EWM28860.1, cds1809 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28860.1 vs. NCBI_GenBank
Match: gi|585111287|gb|EWM28860.1| (mitochondrial carrier protein [Nannochloropsis gaditana]) HSP 1 Score: 689.108 bits (1777), Expect = 0.000e+0 Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 0 Query: 1 MDNYRSAPSSPAPLTKSTVTKRSPPELGQLSPHHVERESRTINARKQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTARECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGVYSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFDVVKDWL 342 MDNYRSAPSSPAPLTKSTVTKRSPPELGQLSPHHVERESRTINARKQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTARECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGVYSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFDVVKDWL Sbjct: 1 MDNYRSAPSSPAPLTKSTVTKRSPPELGQLSPHHVERESRTINARKQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTARECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGVYSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFDVVKDWL 342
BLAST of EWM28860.1 vs. NCBI_GenBank
Match: gi|553188444|ref|XP_005854798.1| (hypothetical protein NGA_0360510, partial [Nannochloropsis gaditana CCMP526] >gi|422294266|gb|EKU21566.1| hypothetical protein NGA_0360510, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0 Identity = 285/287 (99.30%), Postives = 285/287 (99.30%), Query Frame = 0 Query: 1 MDNYRSAPSSPAPLTKSTVTKRSPPELGQLSPHHVERESRTINARKQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTARECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGVYSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAG 287 MDNYR APSSPAPLTKSTVTKRSPPELGQLSPHHVERESRTINARKQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTARECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSP CLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGVYSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAG Sbjct: 1 MDNYRLAPSSPAPLTKSTVTKRSPPELGQLSPHHVERESRTINARKQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTARECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPPCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGVYSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAG 287
BLAST of EWM28860.1 vs. NCBI_GenBank
Match: gi|470407729|ref|XP_004336065.1| (carrier superfamily protein [Acanthamoeba castellanii str. Neff] >gi|440792844|gb|ELR14052.1| carrier superfamily protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 223.402 bits (568), Expect = 1.981e-67 Identity = 129/308 (41.88%), Postives = 172/308 (55.84%), Query Frame = 0 Query: 46 KQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLT--ARECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHG-----------VYSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFDVVKD 340 K + AGS+A VS VC+P+D++RT LQTT + +C + + EG YKG+S+PLAAQA+ KAI+FG AQ+ ++ R R +S SPQ LS E+ LCG +G VN +V P+ELVRNRL+ + Y+GP DC + + G RGLW G+ PTL RDGPGVGAW+ +F K L+ K+ K LG LLLAG+ GV +W A P DT+KSVMQ GK M + L REGG+ R +RG+ R VPG+AAT AT+ ++ D Sbjct: 19 KDLFAGSVAGMVSLAVCYPLDIVRTRLQTTDASRFNGVIDCFAKTVKGEGFLALYKGMSSPLAAQALQKAIMFGAYGAAQRFIVG---GRDRGTTS--SPQPLSTFELLLCGMFAGSVNTVVAAPIELVRNRLMTQYHAKAASGAADATFYTGPIDCCKKIVQQHGLRGLWRGVGPTLLRDGPGVGAWYASFEFVKRLLIPEGKTAK------------DLGFSRLLLAGAAGGVGYWVTAFPQDTIKSVMQ---TDKAGKYRNMAHCAQELFREGGVPRFYRGFLMGITRGVPGAAATFATYSIIMD 306
BLAST of EWM28860.1 vs. NCBI_GenBank
Match: gi|675207235|ref|XP_008912502.1| (hypothetical protein PPTG_16767 [Phytophthora parasitica INRA-310] >gi|568087245|gb|ETN02119.1| hypothetical protein PPTG_16767 [Phytophthora parasitica INRA-310]) HSP 1 Score: 197.593 bits (501), Expect = 1.225e-57 Identity = 122/299 (40.80%), Postives = 156/299 (52.17%), Query Frame = 0 Query: 46 KQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTAR-ECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGV------YSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLG-VGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFD 336 K V+AGS++ S + CHP D +RT LQ + C ++ + E M+G YKG P +Q VYKAIIF T+ST + +L P S L P GA++GGVNA +V PVELVRNRL V + Y G CV Q R G +W GL T+ RD GV +FL + K KR A KLG + LL AG+ GV+FW VALPFDT+KS++Q G GK G+ RLVRE G+ +LFRGWQ AF R +P +A T TF+ Sbjct: 16 KSVVAGSVSGMASVVACHPFDTIRTRLQLSPSRFRGFFHCAQQTIQQETMRGLYKGFLPPFFSQGVYKAIIFTTSSTLRNDVL--------PHISLLQPVLTPTVVSLTAGAIAGGVNAFLVAPVELVRNRLQVQYDSQPETRKYRGAYHCVTQVVRTEGITAMWKGLTTTVIRDSLGVAFYFLGYDFAK----------------KRLAESGKLGEMATLLTAGAFGGVSFWAVALPFDTIKSLIQADG--KTGKYTGLASSTARLVREEGVMQLFRGWQAAFSRGIPSAAITFWTFE 288
BLAST of EWM28860.1 vs. NCBI_GenBank
Match: gi|570971565|gb|ETP34684.1| (hypothetical protein F442_17032 [Phytophthora parasitica P10297]) HSP 1 Score: 196.823 bits (499), Expect = 2.599e-57 Identity = 121/299 (40.47%), Postives = 155/299 (51.84%), Query Frame = 0 Query: 46 KQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTAR-ECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGV------YSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLG-VGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFD 336 K V+AGS++ S + CHP D +RT LQ + C ++ + E M+G YKG P +Q VYKAIIF T+ST + +L P S L P GA++GGVNA +V PVELVRNRL V + Y G CV Q R G +W GL T+ RD GV +FL + K KR KLG + LL AG+ GV+FW VALPFDT+KS++Q G GK G+ RLVRE G+ +LFRGWQ AF R +P +A T TF+ Sbjct: 16 KSVVAGSVSGMASVVACHPFDTIRTRLQLSPSRFRGFFHCAQQTIQQETMRGLYKGFLPPFFSQGVYKAIIFTTSSTLRNDVL--------PHISLLQPVLTPTVVSLTAGAIAGGVNAFLVAPVELVRNRLQVQYDSQPETRKYRGAYHCVTQVVRTEGITAMWKGLTTTVIRDSLGVAFYFLGYDFAK----------------KRLTKSGKLGEMATLLTAGAFGGVSFWAVALPFDTIKSLIQADG--KTGKYTGLASSTARLVREEGVMQLFRGWQAAFSRGIPSAAITFWTFE 288
BLAST of EWM28860.1 vs. NCBI_GenBank
Match: gi|566013861|gb|ETI36772.1| (hypothetical protein F443_17157 [Phytophthora parasitica P1569] >gi|567951285|gb|ETK76988.1| hypothetical protein L915_16698 [Phytophthora parasitica] >gi|567979946|gb|ETL30417.1| hypothetical protein L916_16606 [Phytophthora parasitica] >gi|568009448|gb|ETL83650.1| hypothetical protein L917_16425 [Phytophthora parasitica] >gi|568039355|gb|ETM36851.1| hypothetical protein L914_16533 [Phytophthora parasitica] >gi|570317544|gb|ETO65492.1| hypothetical protein F444_17200 [Phytophthora parasitica P1976] >gi|570941341|gb|ETP06598.1| hypothetical protein F441_17031 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 196.438 bits (498), Expect = 4.307e-57 Identity = 121/299 (40.47%), Postives = 155/299 (51.84%), Query Frame = 0 Query: 46 KQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTAR-ECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGV------YSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLG-VGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFD 336 K V+AGS++ S + CHP D +RT LQ + C ++ + E M+G YKG P +Q VYKAIIF T+ST + +L P S L P GA++GGVNA +V PVELVRNRL V + Y G CV Q R G +W GL T+ RD GV +FL + K KR KLG + LL AG+ GV+FW VALPFDT+KS++Q G GK G+ RLVRE G+ +LFRGWQ AF R +P +A T TF+ Sbjct: 16 KSVVAGSVSGMASVVACHPFDTIRTRLQLSPSRFRGFFHCAQQTIQQETMRGLYKGFLPPFFSQGVYKAIIFTTSSTLRNDVL--------PHISLLQPVLTPTVVSLTAGAIAGGVNAFLVAPVELVRNRLQVQYDSQPETRKYRGAYHCVTQVVRTEGITAMWKGLTTTVIRDSLGVAFYFLGYDFAK----------------KRLTESGKLGEMATLLTAGAFGGVSFWAVALPFDTIKSLIQADG--KTGKYTGLASSTARLVREEGVMQLFRGWQAAFSRGIPSAAITFWTFE 288
BLAST of EWM28860.1 vs. NCBI_GenBank
Match: gi|301101648|ref|XP_002899912.1| (Mitochondrial Carrier (MC) Family [Phytophthora infestans T30-4] >gi|262102487|gb|EEY60539.1| Mitochondrial Carrier (MC) Family [Phytophthora infestans T30-4]) HSP 1 Score: 194.512 bits (493), Expect = 2.430e-56 Identity = 122/307 (39.74%), Postives = 160/307 (52.12%), Query Frame = 0 Query: 46 KQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTAR-ECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPP--SSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHG------VYSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLG-VGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFDVVKDWL 342 K V+AGS++ VS + CHP D +RT LQ + C ++ E M+G YKG P +Q VYKA+IF T+ST + +L P P L+P +S GA++GGVNA +V PVELVRNRL V + Y G CV Q R G +W GL T+ RD GV +FL + K KR + KLG LL AG+ G++FW VALPFDT+KS++Q G GK G+ RLVRE G+ +LFRGWQ AF R +P +A T TF+ +L Sbjct: 16 KSVVAGSVSGMVSVVACHPFDTIRTRLQLSPTRFRGFFHCAQQTVHQETMRGLYKGFLPPFFSQGVYKAVIFTTSSTLRNDVL------PHMPLLQPILTPTAVS----LTAGAVAGGVNAFLVAPVELVRNRLQVQYDNQPDTRKYRGAYHCVTQVVRSEGITAMWKGLTTTVIRDSLGVAFYFLGYDFAK----------------KRLSESGKLGETATLLTAGAVGGISFWAVALPFDTIKSLIQADG--RTGKYTGLVSSTARLVREEGVMQLFRGWQAAFSRGIPSAAITFWTFERANKFL 294
BLAST of EWM28860.1 vs. NCBI_GenBank
Match: gi|695412474|ref|XP_009525747.1| (hypothetical protein PHYSODRAFT_499656 [Phytophthora sojae] >gi|348676872|gb|EGZ16689.1| hypothetical protein PHYSODRAFT_499656 [Phytophthora sojae]) HSP 1 Score: 190.274 bits (482), Expect = 9.588e-55 Identity = 119/307 (38.76%), Postives = 159/307 (51.79%), Query Frame = 0 Query: 46 KQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTAR-ECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNL--SPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGV------YSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLG-VGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFDVVKDWL 342 K V AGS++ S + CHP D +RT LQ + C ++ + E M+G YKG P +Q VYKA+IF T+ST + +L P P L +P +S GA++GGVNA +V PVELVRNRL V + Y G CV Q R G +W GL T+ RD GV +FL + K +R +LG LL AG+ GV+FW VALPFDT+KS++Q G +GK G+ +LVRE G+ +LFRGWQ AF R +P +A T TF+ +L Sbjct: 18 KSVAAGSVSGMASVVACHPFDTIRTRLQLSPARFCGFFHCAQQTVQQESMRGLYKGFLPPFFSQGVYKAVIFTTSSTLRNDVL------PHVPLLQLVLTPTVVS----LTAGAVAGGVNAFLVAPVELVRNRLQVQYDNQPASRRYRGAYHCVTQVVRNEGIAAMWKGLTTTVIRDSLGVAFYFLGYDFAK----------------QRLTASGRLGETATLLTAGAFGGVSFWAVALPFDTIKSLIQADG--RDGKYTGLVSSTAKLVREEGVMQLFRGWQAAFSRGIPSAAITFWTFERANKFL 296
BLAST of EWM28860.1 vs. NCBI_GenBank
Match: gi|1214703612|gb|OWZ15598.1| (Mitochondrial Carrier (MC) protein [Phytophthora megakarya]) HSP 1 Score: 183.341 bits (464), Expect = 2.075e-52 Identity = 111/287 (38.68%), Postives = 148/287 (51.57%), Query Frame = 0 Query: 58 STLVCHPIDVLRTELQTTQETLTAR-ECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGV------YSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRGGKREAGEEKLG-VGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFD 336 S +VCHP D +RT LQ + C ++ + E M+G YKG P +Q VYKA+IF T+S + +L P L P GA++GGVNA +VTPVEL+RNRL V + Y G CV Q R G +W GL T+ RD GV +FL + K +R + KLG LL AG+ GV+FWT+ALPFDT+KS++Q G E K G+ +LVRE G+ +L+RGWQ AF R +P +A T TF+ Sbjct: 3 SVVVCHPFDTIRTRLQLSPTRFRGFFHCAQQTIQQESMRGLYKGFLPPFFSQGVYKAVIFTTSSALRNDVL--------PNVLLLQPVLTPTIVSLTTGAVAGGVNAFLVTPVELIRNRLQVQYDNHPETRRYRGSFHCVTQVVRNEGIAAMWKGLTTTVIRDSLGVAFYFLGYDFAK----------------QRLSANGKLGETATLLTAGAFGGVSFWTIALPFDTIKSLIQADG--KEDKYTGLVSTTTKLVREEGVMQLYRGWQAAFSRGIPSAAITFWTFE 263
BLAST of EWM28860.1 vs. NCBI_GenBank
Match: gi|813150067|ref|XP_012200680.1| (hypothetical protein SPRG_06473 [Saprolegnia parasitica CBS 223.65] >gi|641534678|gb|KDO28617.1| hypothetical protein SPRG_06473 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 178.333 bits (451), Expect = 2.897e-50 Identity = 116/309 (37.54%), Postives = 163/309 (52.75%), Query Frame = 0 Query: 39 SRTINARKQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTARECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPQCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVV----SHGVYSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLA-WKKSTKGLRGGKREAGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFDVVKDWL 342 SR + V+AGS++ S +VCHP+D +RT LQ + + + + EG +G Y+G P +QAVYK++IF T S +QLL A T P P S + + G ++GG+NA +V PVELVRNRL V + YSG D + + + G LW GL T+ RD GVG +F+ F K L + W +T+ +L+AG+ GVAFWT+ALPFDT+K+V+QV + +GM LVR GL R+F GWQ AF R +PG+A T +D +L Sbjct: 4 SRQPTFYEHVVAGSVSGMSSVVVCHPLDTIRTRLQHA-SSRSFTSVVASTIQHEGFRGLYRGFFPPFFSQAVYKSVIFTTQSKVRQLL-AATIAEPSPLLSTI-----------VSGGIAGGINATLVAPVELVRNRLQVQGTSASQQYSGTFDVIAKVVKREGVFALWKGLSATITRDALGVGLYFMGFDVAKTHLPSDWHPTTR------------------VLIAGAIGGVAFWTIALPFDTIKTVIQV----NPHNTKGMLATGLDLVRRDGLGRVFYGWQAAFSRGIPGAAITFYAYDTTMAYL 277 The following BLAST results are available for this feature:
BLAST of EWM28860.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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