EWM28726.1, cds1859 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28726.1
Unique Name	cds1859
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002458.1:321780..321932 +
Alignment location	CM002458.1:322054..323118 +
Alignment location	CM002458.1:323371..323627 +
Alignment location	CM002458.1:323842..323932 +
Alignment location	CM002458.1:324079..324312 +
Alignment location	CM002458.1:324451..324786 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28726.1
Product	PsbB mRNA maturation factor
Orig transcript id	gnl\|cribi\|Naga_100002g160.4845.mrna
Gene	Mbb1
Gbkey	CDS
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:321780..321932 +
CM002458.1	supercontig	CM002458.1:322054..323118 +
CM002458.1	supercontig	CM002458.1:323371..323627 +
CM002458.1	supercontig	CM002458.1:323842..323932 +
CM002458.1	supercontig	CM002458.1:324079..324312 +
CM002458.1	supercontig	CM002458.1:324451..324786 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0006396	RNA processing

Vocabulary: **Cellular Component**
Term	Definition
GO:0009507	chloroplast
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR013105	TPR_2
IPR011990	TPR-like_helical_dom
IPR019734	TPR_repeat
IPR003107	HAT

Homology

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BLAST of EWM28726.1 vs. NCBI_GenBank
Match: gi|585111149|gb|EWM28726.1| (PsbB mRNA maturation factor [Nannochloropsis gaditana])

HSP 1 Score: 1463.74 bits (3788), Expect = 0.000e+0
Identity = 711/711 (100.00%), Postives = 711/711 (100.00%), Query Frame = 0

Query:    1 MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGESGLLLSSPYLSCIALGWWEEFHVPLLGRSFSGSLLFVEYKIEWHEQRGVSVRQGKDIADFLTG 711
            MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGESGLLLSSPYLSCIALGWWEEFHVPLLGRSFSGSLLFVEYKIEWHEQRGVSVRQGKDIADFLTG
Sbjct:    1 MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGESGLLLSSPYLSCIALGWWEEFHVPLLGRSFSGSLLFVEYKIEWHEQRGVSVRQGKDIADFLTG 711

[Close]

BLAST of EWM28726.1 vs. NCBI_GenBank
Match: gi|585111148|gb|EWM28725.1| (PsbB mRNA maturation factor [Nannochloropsis gaditana])

HSP 1 Score: 1330.08 bits (3441), Expect = 0.000e+0
Identity = 647/647 (100.00%), Postives = 647/647 (100.00%), Query Frame = 0

Query:    1 MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSG 647
            MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSG
Sbjct:    1 MVESRRRRRPGSSVLVTTTTAVLLLHTSWTSAAPSSSSAPSPNTCLPPRPLHQGAFLSPRTPFRWGSKSRSNSDSTQTKPSEDAFCSTCNFMAASVSFSPTLVLPASRTDDVTSPHAAPADPPADFAPPISPPGTNLMKGGKGSIGNSKNSNARSKGPKPGLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAEEVEGSVGETGWGNQDEDEGAGTVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSG 647

HSP 2 Score: 91.2781 bits (225), Expect = 3.053e-15
Identity = 71/255 (27.84%), Postives = 115/255 (45.10%), Query Frame = 0

Query:  336 RKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNS---FCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQK 587
            R+ N   A ++ ++  E++  +   +   A +E    N   A  +Y+ AL+   ++    QA+   ++  GN   A  LF + I   P    A+   A  L E G    A   FQ  +Q +P +  L+ A+G+     G    AR +  + T+ NPR     + WHAWAVME++  N +LA   ++ AL+    S  T  A A LE+  GN E    L+   +  RP     +  Y +  +  G +  AM I Q+
Sbjct:  472 REGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVMERRFGHVEHAMRIEQR 726

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BLAST of EWM28726.1 vs. NCBI_GenBank
Match: gi|298707953|emb|CBJ30324.1| (PsbB mRNA maturation factor Mbb1 [Ectocarpus siliculosus])

HSP 1 Score: 277.33 bits (708), Expect = 2.496e-78
Identity = 148/382 (38.74%), Postives = 218/382 (57.07%), Query Frame = 0

Query:  279 AEAETASNSLEILSKAVNERMLEEKFDNVRAP-------------YREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSG 647
            A +  ASN  E LS  V   + EE    V  P               + R  +PL   LDLL+Y AK+   K N  EA R+Y+ C+ELD  DGR ++GLAR   +      AQ ++E  L  CADNP++LQA+ V +++ GN  KA+ L + ++R  P+H+A+W+    L     R  EARG FQTA +++P N   W  W + E+R G+  VAR+  +   ++NPRN+  + AW V+E    ++ LA +L++  L+  P++++  QAWA +E  +GN + A SLF+  I KRP DG  +Q YAL LK+ G++  A  +F KG  + P HCP +QA+GML  ELG+   AR +F+ G   NP+G +V  I  AW ++E   G
Sbjct:  287 AGSAAASNKTE-LSAKVEAELFEEYDAMVPGPAASAVGNNAGGDGAGQERTGRPLKINLDLLSYQAKQKNMKGNYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTATRNDPRNHYAWLVWAMLEKRIGSIDVAREKFKMCLKVNPRNAKVYQAWGVLEASEGSIALATELFRAGLEQRPDNTYIMQAWALMEAKQGNTDAAISLFKEAILKRPRDGAVWQAYALLLKDMGDVAGARALFSKGTTQSPKHCPTWQAWGMLEWELGQISRARKLFQEGVWGNPKGPYVVRILQAWGILEATQG 667

HSP 2 Score: 101.293 bits (251), Expect = 1.845e-18
Identity = 70/291 (24.05%), Postives = 130/291 (44.67%), Query Frame = 0

Query:  336 RKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTY---QAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGT 623
            R + + EA   +Q     D  +  A++  A +E R  +   A+  ++  L+    N  V QA+GV +   G++  A ELF A +   P ++      A +  + G    A   F+ A+   P +  +W A+ +  +  G+   AR L  K T  +P++   W AW ++E EL  +  A  L+Q  +   P   +     QAW  LE  +GNW+ A   F   +A+ P+       +AL  +  G++  A ++F+        +  ++  +  +    G  + A ++++RG 
Sbjct:  458 RNKRIDEARGCFQTATRNDPRNHYAWLVWAMLEKRIGSIDVAREKFKMCLKVNPRNAKVYQAWGVLEASEGSIALATELFRAGLEQRPDNTYIMQAWALMEAKQGNTDAAISLFKEAILKRPRDGAVWQAYALLLKDMGDVAGARALFSKGTTQSPKHCPTWQAWGMLEWELGQISRARKLFQEGVWGNPKGPYVVRILQAWGILEATQGNWDDARKYFGFALARDPYSLPVMVAWALMEEYVGDIGRARQLFEIATTTQADNADIWNVYEQVEMRAGFPEEAVAVYQRGV 748

HSP 3 Score: 93.9745 bits (232), Expect = 3.615e-16
Identity = 72/298 (24.16%), Postives = 127/298 (42.62%), Query Frame = 0

Query:  295 VNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFC---WHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGL 589
            +NER   ++ D  R  ++      P  +   L+  +A    R  ++  A   ++ C++++  + + Y     +E    +   A  ++   L    DN +++QA+ + + + GN   A+ LF  AI   P+  A W   A LL ++G    AR  F      +P++   W AWG+ E   G    ARKL ++    NP+  +      AW ++E    N D A   +  AL   P S     AWA +E+  G+   A  LF      +  +   +  Y       G    A+ ++Q+G+
Sbjct:  455 LNER--NKRIDEARGCFQTATRNDPRNHYAWLV--WAMLEKRIGSIDVAREKFKMCLKVNPRNAKVYQAWGVLEASEGSIALATELFRAGLEQRPDNTYIMQAWALMEAKQGNTDAAISLFKEAILKRPRDGAVWQAYALLLKDMGDVAGARALFSKGTTQSPKHCPTWQAWGMLEWELGQISRARKLFQEGVWGNPKGPYVVRILQAWGILEATQGNWDDARKYFGFALARDPYSLPVMVAWALMEEYVGDIGRARQLFEIATTTQADNADIWNVYEQVEMRAGFPEEAVAVYQRGV 748

HSP 4 Score: 92.0485 bits (227), Expect = 1.656e-15
Identity = 64/255 (25.10%), Postives = 113/255 (44.31%), Query Frame = 0

Query:  402 QQRN--GNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGESGLLLS 654
            +Q+N  GN R+A  L+   +   P+    WLG A+ + ++ +  +A+  F+  +++  +N  L  A+ V E + GN   A  LL ++  ++P ++  W A  ++ +  + +D A   +Q A +  P + + +  WA LEK                                    G +  A E F+  L+ +P +  +YQA+G+L A  G    A  +F  G +  P      YI  AWA+ME K G +   +S
Sbjct:  352 KQKNMKGNYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTATRNDPRNHYAWLVWAMLEK----------------------------------RIGSIDVAREKFKMCLKVNPRNAKVYQAWGVLEASEGSIALATELFRAGLEQRPDN---TYIMQAWALMEAKQGNTDAAIS 569

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BLAST of EWM28726.1 vs. NCBI_GenBank
Match: gi|551664101|ref|XP_005834814.1| (hypothetical protein GUITHDRAFT_162599 [Guillardia theta CCMP2712] >gi|428178961|gb|EKX47834.1| hypothetical protein GUITHDRAFT_162599 [Guillardia theta CCMP2712])

HSP 1 Score: 232.261 bits (591), Expect = 4.704e-61
Identity = 121/358 (33.80%), Postives = 191/358 (53.35%), Query Frame = 0

Query:  291 LSKAVNERMLEEKFDNVRAPYREPREP-KPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSG 647
            LS+ V   +L+     +    R+   P K L   LDL++Y A+ AL+++   ++  +Y++C+++D YDGRA++GLA++   +     A+ + +  L+    +PF+LQA G  +Q+ G + +A++LF  A+     H+A+W+   +L   + R   AR  +  A    P +   W    V E REGN   AR L +K T++NP N+  W AW  ME+   N+D A +L Q  LKA P ++   QA A +E +RGN E A  L    I   P DGG YQ YA+ L   G+   A E+F++G  E   H  L+QA+ +   E      ARSIF++G       + ++ +W AW +ME   G
Sbjct:  561 LSEKVKGTLLDSLAPFIDGSERDSVAPSKVLKINLDLMSYAARRALQRKEFDKSEDLYRKCLQMDAYDGRAWVGLAKLYEEKNQMFKAKEILQSGLQKLPRSPFLLQALGCIEQKQGQVVEALKLFQRAVEEDETHAASWVSLGKLEERMKRSWRARQCYAKAASVEPNSFYAWQCLAVLEAREGNLRAARSLFQKCTDVNPMNAASWQAWGTMERRAGNLDKAAELLQKGLKASPKNTFVLQALANIECERGNTEKAIELLERAIEINPKDGGVYQAYAMLLARSGKRMQAREMFKRGCSEAKKHAALWQAWAVHELERKNVKEARSIFQQGVWEAGSDKKIFVLWQAWGLMEASEG 918

HSP 2 Score: 97.0561 bits (240), Expect = 4.601e-17
Identity = 67/248 (27.02%), Postives = 111/248 (44.76%), Query Frame = 0

Query:  328 TYYAKEAL-----RKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKAT---EINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRP-----WDG 562
            ++YA + L     R+ N+  A  ++Q+C +++  +  ++     +E R  N   A  + ++ L+    N FVLQA    +   GN  KA+EL + AI   PK    +   A LL   G++ +AR  F+       ++  LW AW V E    N   AR + ++       + +    W AW +ME    N+D A   +  A+      S +  AWA +E++ GN   +  L    +A  P     WDG
Sbjct:  730 SFYAWQCLAVLEAREGNLRAARSLFQKCTDVNPMNAASWQAWGTMERRAGNLDKAAELLQKGLKASPKNTFVLQALANIECERGNTEKAIELLERAIEINPKDGGVYQAYAMLLARSGKRMQAREMFKRGCSEAKKHAALWQAWAVHELERKNVKEARSIFQQGVWEAGSDKKIFVLWQAWGLMEASEGNLDEARKYFARAVDVADRPSPSLAAWAKVEEEAGNLIESRELLEKALAIEPSNEYAWDG 977

[Close]

BLAST of EWM28726.1 vs. NCBI_GenBank
Match: gi|971514849|dbj|GAQ83365.1| (psbB mRNA maturation factor Mbb1 [Klebsormidium nitens])

HSP 1 Score: 189.119 bits (479), Expect = 1.468e-46
Identity = 115/333 (34.53%), Postives = 173/333 (51.95%), Query Frame = 0

Query:  317 PKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWC-ADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNP-RGRHVYYIWHAWAVMEEKSG 647
            PK L   LDL  Y A+  + KR   +A  I+ +C++    DGRAY  LA++  RR     A+ +YE A      +N +V Q Y V ++R GNL KA +LFDAA+    +H+AAW G  +L    G   +A+  F   +++ P N  L     + E+  GN   AR+   K T   PR++  W AWA++E E  N   A +L+Q A +  P S   Y AWA  E + G  + A  LF +G+A RP D    Q +A  L + G++  A  +F++    DP H P +QA+ ++  + G    AR +F++G    P     V  ++ AW V+EE+ G
Sbjct:  531 PKKLKINLDLDLYRARNLVFKRQFTQAENIFYKCIKDFPEDGRAYCQLAKLLERRGELDTAREMYESAEAAAKGENAYVWQMYAVLEERAGNLSKARKLFDAALVVDKEHAAAWHGWGKLEKRDGNLVKAKSLFLRGLKNCPTNAYLHQELALIEKEAGNAAQAREYFEKGTGYAPRSAALWQAWALLEAECGNAAKARELFQKAKEVSPRSGPVYLAWALFEAECGETKAALELFETGLAYRPRDVVLMQAFARFLYDEGDLARARLLFRRATLLDPRHQPSWQAWAIIEWKEGNVPKARELFQKGVWAAPGNNADVVKVFQAWGVLEERQG 863

HSP 2 Score: 102.834 bits (255), Expect = 7.458e-19
Identity = 76/300 (25.33%), Postives = 139/300 (46.33%), Query Frame = 0

Query:  330 YAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAW-------------------GVAER---------------REGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSS----HTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQE 591
            YA    R  N+ +A +++   + +D+    A+ G  ++E R  N   A++++   L+ C  N ++ Q   + ++  GN  +A E F+    + P+ +A W   A L  E G   +AR  FQ A + +P +  ++ AW                   G+A R                EG+   AR L R+AT ++PR+   W AWA++E +  N+  A +L+Q  + A P ++      +QAW  LE+ +GN  +A  L++  +   P     ++ +AL  +  G +  A E+ +  +Q+
Sbjct:  613 YAVLEERAGNLSKARKLFDAALVVDKEHAAAWHGWGKLEKRDGNLVKAKSLFLRGLKNCPTNAYLHQELALIEKEAGNAAQAREYFEKGTGYAPRSAALWQAWALLEAECGNAAKARELFQKAKEVSPRSGPVYLAWALFEAECGETKAALELFETGLAYRPRDVVLMQAFARFLYDEGDLARARLLFRRATLLDPRHQPSWQAWAIIEWKEGNVPKARELFQKGVWAAPGNNADVVKVFQAWGVLEERQGNLTVARELYKCALKADPTSVLTWESWALLEEHVGNIFRADELRRLCMQQ 912

HSP 3 Score: 67.0106 bits (162), Expect = 9.265e-8
Identity = 45/176 (25.57%), Postives = 80/176 (45.45%), Query Frame = 0

Query:  475 NFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPN-SSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGES 649
             F  A  +  K  +  P +   +   A + +    +D A ++Y++A  A    +++ +Q +A LE+  GN   A  LF + +        A+  +    K  G +  A  +F +GL+  P +  L+Q   ++  E G    AR  FE+GT   PR      +W AWA++E + G +
Sbjct:  553 QFTQAENIFYKCIKDFPEDGRAYCQLAKLLERRGELDTAREMYESAEAAAKGENAYVWQMYAVLEERAGNLSKARKLFDAALVVDKEHAAAWHGWGKLEKRDGNLVKAKSLFLRGLKNCPTNAYLHQELALIEKEAGNAAQAREYFEKGTGYAPRS---AALWQAWALLEAECGNA 725

[Close]

BLAST of EWM28726.1 vs. NCBI_GenBank
Match: gi|1210526208|dbj|GAX15126.1| (hypothetical protein FisN_12Lh178 [Fistulifera solaris])

HSP 1 Score: 186.422 bits (472), Expect = 3.947e-46
Identity = 122/365 (33.42%), Postives = 188/365 (51.51%), Query Frame = 0

Query:  311 YRE-PREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCAD----------NPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQL-LWELGRKREA-RGYFQTA-----VQSNPENEVLWHAWGVAE-RREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDR--GNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERG-------TQTNPRGRHVYYIWHAWAVMEEKSG 647
            YRE  R    LP   D L Y AK+ ++K  V EA  +Y+R +E+D  DGRAY+GL+R   RR++   A+      +   A           NPF+LQA G  +++ G L +A  L+ +A+R  P H+A W+  AQ+   +LG+   A R  F+ A         P++  ++ AW   E ++ G+   A+KLL+ A EI+P+ S  W    ++E +L+N D A + ++N L     +S   QA+A +E  R  GN   A  LF   +   P D G  Q Y L + + G++ +A E+  KG + D  H P++QA G+L    G  + ARSIF++G       T     G +   +W AW V+E + G
Sbjct:  251 YREGVRLGNALPINADRLNYMAKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQALGCLEEKAGQLSQAESLYTSAVRSRPSHAAGWVALAQIRTRKLGQSVGAGRSCFEAAERELKASGLPQSSHVYTAWADLELKKAGDARRAKKLLKMALEIDPKCSVGWLQLGMLESDLQNWDKAEECFENVLTFDQRNSRVLQAYAIMETKRPDGNSRKAIGLFERALKANPRDAGVLQAYGLYVAKLGDIKSARELLWKGTEVDKRHAPIWQALGVLETRSGNPEEARSIFQQGIWACAQLTGCKSGGHNCARLWQAWGVLEAEEG 615

HSP 2 Score: 87.8113 bits (216), Expect = 2.636e-14
Identity = 62/208 (29.81%), Postives = 98/208 (47.12%), Query Frame = 0

Query:  338 RNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAV--YEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQ---------TAVQSNPENEV-LWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQA 533
            +N  +A   ++  +  D+ + R     A +E +R +G + +A+  +E AL+    +  VLQAYG++  + G+++ A EL         +H+  W     L    G   EAR  FQ         T  +S   N   LW AWGV E  EGN   AR+   +A + + RN     AW+ ME++L N   A  +Y+ AL  F   S + +A
Sbjct:  467 QNWDKAEECFENVLTFDQRNSRVLQAYAIMETKRPDGNSRKAIGLFERALKANPRDAGVLQAYGLYVAKLGDIKSARELLWKGTEVDKRHAPIWQALGVLETRSGNPEEARSIFQQGIWACAQLTGCKSGGHNCARLWQAWGVLEAEEGNHAAARRCFNRALDADSRNVPAITAWSSMEEKLGNRQDARAIYERALPRFSAGSESKKA 674

HSP 3 Score: 87.8113 bits (216), Expect = 3.107e-14
Identity = 72/292 (24.66%), Postives = 128/292 (43.84%), Query Frame = 0

Query:  320 LPYQLDLLTYYAKEALRKR-NVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQR--NGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFC----------WHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGN-------WELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQE 591
            LP    + T +A   L+K  +   A ++ +  +E+D      ++ L  +E   +N   A+  +E  L +   N  VLQAY + + +  +GN RKA+ LF+ A++  P+ +         + +LG  + AR       + +  +  +W A GV E R GN   AR + ++      + + C          W AW V+E E  N   A   +  AL A   +     AW+ +E+  GN       +E A   F +G   +      ++ Y L  +  G+  AA  ++Q+ ++E
Sbjct:  414 LPQSSHVYTAWADLELKKAGDARRAKKLLKMALEIDPKCSVGWLQLGMLESDLQNWDKAEECFENVLTFDQRNSRVLQAYAIMETKRPDGNSRKAIGLFERALKANPRDAGVLQAYGLYVAKLGDIKSARELLWKGTEVDKRHAPIWQALGVLETRSGNPEEARSIFQQGIWACAQLTGCKSGGHNCARLWQAWGVLEAEEGNHAAARRCFNRALDADSRNVPAITAWSSMEEKLGNRQDARAIYERALPRFSAGSESKK---ALWRNYELMEQRAGDTAAAQRVYQRAIRE 702

[Close]

BLAST of EWM28726.1 vs. NCBI_GenBank
Match: gi|1210517350|dbj|GAX23607.1| (hypothetical protein FisN_12Hh178 [Fistulifera solaris])

HSP 1 Score: 182.57 bits (462), Expect = 6.908e-45
Identity = 120/365 (32.88%), Postives = 188/365 (51.51%), Query Frame = 0

Query:  311 YRE-PREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCAD----------NPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQL-LWELGRKREA-RGYFQTA-----VQSNPENEVLWHAWGVAE-RREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDR--GNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERG-------TQTNPRGRHVYYIWHAWAVMEEKSG 647
            YRE  R    LP   D L Y AK+ ++K  V EA  +Y+R +E+D  DGRAY+GL+R   RR++   A+      +   A           NPF+LQA G  +++ G L +A  L+ +A+R  P H+A W+  AQ+   +LG+   A R  F+ A         P++  ++ AW   E ++ G+   A+KLL+ A EI+P+ S  W    ++E +L+N D A + ++N L     +S   QA+A +E  R  GN   A  LF   +   P D G  Q Y L + + G++ +A E+  +G + D  H P++QA G+L    G  + AR+IF++G       T     G +   +W AW V+E + G
Sbjct:  251 YREGVRLGNALPINADRLNYMAKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQALGCLEEKAGQLSQAESLYASAVRSRPSHAAGWVALAQIRTRKLGQSVGAGRSCFEAAERELKASGLPQSSHVYTAWADLELKKAGDPRRAKKLLKLALEIDPKCSVGWLQLGMLESDLQNWDKAEECFENVLTFDQRNSRVLQAYAIMETKRPDGNSRKAIGLFERALKANPRDAGVLQAYGLYVAKLGDIKSARELLWRGTEVDKRHAPIWQALGVLETRSGNPEEARNIFQQGIWSCAQLTGCKSGGHNCARLWQAWGVLEAEEG 615

HSP 2 Score: 88.9669 bits (219), Expect = 1.179e-14
Identity = 73/292 (25.00%), Postives = 128/292 (43.84%), Query Frame = 0

Query:  320 LPYQLDLLTYYAKEALRKRNVPE-AARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQR--NGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFC----------WHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGN-------WELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQE 591
            LP    + T +A   L+K   P  A ++ +  +E+D      ++ L  +E   +N   A+  +E  L +   N  VLQAY + + +  +GN RKA+ LF+ A++  P+ +         + +LG  + AR       + +  +  +W A GV E R GN   AR + ++      + + C          W AW V+E E  N   A   +  AL A   +     AW+ +E+  GN       +E A   F +G   +      ++ Y L  +  G+  AA  ++Q+ ++E
Sbjct:  414 LPQSSHVYTAWADLELKKAGDPRRAKKLLKLALEIDPKCSVGWLQLGMLESDLQNWDKAEECFENVLTFDQRNSRVLQAYAIMETKRPDGNSRKAIGLFERALKANPRDAGVLQAYGLYVAKLGDIKSARELLWRGTEVDKRHAPIWQALGVLETRSGNPEEARNIFQQGIWSCAQLTGCKSGGHNCARLWQAWGVLEAEEGNHAAARRCFNRALDADSRNVPAITAWSSMEEKLGNRQDARAIYERALPRFSAGSESKK---ALWRNYELMEQRAGDTAAAQRVYQRAIRE 702

[Close]

BLAST of EWM28726.1 vs. NCBI_GenBank
Match: gi|514819828|ref|XP_004984606.1| (PREDICTED: protein high chlorophyll fluorescent 107 [Setaria italica] >gi|944226780|gb|KQK91184.1| hypothetical protein SETIT_034695mg [Setaria italica])

HSP 1 Score: 180.644 bits (457), Expect = 6.908e-45
Identity = 105/331 (31.72%), Postives = 167/331 (50.45%), Query Frame = 0

Query:  318 KPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWC-ADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSG 647
            +PLP  L+L  Y  K   RK   PEA ++  +C+     DGR Y+ L ++  ++     A+AVYE   +    +NP++ Q + V + + GN+R+A ELFDAA     KH AAW G A L  + G  ++AR     A++    NE ++    + E +   F  AR L ++AT+ NP++   W AWA +E    N  +A  L++ A++A P +  ++  WA  E + GN + A  L + G A  P D    Q  AL          A  +F+K  Q DP H P++ A+G +  + G    AR++++R    N           AW V+E+++G
Sbjct:  104 RPLPINLELWLYRVKVHTRKFEFPEAEKLLDKCISFWPEDGRPYVALGKLYSKQSRYDKARAVYERGCQATQGENPYIWQCWAVLESKGGNIRRARELFDAATVADAKHIAAWHGWAILEIKQGNVKKARNLLGKALKYCGGNEYIYQTLALLEAKAERFEQARTLFQQATQSNPKSCASWLAWAQVEMRAGNNTMARKLFEKAVQASPKNRFSWHVWALFEANEGNIDRARKLLKIGHAVNPRDPVILQSLALLEYNYSSANVARVLFRKASQIDPRHQPVWIAWGWMEWKEGNARTARALYQRALSVNSTNECAARCLQAWGVLEQRAG 434

HSP 2 Score: 112.079 bits (279), Expect = 4.294e-22
Identity = 81/283 (28.62%), Postives = 123/283 (43.46%), Query Frame = 0

Query:  339 NVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLL----------------------------------RKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPN---SSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEI 584
            N+  A  ++      D     A+ G A +E ++ N   A+ +  +AL++C  N ++ Q   + + +     +A  LF  A +  PK  A+WL  AQ+    G    AR  F+ AVQ++P+N   WH W + E  EGN   ARKLL                                  RKA++I+PR+   W AW  ME +  N   A  LYQ AL        ++   QAW  LE+  GN+  A  L RS ++        +  +A   +E+G+   A EI
Sbjct:  194 NIRRARELFDAATVADAKHIAAWHGWAILEIKQGNVKKARNLLGKALKYCGGNEYIYQTLALLEAKAERFEQARTLFQQATQSNPKSCASWLAWAQVEMRAGNNTMARKLFEKAVQASPKNRFSWHVWALFEANEGNIDRARKLLKIGHAVNPRDPVILQSLALLEYNYSSANVARVLFRKASQIDPRHQPVWIAWGWMEWKEGNARTARALYQRALSVNSTNECAARCLQAWGVLEQRAGNYTAARRLLRSSLSINSQSEVTWMTWAALEEEQGDPVRAEEI 476

[Close]

BLAST of EWM28726.1 vs. NCBI_GenBank
Match: gi|168016027|ref|XP_001760551.1| (predicted protein [Physcomitrella patens] >gi|162688248|gb|EDQ74626.1| predicted protein, partial [Physcomitrella patens])

HSP 1 Score: 177.948 bits (450), Expect = 8.925e-45
Identity = 107/333 (32.13%), Postives = 170/333 (51.05%), Query Frame = 0

Query:  320 LPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWC-ADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSGESGL 651
            LP  LDL  Y+A+   +K    +A  I ++C+     DGR Y+ L  +  +      A+ V+E+  +    +N ++ QA+ V + R GN  KA +LFDAA      H AAW G A L    G  ++AR   +  ++ +  NE L     + + + G +  AR L  KAT  NP+++  W AWA+ME   E    A +L++N ++A P + + +QAWA  E   GN E A  LF+ G    P D   YQ Y L   + G +  A ++F++G+   P H P + A+  +  + G  DAAR +F+R    +PR       + AW ++E++ G  G+
Sbjct:   18 LPINLDLQLYWARLLRQKGQQNQAMEILKQCIRDWPDDGRPYVALGTLLKKLGKVQEARKVFEDGCQAVRGENAYIWQAWAVLEDRVGNTGKARKLFDAATAADRTHPAAWHGWAVLELREGNTKKARALLKKGLKFHGPNEYLLQTLALLDVKMGRYDQARILFGKATRSNPKSAASWLAWALMEASQERKTTARNLFKNGIEASPKNRYVWQAWALFEAKEGNKERARQLFQRGQQLNPLDPVIYQSYGLFEYDCGHIAIAKQLFKRGVSVGPQHQPAWIAWAWVEWKEGNLDAARELFQRAIAVDPRSMDAVRAFQAWGILEDREGNVGV 350

HSP 2 Score: 102.449 bits (254), Expect = 3.480e-19
Identity = 74/290 (25.52%), Postives = 128/290 (44.14%), Query Frame = 0

Query:  339 NVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGN----------------------------------FGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSS---HTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQE 591
            N  +A +++      DR    A+ G A +E R  N   A+A+ ++ L++   N ++LQ   +   + G   +A  LF  A R  PK +A+WL  A +     RK  AR  F+  ++++P+N  +W AW + E +EGN                                    +A++L ++   + P++   W AWA +E +  N+D A +L+Q A+   P S      +QAW  LE   GN  +A  LF+  +     +   +  +A   + +G    A E+    LQ+
Sbjct:  106 NTGKARKLFDAATAADRTHPAAWHGWAVLELREGNTKKARALLKKGLKFHGPNEYLLQTLALLDVKMGRYDQARILFGKATRSNPKSAASWLAWALMEASQERKTTARNLFKNGIEASPKNRYVWQAWALFEAKEGNKERARQLFQRGQQLNPLDPVIYQSYGLFEYDCGHIAIAKQLFKRGVSVGPQHQPAWIAWAWVEWKEGNLDAARELFQRAIAVDPRSMDAVRAFQAWGILEDREGNVGVARVLFKRALRVDSQNVPTWMSWAAMEERQGNAVRADELRSLCLQQ 395

[Close]

BLAST of EWM28726.1 vs. NCBI_GenBank
Match: gi|242035953|ref|XP_002465371.1| (protein high chlorophyll fluorescent 107 [Sorghum bicolor] >gi|1174567541|gb|OQU92711.1| hypothetical protein SORBI_3001G394800 [Sorghum bicolor])

HSP 1 Score: 179.489 bits (454), Expect = 1.426e-44
Identity = 105/331 (31.72%), Postives = 167/331 (50.45%), Query Frame = 0

Query:  318 KPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWC-ADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLLRKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPNSSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEIFQKGLQEDPYHCPLYQAFGMLLAELGRTDAARSIFERGTQTNPRGRHVYYIWHAWAVMEEKSG 647
            +PLP  L+L  Y  K   RK   PEA ++  +C+     DGR Y+ L ++  ++     A+AVYE   +    +NP++ Q + V + + GN+R+A ELFDAA     KH AAW G A L  + G  ++AR     A++    NE ++    + E +   F  AR L  +AT+ NP++   W AWA +E    N  +A +L++ A++A P +  ++  WA  E + GN + A  L + G A  P D    Q  AL          A  +F+K  Q DP H P++ A+G +  + G    AR++++R    N           AW V+E+++G
Sbjct:  101 RPLPINLELWLYRVKVHTRKFEFPEAEKLLDKCISFWPEDGRPYVALGKLFSKQSRYDKARAVYERGCQATQGENPYIWQCWAVLESKGGNIRRARELFDAATVADAKHIAAWHGWAILEIKQGNIKKARNLLGKALKYCGGNEYIYQTLALLEAKAERFEQARTLFEQATQSNPKSCASWLAWAQVEMRAGNNTMARNLFEKAVQASPKNRFSWHVWALFEANEGNIDSARKLLKIGHAVNPKDPVILQSLALLEYNFSSANVARVLFRKASQIDPRHQPVWIAWGWMEWKEGNARTARALYQRALSVNSTNECAARCLQAWGVLEQRAG 431

HSP 2 Score: 112.079 bits (279), Expect = 4.500e-22
Identity = 81/283 (28.62%), Postives = 123/283 (43.46%), Query Frame = 0

Query:  339 NVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWELGRKREARGYFQTAVQSNPENEVLWHAWGVAERREGNFGVARKLL----------------------------------RKATEINPRNSFCWHAWAVMEQELENMDLAVDLYQNALKAFPN---SSHTYQAWACLEKDRGNWELAFSLFRSGIAKRPWDGGAYQPYALALKERGEMTAAMEI 584
            N+  A  ++      D     A+ G A +E ++ N   A+ +  +AL++C  N ++ Q   + + +     +A  LF+ A +  PK  A+WL  AQ+    G    AR  F+ AVQ++P+N   WH W + E  EGN   ARKLL                                  RKA++I+PR+   W AW  ME +  N   A  LYQ AL        ++   QAW  LE+  GN+  A  L RS +         +  +A   +E+G+   A EI
Sbjct:  191 NIRRARELFDAATVADAKHIAAWHGWAILEIKQGNIKKARNLLGKALKYCGGNEYIYQTLALLEAKAERFEQARTLFEQATQSNPKSCASWLAWAQVEMRAGNNTMARNLFEKAVQASPKNRFSWHVWALFEANEGNIDSARKLLKIGHAVNPKDPVILQSLALLEYNFSSANVARVLFRKASQIDPRHQPVWIAWGWMEWKEGNARTARALYQRALSVNSTNECAARCLQAWGVLEQRAGNYTAARRLLRSSLNINSQSEVTWMTWAALEEEQGDPVRAEEI 473

The following BLAST results are available for this feature:

BLAST of EWM28726.1 vs. NCBI_GenBank

BLAST of EWM28726.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585111149\|gb\|EWM28726.1\|	0.000e+0	100.00	PsbB mRNA maturation factor [Nannochloropsis gadit...	[more]
gi\|585111148\|gb\|EWM28725.1\|	3.053e-15	100.00	PsbB mRNA maturation factor [Nannochloropsis gadit...	[more]
gi\|298707953\|emb\|CBJ30324.1\|	2.496e-78	38.74	PsbB mRNA maturation factor Mbb1 [Ectocarpus silic...	[more]
gi\|551664101\|ref\|XP_005834814.1\|	4.704e-61	33.80	hypothetical protein GUITHDRAFT_162599 [Guillardia...	[more]
gi\|971514849\|dbj\|GAQ83365.1\|	1.468e-46	34.53	psbB mRNA maturation factor Mbb1 [Klebsormidium ni...	[more]
gi\|1210526208\|dbj\|GAX15126.1\|	3.947e-46	33.42	hypothetical protein FisN_12Lh178 [Fistulifera sol...	[more]
gi\|1210517350\|dbj\|GAX23607.1\|	6.908e-45	32.88	hypothetical protein FisN_12Hh178 [Fistulifera sol...	[more]
gi\|514819828\|ref\|XP_004984606.1\|	6.908e-45	31.72	PREDICTED: protein high chlorophyll fluorescent 10...	[more]
gi\|168016027\|ref\|XP_001760551.1\|	8.925e-45	32.13	predicted protein [Physcomitrella patens] >gi\|1626...	[more]
gi\|242035953\|ref\|XP_002465371.1\|	1.426e-44	31.72	protein high chlorophyll fluorescent 107 [Sorghum ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna1864	rna1864	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications