EWM30544.1, cds181 (CDS) Nannochloropsis gaditana

Overview
NameEWM30544.1
Unique Namecds181
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:475902..475996 +
Alignment locationCM002455.1:476075..476148 +
Alignment locationCM002455.1:476334..476662 +
Alignment locationCM002455.1:476793..477566 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30544.1
ProductdTDP-glucose 4,6-dehydratase
Orig transcript idgnl|cribi|Naga_100013g37.9832.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:475902..475996 +
CM002455.1supercontigCM002455.1:476075..476148 +
CM002455.1supercontigCM002455.1:476334..476662 +
CM002455.1supercontigCM002455.1:476793..477566 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009225nucleotide-sugar metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008460dTDP-glucose 4,6-dehydratase activity
GO:0050662coenzyme binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR005888dTDP_Gluc_deHydtase
IPR016040NAD(P)-bd_dom
IPR001509Epimerase_deHydtase_N
Homology
BLAST of EWM30544.1 vs. NCBI_GenBank
Match: gi|585113208|gb|EWM30544.1| (dTDP-glucose 4,6-dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 874.389 bits (2258), Expect = 0.000e+0
Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0
Query:    1 MHVDHPDSLNGIMPSCQYTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAAGQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQGPSPDDGA 423
            MHVDHPDSLNGIMPSCQYTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAAGQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQGPSPDDGA
Sbjct:    1 MHVDHPDSLNGIMPSCQYTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAAGQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQGPSPDDGA 423          
BLAST of EWM30544.1 vs. NCBI_GenBank
Match: gi|553187699|ref|XP_005854661.1| (dTDP-glucose 4,6-dehydratase [Nannochloropsis gaditana CCMP526] >gi|422294395|gb|EKU21695.1| dTDP-glucose 4,6-dehydratase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 481.871 bits (1239), Expect = 4.647e-167
Identity = 246/406 (60.59%), Postives = 289/406 (71.18%), Query Frame = 0
Query:   10 NGIMPSCQYTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAAGQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQ 415
            NG  P  +YTPKNILVTGGAGFI SHV +LL  ++PKYKIV LD+LDYC+ LENL ++   +N+KFVKGNICSSDLVN+VLEEEEIDTI+H AAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVH I+RF+HVSTDEVYGEGAA QEPMFED VLEPTNPYAATKAGAEF+AKSY RSFNLP+IITRGNNVYGPHQYPEKLIPKF+NLL+R R +TLHGNGLNTRNFLYV                                  +DV R   ++  R          GV G         +G   ++    + KD+ +        +   G  EE     ++L FVEDR FNDLRY++NSEAL++LGWRE V+WEDGL +T++WY+Q    R+GNI+ ALVAHP+
Sbjct:    8 NGSAPEAEYTPKNILVTGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHNIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLYV----------------------------------EDVARAFEVILHR----------GVTG-----KIYNIGGTHEKANIEVAKDLIR--------LMGHGKEEE-----KMLQFVEDRAFNDLRYTVNSEALKQLGWREIVSWEDGLHKTVEWYKQHT-GRYGNIDCALVAHPR 350          
BLAST of EWM30544.1 vs. NCBI_GenBank
Match: gi|585110358|gb|EWM28017.1| (rhamnose biosynthetic enzyme expressed [Nannochloropsis gaditana])

HSP 1 Score: 482.641 bits (1241), Expect = 1.200e-166
Identity = 247/407 (60.69%), Postives = 295/407 (72.48%), Query Frame = 0
Query:   10 NGIMPSCQYTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAAGQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQG 416
            NG  P  +YTPKNILVTGGAGFI SHV +LL  ++PKYKIV LD+LDYC+ LENL ++   +N+KFVKGNICSSDLVN+VLEEEEIDTI+H AAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVH I+RF+HVSTDEVYGEGAA QEPMFED VLEPTNPYAATKAGAEF+AKSY RSFNLP+IITRGNNVYGPHQYPEKLIPKF+NLL+R R +TLHGNGLNTRNFLYV                                  +DV R   ++  R  G  G  +  + GT+   +++ + + KD     + + +G G              EE+    ++L FVEDR FNDLRY++NSEAL++LGWRE V+WEDGL +T++WY+Q    R+GNI+ ALVAHP+ 
Sbjct:   53 NGSAPEAEYTPKNILVTGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHNIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLYV----------------------------------EDVARAFEVILHR--GVTG-KIYNIGGTH---EKANIEVAKD-----LIRLMGHGK-------------EEE----KMLQFVEDRAFNDLRYTVNSEALKQLGWREIVSWEDGLHKTVEWYKQHT-GRYGNIDCALVAHPRS 396          
BLAST of EWM30544.1 vs. NCBI_GenBank
Match: gi|397571503|gb|EJK47833.1| (hypothetical protein THAOC_33424 [Thalassiosira oceanica])

HSP 1 Score: 449.899 bits (1156), Expect = 3.093e-154
Identity = 234/417 (56.12%), Postives = 287/417 (68.82%), Query Frame = 0
Query:   18 YTPKNILVTGGAG---------FIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHG-IRRFVHVSTDEVYGEGAAGQ-EPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQ-GPSPDDG 422
            Y P+NIL+TGGAG         FIGSH AILLA +YP+Y ++V DKLDYC+ L NL +++R +NFKFVKG+ICS DLV++V+ EE++DT++H AAQTHVDNSFGNSF+FTQ+NI GTHVLLESAK H  IRRF+HVSTDEVYGEG   + E M E++VLEPTNPYAATKAGAEFL KSYHRSF LP +ITRGNNVYGPHQ+PEKLIPKF N LLRGR++TLHG+G NTRNFLYV DVARA++V+LH    G+I NIGG +E++NL+VAK +I  +G+                               KD+E+  I         S  P                      DR FNDLRY+INS  L  LGW+EE++WEDGL  T++WY +    R+GNIE ALVAHP+ G +P  G
Sbjct:   13 YIPRNILLTGGAGPLIIAETLGFIGSHAAILLAKKYPQYNVIVYDKLDYCSCLANLDEISRLKNFKFVKGDICSPDLVSYVMREEDVDTVMHFAAQTHVDNSFGNSFNFTQSNIYGTHVLLESAKNHKTIRRFIHVSTDEVYGEGETFETEAMKEEHVLEPTNPYAATKAGAEFLVKSYHRSFKLPCVITRGNNVYGPHQFPEKLIPKFTNQLLRGRQVTLHGDGSNTRNFLYVEDVARAFEVILHKASPGQILNIGGENEISNLDVAKTLIDILGM-------------------------------KDKEEELI---------SFVP----------------------DRKFNDLRYTINSGKLHELGWKEEMSWEDGLKTTVEWYTKYTS-RFGNIEDALVAHPRIGVAPGAG 366          
BLAST of EWM30544.1 vs. NCBI_GenBank
Match: gi|219121781|ref|XP_002181238.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407224|gb|EEC47161.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 446.817 bits (1148), Expect = 5.856e-152
Identity = 235/411 (57.18%), Postives = 280/411 (68.13%), Query Frame = 0
Query:   10 NGIMPSC---QYTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKV-HGIRRFVHVSTDEVYGEGAAGQ-EPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQ 415
            NG  P+     YTP+NILVTGGAGFI SHVAILL  +YP+YKIVV D LDYCA L NL ++    NFKFVKG+I S DLV++VL EE+IDTI+H AAQTHVDNSFGNSF+FTQ NI GTHVLLESAK    +RRFVHVSTDEVYGEG   + +PM E++VLEPTNPYAATKAGAEFL KSY RSF LP +ITRGNNVYGPHQ+PEKLIPKF N LL+   LT+HG+G NTRNFLYVTDVA A+D+++H G  G +YNIGG +E+ NLEVA+ +++                                    D+EK                        EED     L+ FV DR FNDLRY+INS  L  LGW E ++WE+GLA T+DWY++    R+GNI+AALVAHP+
Sbjct:   67 NGTKPTAPVEDYTPENILVTGGAGFIASHVAILLCKKYPQYKIVVYDCLDYCACLANLQELFDLPNFKFVKGDIASPDLVSYVLREEKIDTILHFAAQTHVDNSFGNSFAFTQTNIYGTHVLLESAKCCDTLRRFVHVSTDEVYGEGEDFETDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSFQLPCLITRGNNVYGPHQFPEKLIPKFTNQLLKNLPLTIHGDGSNTRNFLYVTDVANAFDIIMHKGTPGHVYNIGGKNEVPNLEVARALLKLF----------------------------------DKEK------------------------EEDT----LIKFVPDRRFNDLRYTINSNKLHELGWTELMSWEEGLATTVDWYKKYTS-RYGNIDAALVAHPR 414          
BLAST of EWM30544.1 vs. NCBI_GenBank
Match: gi|299469656|emb|CBN76510.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 421.009 bits (1081), Expect = 1.214e-142
Identity = 198/271 (73.06%), Postives = 230/271 (84.87%), Query Frame = 0
Query:   15 SCQYTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAAGQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLS 285
            +  YTP+NIL+TGGAGFI SH+ ILL  +YP+Y IVV D+LDYCA LENL  + ++ N+KFVKGNICSSD+V +VL EE+IDTI+H AAQTHVDNSFGNSF FTQNNI GTHVLLESAK  GI+RFVHVSTDEVYGEG   QEPMFEDNVLEPTNPYAATKAGAEF+AK+Y RSFNLPVIITRGNNVYGPHQYPEKLIPKFIN L+RG++LT+HG G N RNFL+V DVA A++ +LH G  G IYNIGGT+E + L+VA+D++R   L S
Sbjct:   18 AAHYTPQNILITGGAGFIASHLVILLVEKYPQYNIVVFDRLDYCACLENLDCIAQKPNYKFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGSNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPS 288          

HSP 2 Score: 62.003 bits (149), Expect = 6.149e-7
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0
Query:  355 FVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQ 400
            F +DR FNDLRY+INS+ L  LGW+EE  WE GL  T++W   Q Q
Sbjct:  297 FGDDRVFNDLRYTINSDKLAALGWKEEKTWEQGLKETVEWVPDQQQ 342          
BLAST of EWM30544.1 vs. NCBI_GenBank
Match: gi|224002825|ref|XP_002291084.1| (dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >gi|220972860|gb|EED91191.1| dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 416.387 bits (1069), Expect = 3.190e-141
Identity = 223/408 (54.66%), Postives = 274/408 (67.16%), Query Frame = 0
Query:   18 YTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVH-GIRRFVHVSTDEVYGEGAAGQ-EPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQ-GPSPDDG 422
            Y PKNIL+TGGAGFIGSHVAILLA +YP Y IVV DKLDYC+ L NL +V+R +NFKFVKG+I S DLV++V+ EE+IDT++H AAQTHVDNSFGNSF+FTQ+NI GTHV+LE+AK H G++RF+HVSTDEVYGEG   + E M E++VLEPTNPYAATKAGAEFL KSYHRSF LP +ITRGNNVYGPHQ+PEKLIPKF N +LRGR +TLHG+G NTRNFLYV                                  +DV R   +L  + +     ++ G        D     LE  ++   I   +G+GD                     L+TFV DR FNDLRY+INS  L +LGW+EE+ WE+GL  T++WY + + DR+GNIE ALVAHP+ G +P  G
Sbjct:   11 YIPKNILLTGGAGFIGSHVAILLAKKYPHYNIVVYDKLDYCSCLANLDEVSRLKNFKFVKGDITSPDLVSYVMVEEDIDTVMHFAAQTHVDNSFGNSFNFTQSNIYGTHVMLEAAKCHRGMKRFIHVSTDEVYGEGETFETEAMKEEHVLEPTNPYAATKAGAEFLVKSYHRSFKLPCVITRGNNVYGPHQFPEKLIPKFTNQILRGRPVTLHGDGSNTRNFLYV----------------------------------EDVARAFEVLVHKASPGMIYNIGG--------DNEISNLEVAKKLIEI---LGKGDQ-----------------MDELITFVPDRKFNDLRYTINSGKLHKLGWKEEMNWEEGLRTTVEWYTKYS-DRFGNIEDALVAHPRIGVAPGAG 355          
BLAST of EWM30544.1 vs. NCBI_GenBank
Match: gi|470409877|ref|XP_004336227.1| (dTDPD-glucose 4,6-dehydratase [Acanthamoeba castellanii str. Neff] >gi|440793013|gb|ELR14214.1| dTDPD-glucose 4,6-dehydratase [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 407.527 bits (1046), Expect = 2.329e-137
Identity = 211/416 (50.72%), Postives = 275/416 (66.11%), Query Frame = 0
Query:   16 CQYTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAA---GQEPMF---------EDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGN----IEAALVAHPQ 415
             +Y+PKNIL+TGGAGFIGSHV  LL ++YP YKIV  DKLDYC+SL+N+A +  + N++FV+GNI S++LV+F+LEEE+IDTIVH AAQTHVDNSFGNSF FT+ N+LGTHVLLE+AK+ GI+RF+HVSTDEV GE  A      P+           DN+LEPTNPYAA+KAGAE + +SYHRSFNLPVIITR NNVYGPHQ+PEK+IPKFI+LL RGR+  +HG+G N RN+++  DVA A+D ++H G  GK+Y+IG     +NL+VA+ +++                                GLE DQE                               +  L +VEDR FNDLRY I+   +++LGW+ EV +E+GLA+TI+WY  Q  D W N    +++ALVAHP+
Sbjct:    3 TEYSPKNILITGGAGFIGSHVVSLLVNKYPDYKIVNYDKLDYCSSLKNIASLQSKPNYRFVEGNILSAELVSFILEEEQIDTIVHFAAQTHVDNSFGNSFQFTETNVLGTHVLLEAAKLAGIKRFIHVSTDEVKGENEALTTHHSPLTLVVSVRQIGADNILEPTNPYAASKAGAELVVRSYHRSFNLPVIITRSNNVYGPHQFPEKIIPKFISLLRRGRKCFIHGSGSNKRNYIFAGDVAAAFDEIIHRGVVGKVYSIGSEDCYSNLDVARRLLKAF------------------------------GLE-DQE-------------------------------SEYLEYVEDRMFNDLRYWIDGSEMQKLGWKPEVLFEEGLAKTIEWY--QHPDHWNNWIASVDSALVAHPR 354          
BLAST of EWM30544.1 vs. NCBI_GenBank
Match: gi|676384021|ref|XP_009035289.1| (hypothetical protein AURANDRAFT_23143, partial [Aureococcus anophagefferens] >gi|323454628|gb|EGB10498.1| hypothetical protein AURANDRAFT_23143, partial [Aureococcus anophagefferens])

HSP 1 Score: 399.438 bits (1025), Expect = 8.527e-135
Identity = 192/260 (73.85%), Postives = 218/260 (83.85%), Query Frame = 0
Query:   25 VTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAAGQ-EPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGL 283
            VTGGAGFI SHV ILLA +     IV  D+LDYCA +ENL +V +  N+KFVKG+ICS+DLVNFVLE EE+DTI+H AAQTHVDNSFGNSF FT+NNI+GTHVLLE+AKVH I+RFVHVSTDEVYGEG   + EPM ED+VLEPTNPYAATKA AEFL KSYHRSF LP+IITRGNNVYGPHQ+PEKLIPKF+N L RGR +TLHG G NTRNFLYV DVARA+D +LH    GKIYNIGG +E +NL VAK++IR MGL
Sbjct:    1 VTGGAGFIASHVVILLAKKRGPGVIVNFDRLDYCACIENLNEVAKLPNYKFVKGDICSADLVNFVLETEEVDTIMHFAAQTHVDNSFGNSFQFTRNNIMGTHVLLEAAKVHSIKRFVHVSTDEVYGEGENMETEPMIEDHVLEPTNPYAATKAAAEFLVKSYHRSFQLPIIITRGNNVYGPHQFPEKLIPKFVNQLARGRPVTLHGTGANTRNFLYVEDVARAFDCILHKAAVGKIYNIGGCNERSNLSVAKELIRIMGL 260          
BLAST of EWM30544.1 vs. NCBI_GenBank
Match: gi|1210514462|dbj|GAX26571.1| (dTDP-glucose 4,6-dehydratase [Fistulifera solaris])

HSP 1 Score: 390.963 bits (1003), Expect = 5.158e-131
Identity = 212/400 (53.00%), Postives = 262/400 (65.50%), Query Frame = 0
Query:   18 YTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKV-HGIRRFVHVSTDEVYGEGA-AGQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQ 415
            Y P+NI++TGGAGFI SHVAILL  +YP+YKIVV D LDYCA L NL ++    NFKFVKG+I S DLV++VL+EE+IDTI+H AAQTHVDNSFGNSF+FTQ NI GTHVLLESAK    I+RFVHVSTDEVYGEG     +PM E++VLEPTNPYAATKAGAEFL KSY RSF +P +ITRGNNVYGPHQ+PEKLIPKF N+LLR   LT+HG+G NTRNFLYVTDVA A+D ++H GE G +YNIGG +E+ANL+VA+ +++    L G+E                         +++QE  +   D    D   T       N   +  +  L+ + E                   G +  V W          Y+Q +  R+GNI+AALVAHP+
Sbjct:   11 YVPQNIMITGGAGFIASHVAILLCKKYPQYKIVVYDNLDYCACLANLQELFDAPNFKFVKGDITSPDLVSYVLKEEKIDTILHFAAQTHVDNSFGNSFAFTQTNIFGTHVLLESAKCCEYIKRFVHVSTDEVYGEGEDFDTDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSFKMPCLITRGNNVYGPHQFPEKLIPKFTNMLLRDIPLTIHGDGTNTRNFLYVTDVANAFDTIMHKGEPGHVYNIGGKNEIANLDVARALLK----LFGKE-------------------------DREQELITFVPDRKFNDLRYT----INSNKLHELGWKELMNWEE-------------------GLKTTVDW----------YKQYSH-RYGNIDAALVAHPR 347          
The following BLAST results are available for this feature:
BLAST of EWM30544.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113208|gb|EWM30544.1|0.000e+0100.00dTDP-glucose 4,6-dehydratase [Nannochloropsis gadi... [more]
gi|553187699|ref|XP_005854661.1|4.647e-16760.59dTDP-glucose 4,6-dehydratase [Nannochloropsis gadi... [more]
gi|585110358|gb|EWM28017.1|1.200e-16660.69rhamnose biosynthetic enzyme expressed [Nannochlor... [more]
gi|397571503|gb|EJK47833.1|3.093e-15456.12hypothetical protein THAOC_33424 [Thalassiosira oc... [more]
gi|219121781|ref|XP_002181238.1|5.856e-15257.18predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|299469656|emb|CBN76510.1|1.214e-14273.06conserved unknown protein [Ectocarpus siliculosus][more]
gi|224002825|ref|XP_002291084.1|3.190e-14154.66dtdp-glucose 4,6-dehydratase [Thalassiosira pseudo... [more]
gi|470409877|ref|XP_004336227.1|2.329e-13750.72dTDPD-glucose 4,6-dehydratase [Acanthamoeba castel... [more]
gi|676384021|ref|XP_009035289.1|8.527e-13573.85hypothetical protein AURANDRAFT_23143, partial [Au... [more]
gi|1210514462|dbj|GAX26571.1|5.158e-13153.00dTDP-glucose 4,6-dehydratase [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna181rna181Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications