHAYVSHAVCAERSGDVGKAISLLETAIEVRPNDPAPRQTLGLVHFRSGEVEQARAQFKAALRIDDKHGPTWHAWARVESALGLFERARELYQEAVWAAPESKHVVKTWHAWASLELEEGNCRVARRYFAHGLEVDSKSVPLLEGLATVEAMEGNMMQAREYFETCIRLQPSAKATWRLYEDLEREYGSAKRAQLVYERFVVTSKQVDERLVVGKPLPGDYAAGGMWIDALELKPTVSAFDS----VGNIDTDQVPFIKPFGREGDEVEKSSEEDASSPAIQSKVTVSRRSTAKKHGR 655          
BLAST of EWM28725.1 vs. NCBI_GenBank
Match: gi|1210526208|dbj|GAX15126.1| (hypothetical protein FisN_12Lh178 [Fistulifera solaris])

HSP 1 Score: 237.269 bits (604), Expect = 5.460e-63
Identity = 154/448 (34.38%), Postives = 232/448 (51.79%), Query Frame = 0
Query:  311 YRE-PREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCAD----------NPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQL-LWELGRKREA-RGYFQTA-----VQSNPENEVLWHAWGVAE-RREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDR--GNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERG-------TQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVL----LIRPEAEIYWTQYEVMERRFGHVEHAMRIEQR 726
            YRE  R    LP   D L Y AK+ ++K  V EA  +Y+R +E+D  DGRAY+GL+R   RR++   A+      +   A           NPF+LQA G  +++ G L +A  L+ +A+R  P H+A W+  AQ+   +LG+   A R  F+ A         P++  ++ AW   E ++ G+   A+KLL+ A EI+P+ S  W    ++E +L+N D A + ++N L     +S   QA+A +E  R  GN   A  LF   +   P D G  Q Y L + + G++ +A E+  KG + D  H P++QA G+L    G  + ARSIF++G       T     G +   +W AW V+E + GN   ARR F +AL+  SR+VP + A + +EE  GN +  R +YER L          +  W  YE+ME+R G    A R+ QR
Sbjct:  251 YREGVRLGNALPINADRLNYMAKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQALGCLEEKAGQLSQAESLYTSAVRSRPSHAAGWVALAQIRTRKLGQSVGAGRSCFEAAERELKASGLPQSSHVYTAWADLELKKAGDARRAKKLLKMALEIDPKCSVGWLQLGMLESDLQNWDKAEECFENVLTFDQRNSRVLQAYAIMETKRPDGNSRKAIGLFERALKANPRDAGVLQAYGLYVAKLGDIKSARELLWKGTEVDKRHAPIWQALGVLETRSGNPEEARSIFQQGIWACAQLTGCKSGGHNCARLWQAWGVLEAEEGNHAAARRCFNRALDADSRNVPAITAWSSMEEKLGNRQDARAIYERALPRFSAGSESKKALWRNYELMEQRAGDTAAAQRVYQR 698          
BLAST of EWM28725.1 vs. NCBI_GenBank
Match: gi|1210517350|dbj|GAX23607.1| (hypothetical protein FisN_12Hh178 [Fistulifera solaris])

HSP 1 Score: 233.802 bits (595), Expect = 1.083e-61
Identity = 167/535 (31.21%), Postives = 263/535 (49.16%), Query Frame = 0
Query:  242 VRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVR------------------APYRE-PREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCAD----------NPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQL-LWELGRKREA-RGYFQTA-----VQSNPENEVLWHAWGVAE-RREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDR--GNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERG-------TQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVL----LIRPEAEIYWTQYEVMERRFGHVEHAMRIEQR 726
            +R+ + E  +   E +  A   L    + A  + +KIA A +A      + +++  RM+E++    R                    YRE  R    LP   D L Y AK+ ++K  V EA  +Y+R +E+D  DGRAY+GL+R   RR++   A+      +   A           NPF+LQA G  +++ G L +A  L+ +A+R  P H+A W+  AQ+   +LG+   A R  F+ A         P++  ++ AW   E ++ G+   A+KLL+ A EI+P+ S  W    ++E +L+N D A + ++N L     +S   QA+A +E  R  GN   A  LF   +   P D G  Q Y L + + G++ +A E+  +G + D  H P++QA G+L    G  + AR+IF++G       T     G +   +W AW V+E + GN   ARR F +AL+  SR+VP + A + +EE  GN +  R +YER L          +  W  YE+ME+R G    A R+ QR
Sbjct:  170 LRLMWSEPTIKTRETSSSALTSLANETATAALISSKIANATSAR-----IDRSLT-RMVEDRIYGFRRGASGDIRYQTSLMGDGAVQYREGVRLGNALPINADRLNYMAKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQALGCLEEKAGQLSQAESLYASAVRSRPSHAAGWVALAQIRTRKLGQSVGAGRSCFEAAERELKASGLPQSSHVYTAWADLELKKAGDPRRAKKLLKLALEIDPKCSVGWLQLGMLESDLQNWDKAEECFENVLTFDQRNSRVLQAYAIMETKRPDGNSRKAIGLFERALKANPRDAGVLQAYGLYVAKLGDIKSARELLWRGTEVDKRHAPIWQALGVLETRSGNPEEARNIFQQGIWSCAQLTGCKSGGHNCARLWQAWGVLEAEEGNHAAARRCFNRALDADSRNVPAITAWSSMEEKLGNRQDARAIYERALPRFSAGSESKKALWRNYELMEQRAGDTAAAQRVYQR 698          
BLAST of EWM28725.1 vs. NCBI_GenBank
Match: gi|219111917|ref|XP_002177710.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410595|gb|EEC50524.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 228.794 bits (582), Expect = 5.552e-59
Identity = 154/446 (34.53%), Postives = 228/446 (51.12%), Query Frame = 0
Query:  315 REPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQ-----------AVYEEALRWCAD---NPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQL-LWELGRKREA-RGYFQTAVQ-----SNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDR--GNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERG-------TQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRP----EAEIYWTQYEVMERRFGHVEHAMRIEQR 726
            R   PL    D L Y AK+ L+   V EA  +Y   +++D  DGRAY+G++R   RRR+   A+           +V E  ++  AD   NPF+LQA G  ++ +G L +A  L+ AA +  P H+AAW+   QL + +LG+   A R  FQ+A +     S P +  ++ AW   E    +   AR+L + A +++PR+S  W    VME + EN + A   ++ ALK    +S   QA+A +E  R  GN   A  L    +   P D G  Q YAL + E G++ AA ++ ++G + +  H P++QA+ +L    G    ARSIF+ G       T     G     +W AW V+E + G+   ARR F +AL+  SR+V  + A A +EE  GNV   R +YER L +      E    W  YE+ME+R GHV  A  + QR
Sbjct:  443 RLSNPLRVNADRLNYLAKKELQHGRVEEAQELYTIALQIDPRDGRAYLGMSRCASRRRDFKLAKVWLQTGISNAVSVNENTMQ--ADRGANPFLLQALGCLEENSGRLSEAEALYIAAAKSRPTHAAAWVSLGQLRIRKLGQSANAGRVCFQSAEREWQRASLPPSAHVYTAWAALECEANDIRRARQLYKAALDVDPRSSVAWLQLGVMEADEENWNEAETCFETALKFDRRNSRLLQAYALMETKRPNGNSRKAIGLLERALKANPRDAGVLQAYALYVAELGDVDAARDLLRRGAEANKRHAPVWQAWAVLETRHGNVQEARSIFQEGIWACAQLTGGQSGGYRCARLWQAWGVLEAREGDAAAARRCFSRALDADSRNVAAVTAWALMEEEFGNVRDARAIYERSLRLFAAGSGEKTSIWRNYELMEQRLGHVAAAQNVYQR 886          
BLAST of EWM28725.1 vs. NCBI_GenBank
Match: gi|566190982|ref|XP_002316041.2| (hypothetical protein POPTR_0010s15510g [Populus trichocarpa] >gi|550329874|gb|EEF02212.2| hypothetical protein POPTR_0010s15510g [Populus trichocarpa])

HSP 1 Score: 211.075 bits (536), Expect = 1.810e-54
Identity = 143/474 (30.17%), Postives = 228/474 (48.10%), Query Frame = 0
Query:  314 PREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWC-ADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEA--EIYWTQ--YEVMERRFGHVEHAMRIEQR---------RHLAFGGKSGGGPHGGGGGTRDAKQGGRGVEGYDKGSRMMGL-FDSF 772
            P+E KPL   LDL  Y AK   R+    EA  I Q+C+     DG+ Y+ L RI G++    AA+AVYE+  +    +NP+V Q + V + + GN+R+A ELFDAA     +H AAW G A L  + G  ++AR      ++    NE ++    + E +   +  A+ L R+AT+ NP++   W AWA +E + EN  +A  L++ A++A P +   +  W   E + GN E A  L   G A  P D    Q  AL          A  +F+K  + DP H P++ A+G +  + G    AR ++++    N           AW V+E+++GN   ARR FR +L   S+S  T +  AQLE+ +GN     E+       R E   ++ W     ++++     ++  + ++Q          R+++ G + G   +  G  + ++        G DK  R  GL  DSF
Sbjct:  149 PQE-KPLVVNLDLALYKAKVLARRFKYKEAEEILQKCISYWPEDGKPYVALGRILGKQSKSEAARAVYEKGCQATQGENPYVWQCWAVLENKMGNIRRARELFDAATVADKRHVAAWHGWAILELKQGNVKKARQLLAKGLKFCGGNEYVYQTLALLEAKANRYKQAQYLFRQATKCNPKSCASWLAWAQLETQQENNLVARKLFEKAVQASPKNRFAWHVWGVFEANIGNIEKARKLLTIGHALNPRDAVLLQSLALLEYRHSTANLARVLFRKASELDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINTTTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWAQLEDDQGNSVRAEEIRNLYFQQRTEVVDDVPWVAGFLDILDPAVDSIKKLLNMDQDPYKKAQEALRNISRGKEKGVDDNSAGNPSSNS-------FGNDKEGRGSGLDLDSF 614          
BLAST of EWM28725.1 vs. NCBI_GenBank
Match: gi|971514849|dbj|GAQ83365.1| (psbB mRNA maturation factor Mbb1 [Klebsormidium nitens])

HSP 1 Score: 213.772 bits (543), Expect = 5.908e-54
Identity = 135/397 (34.01%), Postives = 204/397 (51.39%), Query Frame = 0
Query:  317 PKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWC-ADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNP-RGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVME 711
            PK L   LDL  Y A+  + KR   +A  I+ +C++    DGRAY  LA++  RR     A+ +YE A      +N +V Q Y V ++R GNL KA +LFDAA+    +H+AAW G  +L    G   +A+  F   +++ P N  L     + E+  GN   AR+   K T   PR++  W AWA++E E  N   A +L+Q A +  P S   Y AWA  E + G  + A  LF +G+A RP D    Q +A  L + G++  A  +F++    DP H P +QA+ ++  + G    AR +F++G    P     V  ++ AW V+EE+ GN  +AR  ++ AL+    SV T  + A LEE  GN+    EL  R L ++ + E+      + E
Sbjct:  531 PKKLKINLDLDLYRARNLVFKRQFTQAENIFYKCIKDFPEDGRAYCQLAKLLERRGELDTAREMYESAEAAAKGENAYVWQMYAVLEERAGNLSKARKLFDAALVVDKEHAAAWHGWGKLEKRDGNLVKAKSLFLRGLKNCPTNAYLHQELALIEKEAGNAAQAREYFEKGTGYAPRSAALWQAWALLEAECGNAAKARELFQKAKEVSPRSGPVYLAWALFEAECGETKAALELFETGLAYRPRDVVLMQAFARFLYDEGDLARARLLFRRATLLDPRHQPSWQAWAIIEWKEGNVPKARELFQKGVWAAPGNNADVVKVFQAWGVLEERQGNLTVARELYKCALKADPTSVLTWESWALLEEHVGNIFRADEL--RRLCMQQQTEVVSVDLSLTE 925          

HSP 2 Score: 120.168 bits (300), Expect = 5.565e-24
Identity = 82/284 (28.87%), Postives = 128/284 (45.07%), Query Frame = 0
Query:  444 EARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKA-TEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVMERRFGHVEHAMRIEQR 726
            +A   F   ++  PE+   +        R G    AR++   A       N++ W  +AV+E+   N+  A  L+  AL      +  +  W  LEK  GN   A SLF  G+   P +   +Q  AL  KE G    A E F+KG    P    L+QA+ +L AE G    AR +F++  + +PR   VY    AWA+ E + G  + A   F   L  + R V  + A A+    EG++   R L+ R  L+ P  +  W  + ++E + G+V  A  + Q+
Sbjct:  556 QAENIFYKCIKDFPEDGRAYCQLAKLLERRGELDTAREMYESAEAAAKGENAYVWQMYAVLEERAGNLSKARKLFDAALVVDKEHAAAWHGWGKLEKRDGNLVKAKSLFLRGLKNCPTNAYLHQELALIEKEAGNAAQAREYFEKGTGYAPRSAALWQAWALLEAECGNAAKARELFQKAKEVSPRSGPVYL---AWALFEAECGETKAALELFETGLAYRPRDVVLMQAFARFLYDEGDLARARLLFRRATLLDPRHQPSWQAWAIIEWKEGNVPKARELFQK 836          
The following BLAST results are available for this feature:
BLAST of EWM28725.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111148|gb|EWM28725.1|0.000e+0100.00PsbB mRNA maturation factor [Nannochloropsis gadit... [more]
gi|585111149|gb|EWM28726.1|7.214e-15100.00PsbB mRNA maturation factor [Nannochloropsis gadit... [more]
gi|298707953|emb|CBJ30324.1|8.935e-9637.30PsbB mRNA maturation factor Mbb1 [Ectocarpus silic... [more]
gi|551664101|ref|XP_005834814.1|1.002e-7634.54hypothetical protein GUITHDRAFT_162599 [Guillardia... [more]
gi|546323723|ref|XP_005718161.1|6.913e-6530.81TPR repeat-containing protein [Chondrus crispus] >... [more]
gi|1210526208|dbj|GAX15126.1|5.460e-6334.38hypothetical protein FisN_12Lh178 [Fistulifera sol... [more]
gi|1210517350|dbj|GAX23607.1|1.083e-6131.21hypothetical protein FisN_12Hh178 [Fistulifera sol... [more]
gi|219111917|ref|XP_002177710.1|5.552e-5934.53predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|566190982|ref|XP_002316041.2|1.810e-5430.17hypothetical protein POPTR_0010s15510g [Populus tr... [more]
gi|971514849|dbj|GAQ83365.1|5.908e-5434.01psbB mRNA maturation factor Mbb1 [Klebsormidium ni... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1865rna1865Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications