EWM28865.1, cds1818 (CDS) Nannochloropsis gaditana

Overview
NameEWM28865.1
Unique Namecds1818
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:236243..236249 +
Alignment locationCM002458.1:236554..236819 +
Alignment locationCM002458.1:237190..237390 +
Alignment locationCM002458.1:237555..237845 +
Alignment locationCM002458.1:238034..238224 +
Alignment locationCM002458.1:238507..238624 +
Alignment locationCM002458.1:238770..238871 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28865.1
Productribonucleoside-diphosphate reductase small chain
Orig transcript idgnl|cribi|Naga_100133g14.1519.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:236243..236249 +
CM002458.1supercontigCM002458.1:236554..236819 +
CM002458.1supercontigCM002458.1:237190..237390 +
CM002458.1supercontigCM002458.1:237555..237845 +
CM002458.1supercontigCM002458.1:238034..238224 +
CM002458.1supercontigCM002458.1:238507..238624 +
CM002458.1supercontigCM002458.1:238770..238871 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009186deoxyribonucleoside diphosphate metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR009078Ferritin-like_SF
IPR030475RNR_small_AS
IPR000358RNR_small
IPR012348RNR-rel
Homology
BLAST of EWM28865.1 vs. NCBI_GenBank
Match: gi|585111292|gb|EWM28865.1| (ribonucleoside-diphosphate reductase small chain [Nannochloropsis gaditana])

HSP 1 Score: 812.372 bits (2097), Expect = 0.000e+0
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query:    1 MDGPASPPAFGISTVNMPLTEHSNIANSPEDLAASVEKKLSLGSTAAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
            MDGPASPPAFGISTVNMPLTEHSNIANSPEDLAASVEKKLSLGSTAAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF
Sbjct:    1 MDGPASPPAFGISTVNMPLTEHSNIANSPEDLAASVEKKLSLGSTAAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391          
BLAST of EWM28865.1 vs. NCBI_GenBank
Match: gi|553184758|ref|XP_005854141.1| (ribonucleoside-diphosphate reductase subunit M2 [Nannochloropsis gaditana CCMP526] >gi|422294918|gb|EKU22218.1| ribonucleoside-diphosphate reductase subunit M2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 618.231 bits (1593), Expect = 0.000e+0
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query:   95 MYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
            MYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF
Sbjct:    1 MYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 297          
BLAST of EWM28865.1 vs. NCBI_GenBank
Match: gi|1173941217|gb|OQR90437.1| (ribonucleoside-diphosphate reductase small chain [Achlya hypogyna])

HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 251/346 (72.54%), Postives = 299/346 (86.42%), Query Frame = 0
Query:   46 AAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
              QP  +   + ++ K RELAG++  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD  DWEKLTDNER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK ++L AI+T+PCV+RKA+WAL+WC+ + A++AER++AFAAVEGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEGLHCDFACL+Y+K   K   ER+  II DAV IEKQF++++LPVELIGMNS LMC+YIEFCADRLL ALG  K +H++NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG +  DQ F+L+ DF
Sbjct:    2 VTQPTPEPITEITEYKARELAGELAPEPFLSENPNRFVLFPIQHADVWEMYKKAEASFWTAEELDLVHDLKDWEKLTDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDTVEKDRVLRAIDTIPCVQRKAQWALKWCNNQIAAYAERIVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLINKLSNERIHEIIGDAVEIEKQFVSESLPVELIGMNSTLMCQYIEFCADRLLNALGATKLFHAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVSEADQTFTLDADF 347          
BLAST of EWM28865.1 vs. NCBI_GenBank
Match: gi|1173940868|gb|OQR90167.1| (ribonucleoside-diphosphate reductase small chain [Thraustotheca clavata])

HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 254/346 (73.41%), Postives = 301/346 (86.99%), Query Frame = 0
Query:   46 AAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
             AQP  + E+  ++ K REL G++  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD  DW KLTDNER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK ++L AI+T+PCV+RKA+WAL+WC+ K A++AER++AFAAVEGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEGLHCDFACL+Y+K   K   ER+  II DAVAIEKQF++++LPVELIGMNS LMCEYIEFCADRLL ALG  K Y+++NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG + +DQ F+L+ DF
Sbjct:    2 VAQPIVNSEI--TEYKRRELNGELAPEPFLSENPNRFVLFPIQHTDVWEMYKKAEASFWTAEELDLVHDMKDWTKLTDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDIVEKDRVLRAIDTIPCVQRKAKWALKWCNGKIAAYAERIVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLINKLSNERIHEIIGDAVAIEKQFVSESLPVELIGMNSSLMCEYIEFCADRLLQALGATKLYNAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVSADDQAFTLDADF 345          
BLAST of EWM28865.1 vs. NCBI_GenBank
Match: gi|669141780|ref|XP_008606452.1| (ribonucleoside-diphosphate reductase subunit M2 [Saprolegnia diclina VS20] >gi|530741736|gb|EQC39978.1| ribonucleoside-diphosphate reductase subunit M2 [Saprolegnia diclina VS20])

HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 251/346 (72.54%), Postives = 301/346 (86.99%), Query Frame = 0
Query:   46 AAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
             A P+ ++    ++ K REL G++  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD+ DWEKL+DNER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK ++L AI+T+PCV+RKA+WAL+WC+ + A++AER++AFAAVEGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEGLHCDFACL+Y+K   K   ERV  I+ DAV IEKQF++++LPVELIGMNS LMCEYIEFCADRLL ALG  K Y+++NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG + EDQ F+L+ DF
Sbjct:    2 VALPQPEIIGDITEYKRRELNGELAPEPFLSENPNRFVLFPIQHADVWEMYKKAEASFWTAEELDLVHDQKDWEKLSDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDTVEKDRVLRAIDTIPCVQRKAQWALKWCNNQIAAYAERIVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLINKLSNERVHEIVGDAVTIEKQFVSESLPVELIGMNSALMCEYIEFCADRLLHALGATKLYNAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVSAEDQSFTLDADF 347          
BLAST of EWM28865.1 vs. NCBI_GenBank
Match: gi|813198775|ref|XP_012208970.1| (ribonucleoside-diphosphate reductase small subunit [Saprolegnia parasitica CBS 223.65] >gi|641525892|gb|KDO20300.1| ribonucleoside-diphosphate reductase small subunit [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0
Identity = 248/346 (71.68%), Postives = 302/346 (87.28%), Query Frame = 0
Query:   46 AAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
             A P+ ++    ++ K REL G++  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD+ DWEKL+DNER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+ +EK ++L AI+T+PCV+RKA+WAL+WC+ + A++AER++AFAA+EGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEGLHCDFACL+Y+K   K   ER+  I+ DAV IEKQF++++LPVELIGMNS LMCEYIEFCADRLL ALG  K ++++NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG + EDQ F+L+ DF
Sbjct:    2 VAIPQPEIIGDITEYKRRELNGELTPEPFLSENPNRFVLFPIQHADVWEMYKKAEASFWTAEELDLVHDQKDWEKLSDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDTTEKDRVLRAIDTIPCVQRKAQWALKWCNSQIAAYAERIVAFAAIEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLINKLSNERIHEIVGDAVKIEKQFVSESLPVELIGMNSALMCEYIEFCADRLLHALGATKLFNAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVSAEDQSFTLDADF 347          
BLAST of EWM28865.1 vs. NCBI_GenBank
Match: gi|570972821|gb|ETP35599.1| (ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica P10297])

HSP 1 Score: 544.273 bits (1401), Expect = 0.000e+0
Identity = 260/386 (67.36%), Postives = 307/386 (79.53%), Query Frame = 0
Query:    8 PAFGISTVNMPLTEHSNIANSPE-DLAASVEKKLSLG-STAAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
            P     T+    +EH+  +  PE +L     +  + G +     EE  EL+ S+ K +EL G++  E  L DNP R+V+FPIQ  ++W MYK+AEASFWTAEELDL HD  DW KLTDNERHF+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK  LL AIET+PCV +KA WAL+WCD + +S+ ERL+AFAAVEGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEG+H DFACLLY+K   K PE RV  II+DAV IE +F+ D+LPVELIGMNS LMC+YIEF ADRLL +LG  K YH++NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+ DF
Sbjct:   61 PTTNPVTMVAASSEHNKASEQPEQELNPEFVEGFAKGVNVKDDKEEQPELEMSEFKRKELNGEIPVEPFLVDNPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVHDLKDWSKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWALKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLLYSKLVTKLPESRVHEIIRDAVVIEHEFVRDSLPVELIGMNSALMCQYIEFVADRLLYSLGVSKIYHAKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 446          
BLAST of EWM28865.1 vs. NCBI_GenBank
Match: gi|698798866|ref|XP_009832462.1| (hypothetical protein H257_08329 [Aphanomyces astaci] >gi|574112633|gb|ETV78125.1| hypothetical protein H257_08329 [Aphanomyces astaci])

HSP 1 Score: 543.502 bits (1399), Expect = 0.000e+0
Identity = 247/334 (73.95%), Postives = 295/334 (88.32%), Query Frame = 0
Query:   58 SDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
            ++ K+REL G++  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD+ DW KL+DNER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+P+EK ++L AIET+PCV RKA WAL+WCD K A++AER++AFAAVEGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEGLHCDFACL+Y+K   K  + R+  I+ DAV IEKQF++++LPVELIGMNS LMCEYIEFCADRLL +LG  K + ++NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG N+ +Q F+L+ DF
Sbjct:   16 TEHKIRELNGELAPEPFLVENPNRFVLFPIQHADVWEMYKKAEASFWTAEELDLVHDQRDWIKLSDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDPTEKDRVLRAIETIPCVMRKANWALKWCDNKRAAYAERIVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLVNKLSDTRIHEIVGDAVEIEKQFVSESLPVELIGMNSALMCEYIEFCADRLLESLGAPKLFAAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVNVSEQTFTLDADF 349          
BLAST of EWM28865.1 vs. NCBI_GenBank
Match: gi|675205263|ref|XP_008911516.1| (ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica INRA-310] >gi|566014751|gb|ETI37662.1| ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica P1569] >gi|567952248|gb|ETK77928.1| ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica] >gi|567980911|gb|ETL31361.1| ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica] >gi|568010392|gb|ETL84580.1| ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica] >gi|568040260|gb|ETM37720.1| ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica] >gi|568088110|gb|ETN02972.1| ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica INRA-310] >gi|570318508|gb|ETO66456.1| ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica P1976] >gi|570942314|gb|ETP07571.1| ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica CJ01A1])

HSP 1 Score: 542.732 bits (1397), Expect = 0.000e+0
Identity = 259/386 (67.10%), Postives = 307/386 (79.53%), Query Frame = 0
Query:    8 PAFGISTVNMPLTEHSNIANSPE-DLAASVEKKLSLG-STAAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
            P     T+    +EH+  +  PE +L     +  + G +     EE  EL+ S+ K +EL G++  E  L +NP R+V+FPIQ  ++W MYK+AEASFWTAEELDL HD  DW KLTDNERHF+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK  LL AIET+PCV +KA WAL+WCD + +S+ ERL+AFAAVEGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEG+H DFACLLY+K   K PE RV  II+DAV IE +F+ D+LPVELIGMNS LMC+YIEF ADRLL +LG  K YH++NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+ DF
Sbjct:   61 PTTNPVTMVAASSEHNKASEQPEQELNPEFVEGFAKGVNVKDDKEEQPELEMSEFKRKELNGEIPVEPFLVENPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVHDLKDWSKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWALKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLLYSKLVTKLPESRVHEIIRDAVVIEHEFVRDSLPVELIGMNSALMCQYIEFVADRLLYSLGVSKIYHAKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 446          
BLAST of EWM28865.1 vs. NCBI_GenBank
Match: gi|970628596|gb|KUF76152.1| (Ribonucleoside-diphosphate reductase small chain [Phytophthora nicotianae] >gi|970659540|gb|KUF97172.1| hypothetical protein AM588_10011002 [Phytophthora nicotianae])

HSP 1 Score: 541.962 bits (1395), Expect = 0.000e+0
Identity = 257/374 (68.72%), Postives = 304/374 (81.28%), Query Frame = 0
Query:   20 TEHSNIANSPE-DLAASVEKKLSLG-STAAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
            +EH+  +  PE +L     +  + G +     EE  EL+ S+ K +EL G++  E  L +NP R+V+FPIQ  ++W MYK+AEASFWTAEELDL HD  DW KLTDNERHF+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK  LL AIET+PCV +KA WAL+WCD + +S+ ERL+AFAAVEGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEG+H DFACLLY+K   K PE RV  II+DAV IE +F+ D+LPVELIGMNS LMC+YIEF ADRLL +LG  K YH++NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+ DF
Sbjct:    6 SEHNKASEQPEQELNPEFVEGFAKGVNVKDDKEEQPELEMSEFKRKELNGEIPVEPFLVENPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVHDLKDWSKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWALKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLLYSKLVTKLPESRVHEIIRDAVVIEHEFVRDSLPVELIGMNSALMCQYIEFVADRLLYSLGVSKIYHAKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 379          
The following BLAST results are available for this feature:
BLAST of EWM28865.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111292|gb|EWM28865.1|0.000e+0100.00ribonucleoside-diphosphate reductase small chain [... [more]
gi|553184758|ref|XP_005854141.1|0.000e+0100.00ribonucleoside-diphosphate reductase subunit M2 [N... [more]
gi|1173941217|gb|OQR90437.1|0.000e+072.54ribonucleoside-diphosphate reductase small chain [... [more]
gi|1173940868|gb|OQR90167.1|0.000e+073.41ribonucleoside-diphosphate reductase small chain [... [more]
gi|669141780|ref|XP_008606452.1|0.000e+072.54ribonucleoside-diphosphate reductase subunit M2 [S... [more]
gi|813198775|ref|XP_012208970.1|0.000e+071.68ribonucleoside-diphosphate reductase small subunit... [more]
gi|570972821|gb|ETP35599.1|0.000e+067.36ribonucleoside-diphosphate reductase small chain [... [more]
gi|698798866|ref|XP_009832462.1|0.000e+073.95hypothetical protein H257_08329 [Aphanomyces astac... [more]
gi|675205263|ref|XP_008911516.1|0.000e+067.10ribonucleoside-diphosphate reductase small chain [... [more]
gi|970628596|gb|KUF76152.1|0.000e+068.72Ribonucleoside-diphosphate reductase small chain [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1822rna1822Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications