EWM28885.1, cds1787 (CDS) Nannochloropsis gaditana

Overview
NameEWM28885.1
Unique Namecds1787
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:130127..130225 +
Alignment locationCM002458.1:130408..130471 +
Alignment locationCM002458.1:130634..130716 +
Alignment locationCM002458.1:130869..130916 +
Alignment locationCM002458.1:131154..131255 +
Alignment locationCM002458.1:131608..131665 +
Alignment locationCM002458.1:131845..131929 +
Alignment locationCM002458.1:132064..132159 +
Alignment locationCM002458.1:132333..132474 +
Alignment locationCM002458.1:132758..132889 +
Alignment locationCM002458.1:133310..133410 +
Alignment locationCM002458.1:133607..133786 +
Alignment locationCM002458.1:134009..134119 +
Alignment locationCM002458.1:134367..134499 +
Alignment locationCM002458.1:134709..134843 +
Alignment locationCM002458.1:135062..135140 +
Alignment locationCM002458.1:135245..135444 +

Link to JBrowse

Properties
Property NameValue
Start range130127
Start range.
Protein idEWM28885.1
Productexosome complex exonuclease
Partialtrue
Orig transcript idgnl|cribi|Naga_100269g1.9910.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:130127..130225 +
CM002458.1supercontigCM002458.1:130408..130471 +
CM002458.1supercontigCM002458.1:130634..130716 +
CM002458.1supercontigCM002458.1:130869..130916 +
CM002458.1supercontigCM002458.1:131154..131255 +
CM002458.1supercontigCM002458.1:131608..131665 +
CM002458.1supercontigCM002458.1:131845..131929 +
CM002458.1supercontigCM002458.1:132064..132159 +
CM002458.1supercontigCM002458.1:132333..132474 +
CM002458.1supercontigCM002458.1:132758..132889 +
CM002458.1supercontigCM002458.1:133310..133410 +
CM002458.1supercontigCM002458.1:133607..133786 +
CM002458.1supercontigCM002458.1:134009..134119 +
CM002458.1supercontigCM002458.1:134367..134499 +
CM002458.1supercontigCM002458.1:134709..134843 +
CM002458.1supercontigCM002458.1:135062..135140 +
CM002458.1supercontigCM002458.1:135245..135444 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR022966RNase_II/R_CS
Homology
BLAST of EWM28885.1 vs. NCBI_GenBank
Match: gi|585111318|gb|EWM28885.1| (exosome complex exonuclease, partial [Nannochloropsis gaditana])

HSP 1 Score: 1268.83 bits (3282), Expect = 0.000e+0
Identity = 615/615 (100.00%), Postives = 615/615 (100.00%), Query Frame = 0
Query:    1 VLWVLASQRGPRRGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNADIVSVDFCKSIIRSVASLSYQEAQNIHDDPHAQDAVAQGIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKDDPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTIDLKGLADQGLLNRQADGHRITCPGKVELKVFDKIRVGIRVAEGKAAHRDAVVYTLQSPRIPGLDVEREEGARNVEGGGKKRKSADAKKK 615
            VLWVLASQRGPRRGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNADIVSVDFCKSIIRSVASLSYQEAQNIHDDPHAQDAVAQGIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKDDPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTIDLKGLADQGLLNRQADGHRITCPGKVELKVFDKIRVGIRVAEGKAAHRDAVVYTLQSPRIPGLDVEREEGARNVEGGGKKRKSADAKKK
Sbjct:    1 VLWVLASQRGPRRGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNADIVSVDFCKSIIRSVASLSYQEAQNIHDDPHAQDAVAQGIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKDDPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTIDLKGLADQGLLNRQADGHRITCPGKVELKVFDKIRVGIRVAEGKAAHRDAVVYTLQSPRIPGLDVEREEGARNVEGGGKKRKSADAKKK 615          
BLAST of EWM28885.1 vs. NCBI_GenBank
Match: gi|299115727|emb|CBN74292.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0
Identity = 368/601 (61.23%), Postives = 457/601 (76.04%), Query Frame = 0
Query:   15 GGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNADIVSVDFCKSIIRSVASLSYQEAQNIHDDPHAQDAVAQGIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKDDPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTIDLKGLADQGLLNRQADGHRITCP------GKVELKVFDKIRVGIRVAEGKAAHRDAVVYTLQSPRIPGLDVEREEGARNVEGGGKKRKS 609
            G G + SALF+PVDR++P +RIQTRQRDVL  KRILVA+D+WPA  +YP GHY+KTLG  G K  ETEV+L E++IP E FS KV+ACLPP DW++TPEN++GR DLR L V+SIDPPGCKDIDDALH  PL NGN  VGVHIADV++FV+ GSALD+EA++RSTSTYLV+RRLDMLP +LTETLCSL    D FAFSV+WE+TP   IV VDFCKSII SVA L+Y EAQ + DDP+ QD  A+ +R LN LAK  R +RM++GAL LAS EV+FVLD++S +P DVQMY LKET+ALVEEFMLLANITVGKKILRH+PTLS+LRRHPSPSR++F+ L+A A + G  L VD+S +L QSLD +  + DP  NK++RIL+TRCM PAQYFCSGE SQ++WHHYGLAAPIYTHFTSPIRRYAD+ VHRLL A+IGVAPLP  L+DK  +H+L ENMNRRH++AQ AGR S   HT ++F  NP E EDA++L + +T+L V+VPRFGIEGTI+L         ++QA       P      G+  +++ DK+RV + V    A H+ A + TL SP + G+  E       +  G ++RK+
Sbjct:  399 GKGQSTSALFMPVDRKIPWVRIQTRQRDVLSTKRILVAMDSWPAWCKYPLGHYVKTLGEKGAKATETEVILLEHEIPHESFSGKVLACLPPEDWAITPENSEGRKDLRHLPVLSIDPPGCKDIDDALHARPLENGNLEVGVHIADVTHFVEAGSALDQEASSRSTSTYLVERRLDMLPGMLTETLCSLKPNVDRFAFSVIWEMTPAGVIVDVDFCKSIIHSVAGLTYNEAQLMLDDPNIQDVKAESVRRLNDLAKIFRKRRMDSGALTLASPEVRFVLDSESQNPTDVQMYALKETNALVEEFMLLANITVGKKILRHFPTLSVLRRHPSPSRQQFDGLLAIAQAVGIKLDVDNSKKLAQSLDRATREGDPYFNKLLRILSTRCMMPAQYFCSGEQSQEDWHHYGLAAPIYTHFTSPIRRYADVCVHRLLGAAIGVAPLPAFLMDKALLHNLTENMNRRHRSAQLAGRASVGLHTEMYFANNPTE-EDAFVLSVDKTKLSVIVPRFGIEGTIELDAGDGTFDFDKQALKLVYVPPSSVGDVGQTSIQIMDKVRVFVDVV-NNARHQGARM-TLISP-VMGVGEEVPVPEPAIPSGKRQRKT 995          
BLAST of EWM28885.1 vs. NCBI_GenBank
Match: gi|1210514771|dbj|GAX26250.1| (exosome complex exonuclease DIS3/RRP44 [Fistulifera solaris])

HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0
Identity = 332/575 (57.74%), Postives = 426/575 (74.09%), Query Frame = 0
Query:   13 RGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNADIVSVDFCKSIIRSVASLSYQEAQNIHDDPH-AQDAVAQGIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKDDPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRI-----LETRLIVLVPRFGIEGTIDLKGLADQGLLNRQADGHRITCPGKVE---LKVFDKIRVGIRVAEGKAAHRDAVV 578
            R     T + +F PV++++P + ++T QRD L  +RI+V++D+WPA+SRYP GHY++T+G AGDK+VETEVLL ++DIP EPF   V+ACLPP D+ ++ EN+ GRVDLR L V+SIDPPGCKDIDDALHC  LPNGN+ VGVHIADV+++V+PG+A+D EAANRSTSTYLV +RLDMLP LLT  LCSL    D +AFSVLWE++P+ +I+ VDF KSII S+A+L+YQ+AQ+  D P    D  A  ++ L  LA+K R +R++AGAL LAS EVKFVLD++S +P DVQ Y L E +ALVEEFMLLAN+TV KKILR YPTLS+LRRHP+P+R  F+ LI+ A S G S+ ++DS +L  SLDA+  K DP INK++RIL+TRCM PAQYFCSGE    EWHHYGLAAP+YTHFTSPIRRYAD+ VHRLLAASI VAPLP+ L  K  MHDL  NMNRRH+AAQ AGR S   HT+++F  +  + EDAY+L +      +    V+VPR+GIEG + L    D   + R  + HRI   GK +   +KVFDK+RV + V E +   R+  +
Sbjct:  414 RENPDGTATCVFFPVNKKIPPVLLRTTQRDRLFGQRIVVSLDSWPANSRYPLGHYVRTIGPAGDKDVETEVLLQQHDIPHEPFPAAVLACLPPEDYKISAENSPGRVDLRHLPVLSIDPPGCKDIDDALHCLVLPNGNYQVGVHIADVTHYVKPGTAMDLEAANRSTSTYLVNKRLDMLPALLTTDLCSLKCNVDRYAFSVLWEVSPDGNIIQVDFQKSIIHSIAALTYQQAQSFIDQPDDPTDIQACAVKRLAVLARKFRQRRIDAGALTLASPEVKFVLDSESLNPTDVQAYALLEANALVEEFMLLANVTVAKKILRQYPTLSVLRRHPAPNRSMFDPLISKAQSIGLSINIEDSKKLADSLDAAQVKSDPYINKLLRILSTRCMSPAQYFCSGELRASEWHHYGLAAPVYTHFTSPIRRYADVCVHRLLAASINVAPLPQHLSSKSYMHDLCTNMNRRHRAAQLAGRASVQLHTLIYFSGDGAKEEDAYVLDVDTDKGSDPSFTVMVPRYGIEGRVRL----DAAEVERFPEEHRIAWAGKTKSCSVKVFDKVRVRLSVREMQGDQRELAI 984          
BLAST of EWM28885.1 vs. NCBI_GenBank
Match: gi|566009724|gb|ETI32635.1| (hypothetical protein F443_20599 [Phytophthora parasitica P1569] >gi|568035253|gb|ETM32903.1| hypothetical protein L914_19795 [Phytophthora parasitica])

HSP 1 Score: 682.559 bits (1760), Expect = 0.000e+0
Identity = 345/601 (57.40%), Postives = 429/601 (71.38%), Query Frame = 0
Query:   11 PRRGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNAD----IVSVDFCKSIIRSVASLSYQEAQNIHDDPHAQDAVAQ------------------------GIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKD------------DPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTI---DLKGLADQGLLNRQADGHRITCPGK-VELKVFDKIRVGIRVA 567
            PR G   ++ S L VPVDR++PKI+IQTRQ++ L DKR+LVA+D+WPADS++P GHY++TLG  GDKE ET VLL E+DIP + FS++VM CLPP DW +TPEN+ GR DLR L V SIDPP CKDIDDALH   LPNGN  VGVHIADV++FV PGSALDEEAA+R TSTYLV RRLDMLP LLT  LCSLT T DHFAFSVLWEL    D    ++ V FCKS+IRSVASLSYQ+AQ   DDP A     Q                        GI+ LN++A++LRAKR+EAGAL LAS EV+FVLD ++ +PLDVQMY L++T+ALVEEFMLLANITV KKI+RH+PT S+LRRHP+PS+ +F+ L + A + G  L VD S +LQ SLDA+ DK+            +P  NK++RI+ TRCM PA YF SGE +  E+HHYGLAAPIYTHFTSPIRRYAD+VVHRLLAA+IGVAPLP  L +K  +H++++ +NRRH AAQ AGR S   HTVL+F++ P    DA I ++    + VL+PRFGIEG I   D     D+ ++      H +    K ++L+VFD++RV + VA
Sbjct:  433 PRDGALNASGSCLVVPVDRKVPKIKIQTRQQEALMDKRVLVAIDSWPADSKFPLGHYVRTLGVIGDKETETNVLLIEHDIPCDQFSDEVMRCLPPEDWKITPENSTGRRDLRDLPVCSIDPPNCKDIDDALHAQLLPNGNLQVGVHIADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDTEDHFAFSVLWELKLVGDNDVQVIDVQFCKSLIRSVASLSYQQAQEFLDDPDAGGVYGQDTKPKKKKKGGSDEEFERRQLLGSGIKTLNTIARRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQMYTLRDTNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVELHVDTSKQLQDSLDAA-DKEAAGGKRKHGSKANPYFNKLLRIMTTRCMMPASYFSSGEVAPPEFHHYGLAAPIYTHFTSPIRRYADVVVHRLLAAAIGVAPLPSYLENKSHLHEISDQLNRRHHAAQLAGRASVTLHTVLYFQQYPTRT-DAVITKVKNNGVGVLLPRFGIEGMIFLCDKDEQDDEDVVKFDGTSHTLLLVQKNLKLQVFDRVRVKVYVA 1031          
BLAST of EWM28885.1 vs. NCBI_GenBank
Match: gi|970628951|gb|KUF76372.1| (Exosome complex exonuclease RRP44 [Phytophthora nicotianae])

HSP 1 Score: 681.789 bits (1758), Expect = 0.000e+0
Identity = 345/601 (57.40%), Postives = 431/601 (71.71%), Query Frame = 0
Query:   11 PRRGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNAD----IVSVDFCKSIIRSVASLSYQEAQNIHDDPHA-----QDA-------------------VAQGIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKD------------DPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTI---DLKGLADQGLLNRQADGHRITCPGK-VELKVFDKIRVGIRVA 567
            PR G   ++ S L VPVDR++PKI+IQTRQ++ L DKR+LVA+D+WPADS++P GHY++TLG  GDKE ET VLL E+DIP + FS++VM CLPP DW +TPEN+ GR DLR L V SIDPP CKDIDDALH   LPNGN  VGVHIADV++FV PGSALDEEAA+R TSTYLV RRLDMLP LLT  LCSLT T DHFAFSVLWEL    D    ++ V FCKS+IRSVASLSYQ+AQ   DDP A     QD                    +  GI+ LN++A++LRAKR+EAGAL LAS EV+FVLD ++ +PLDVQMY L++T+ALVEEFMLLANITV KKI+RH+PT S+LRRHP+PS+ +F+ L + A + G  L VD S +LQ SLDA+ DK+            +P  NK++RI+ TRCM PA YF SGE +  E+HHYGLAAPIYTHFTSPIRRYAD+VVHRLLAA+IGVAPLP  L +K  +H++++ +NRRH AAQ AGR S   HTVL+F++ P    DA I ++    + VL+PRFGIEG I   D     D+ ++      H +    K ++L+VF+++RV + VA
Sbjct:  375 PRDGALNASGSCLVVPVDRKVPKIKIQTRQQEALMDKRVLVAIDSWPADSKFPLGHYVRTLGVIGDKETETNVLLIEHDIPCDQFSDEVMRCLPPEDWKITPENSTGRRDLRDLPVCSIDPPNCKDIDDALHAQLLPNGNLQVGVHIADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDTEDHFAFSVLWELKLVGDNDVQVIDVQFCKSLIRSVASLSYQQAQEFLDDPDAGGVYGQDTKPKKKKKGESDEEFERRQLLGSGIKTLNTIARRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQMYTLRDTNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVELHVDTSKQLQDSLDAA-DKEAAGGKRKHGSKANPYFNKLLRIMTTRCMMPASYFSSGEVAPPEFHHYGLAAPIYTHFTSPIRRYADVVVHRLLAAAIGVAPLPSYLENKSHLHEISDQLNRRHHAAQLAGRASVTLHTVLYFQQYPTRT-DAVITKVKNNGVGVLLPRFGIEGMIFLCDKDEQDDEDVVKFDGTSHTLLLVQKNLKLQVFNRVRVKVYVA 973          
BLAST of EWM28885.1 vs. NCBI_GenBank
Match: gi|570937214|gb|ETP02471.1| (hypothetical protein F441_20470 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 345/601 (57.40%), Postives = 431/601 (71.71%), Query Frame = 0
Query:   11 PRRGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNAD----IVSVDFCKSIIRSVASLSYQEAQNIHDDPHA-----QDA-------------------VAQGIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKD------------DPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTI---DLKGLADQGLLNRQADGHRITCPGK-VELKVFDKIRVGIRVA 567
            PR G   ++ S L VPVDR++PKI+IQTRQ++ L DKR+LVA+D+WPADS++P GHY++TLG  GDKE ET VLL E+DIP + FS++VM CLPP DW +TPEN+ GR DLR L V SIDPP CKDIDDALH   LPNGN  VGVHIADV++FV PGSALDEEAA+R TSTYLV RRLDMLP LLT  LCSLT T DHFAFSVLWEL    D    ++ V FCKS+IRSVASLSYQ+AQ   DDP A     QD                    +  GI+ LN++A++LRAKR+EAGAL LAS EV+FVLD ++ +PLDVQMY L++T+ALVEEFMLLANITV KKI+RH+PT S+LRRHP+PS+ +F+ L + A + G  L VD S +LQ SLDA+ DK+            +P  NK++RI+ TRCM PA YF SGE +  E+HHYGLAAPIYTHFTSPIRRYAD+VVHRLLAA+IGVAPLP  L +K  +H++++ +NRRH AAQ AGR S   HTVL+F++ P    DA I ++    + VL+PRFGIEG I   D     D+ ++      H +    K ++L+VF+++RV + VA
Sbjct:  433 PRDGALNASGSCLVVPVDRKVPKIKIQTRQQEALMDKRVLVAIDSWPADSKFPLGHYVRTLGVIGDKETETNVLLIEHDIPCDQFSDEVMRCLPPEDWKITPENSTGRRDLRDLPVCSIDPPNCKDIDDALHAQLLPNGNLQVGVHIADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDTEDHFAFSVLWELKLVGDNDVQVIDVQFCKSLIRSVASLSYQQAQEFLDDPDAGGVYGQDTKPKKKKKGESDEEFERRQLLGSGIKTLNTIARRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQMYTLRDTNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVELHVDTSKQLQDSLDAA-DKEAAGGKRKHGSKANPYFNKLLRIMTTRCMMPASYFSSGEVAPPEFHHYGLAAPIYTHFTSPIRRYADVVVHRLLAAAIGVAPLPSYLENKSHLHEISDQLNRRHHAAQLAGRASVTLHTVLYFQQYPTRT-DAVITKVKNNGVGVLLPRFGIEGMIFLCDKDEQDDEDVVKFDGTSHTLLLVQKNLKLQVFNRVRVKVYVA 1031          
BLAST of EWM28885.1 vs. NCBI_GenBank
Match: gi|570313420|gb|ETO61368.1| (hypothetical protein F444_20611, partial [Phytophthora parasitica P1976])

HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 344/601 (57.24%), Postives = 429/601 (71.38%), Query Frame = 0
Query:   11 PRRGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNAD----IVSVDFCKSIIRSVASLSYQEAQNIHDDPHAQDAVAQ------------------------GIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKD------------DPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTI---DLKGLADQGLLNRQADGHRITCPGK-VELKVFDKIRVGIRVA 567
            PR G   ++ S L VPVDR++PKI+IQTRQ++ L DKR+LVA+D+WPADS++P GHY++TLG  GDKE ET VLL E+DIP + FS++VM CLPP DW +TPEN+ GR DLR L V SIDPP CKDIDDALH   LPNGN  VGVHIADV++FV PGSALDEEAA+R TSTYLV RRLDMLP LLT  LCSLT T DHFAFSVLWEL    D    ++ V FCKS+IRSVASLSYQ+AQ   DDP A     Q                        GI+ LN++A++LRAKR+EAGAL LAS EV+FVLD ++ +PLDVQMY L++T+ALVEEFMLLANITV KKI+RH+PT S+LRRHP+PS+ +F+ L + A + G  L VD S +LQ SLDA+ DK+            +P  NK++RI+ TRCM PA YF SGE +  E+HHYGLAAPIYTHFTSPIRRYAD+VVHRLLAA+IGVAPLP  L +K  +H++++ +NRRH AAQ AGR S   HTVL+F++ P    DA I ++    + VL+PRFGIEG I   D     D+ ++      H +    K ++L+VF+++RV + VA
Sbjct:  434 PRDGALNASGSCLVVPVDRKVPKIKIQTRQQEALMDKRVLVAIDSWPADSKFPLGHYVRTLGVIGDKETETNVLLIEHDIPCDQFSDEVMRCLPPEDWKITPENSTGRRDLRDLPVCSIDPPNCKDIDDALHAQLLPNGNLQVGVHIADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDTEDHFAFSVLWELKLVGDNDVQVIDVQFCKSLIRSVASLSYQQAQEFLDDPDAGGVYGQDTKPKKKKKGESDEEFERRQLLGSGIKTLNTIARRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQMYTLRDTNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVELHVDTSKQLQDSLDAA-DKEAAGGKRKHGSKANPYFNKLLRIMTTRCMMPASYFSSGEVAPPEFHHYGLAAPIYTHFTSPIRRYADVVVHRLLAAAIGVAPLPSYLENKSHLHEISDQLNRRHHAAQLAGRASVTLHTVLYFQQYPTRT-DAVITKVKNNGVGVLLPRFGIEGMIFLCDKDEQDDEDVVKFDGTSHTLLLVQKNLKLQVFNRVRVKVYVA 1032          
BLAST of EWM28885.1 vs. NCBI_GenBank
Match: gi|675177999|ref|XP_008897884.1| (hypothetical protein PPTG_05901 [Phytophthora parasitica INRA-310] >gi|568102092|gb|ETN16774.1| hypothetical protein PPTG_05901 [Phytophthora parasitica INRA-310])

HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 344/601 (57.24%), Postives = 429/601 (71.38%), Query Frame = 0
Query:   11 PRRGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNAD----IVSVDFCKSIIRSVASLSYQEAQNIHDDPHAQDAVAQ------------------------GIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKD------------DPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTI---DLKGLADQGLLNRQADGHRITCPGK-VELKVFDKIRVGIRVA 567
            PR G   ++ S L VPVDR++PKI+IQTRQ++ L DKR+LVA+D+WPADS++P GHY++TLG  GDKE ET VLL E+DIP + FS++VM CLPP DW +TPEN+ GR DLR L V SIDPP CKDIDDALH   LPNGN  VGVHIADV++FV PGSALDEEAA+R TSTYLV RRLDMLP LLT  LCSLT T DHFAFSVLWEL    D    ++ V FCKS+IRSVASLSYQ+AQ   DDP A     Q                        GI+ LN++A++LRAKR+EAGAL LAS EV+FVLD ++ +PLDVQMY L++T+ALVEEFMLLANITV KKI+RH+PT S+LRRHP+PS+ +F+ L + A + G  L VD S +LQ SLDA+ DK+            +P  NK++RI+ TRCM PA YF SGE +  E+HHYGLAAPIYTHFTSPIRRYAD+VVHRLLAA+IGVAPLP  L +K  +H++++ +NRRH AAQ AGR S   HTVL+F++ P    DA I ++    + VL+PRFGIEG I   D     D+ ++      H +    K ++L+VF+++RV + VA
Sbjct:  433 PRDGALNASGSCLVVPVDRKVPKIKIQTRQQEALMDKRVLVAIDSWPADSKFPLGHYVRTLGVIGDKETETNVLLIEHDIPCDQFSDEVMRCLPPEDWKITPENSTGRRDLRDLPVCSIDPPNCKDIDDALHAQLLPNGNLQVGVHIADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDTEDHFAFSVLWELKLVGDNDVQVIDVQFCKSLIRSVASLSYQQAQEFLDDPDAGGVYGQDTKPKKKKKGESDEEFERRQLLGSGIKTLNTIARRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQMYTLRDTNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVELHVDTSKQLQDSLDAA-DKEAAGGKRKHGSKANPYFNKLLRIMTTRCMMPASYFSSGEVAPPEFHHYGLAAPIYTHFTSPIRRYADVVVHRLLAAAIGVAPLPSYLENKSHLHEISDQLNRRHHAAQLAGRASVTLHTVLYFQQYPTRT-DAVITKVKNNGVGVLLPRFGIEGMIFLCDKDEQDDEDVVKFDGTSHTLLLVQKNLKLQVFNRVRVKVYVA 1031          
BLAST of EWM28885.1 vs. NCBI_GenBank
Match: gi|567975912|gb|ETL26443.1| (hypothetical protein L916_19889, partial [Phytophthora parasitica])

HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 344/601 (57.24%), Postives = 429/601 (71.38%), Query Frame = 0
Query:   11 PRRGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNAD----IVSVDFCKSIIRSVASLSYQEAQNIHDDPHAQDAVAQ------------------------GIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKD------------DPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTI---DLKGLADQGLLNRQADGHRITCPGK-VELKVFDKIRVGIRVA 567
            PR G   ++ S L VPVDR++PKI+IQTRQ++ L DKR+LVA+D+WPADS++P GHY++TLG  GDKE ET VLL E+DIP + FS++VM CLPP DW +TPEN+ GR DLR L V SIDPP CKDIDDALH   LPNGN  VGVHIADV++FV PGSALDEEAA+R TSTYLV RRLDMLP LLT  LCSLT T DHFAFSVLWEL    D    ++ V FCKS+IRSVASLSYQ+AQ   DDP A     Q                        GI+ LN++A++LRAKR+EAGAL LAS EV+FVLD ++ +PLDVQMY L++T+ALVEEFMLLANITV KKI+RH+PT S+LRRHP+PS+ +F+ L + A + G  L VD S +LQ SLDA+ DK+            +P  NK++RI+ TRCM PA YF SGE +  E+HHYGLAAPIYTHFTSPIRRYAD+VVHRLLAA+IGVAPLP  L +K  +H++++ +NRRH AAQ AGR S   HTVL+F++ P    DA I ++    + VL+PRFGIEG I   D     D+ ++      H +    K ++L+VF+++RV + VA
Sbjct:  434 PRDGALNASGSCLVVPVDRKVPKIKIQTRQQEALMDKRVLVAIDSWPADSKFPLGHYVRTLGVIGDKETETNVLLIEHDIPCDQFSDEVMRCLPPEDWKITPENSTGRRDLRDLPVCSIDPPNCKDIDDALHAQLLPNGNLQVGVHIADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDTEDHFAFSVLWELKLVGDNDVQVIDVQFCKSLIRSVASLSYQQAQEFLDDPDAGGVYGQDTKPKKKKKGESDEEFERRQLLGSGIKTLNTIARRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQMYTLRDTNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVELHVDTSKQLQDSLDAA-DKEAAGGKRKHGSKANPYFNKLLRIMTTRCMMPASYFSSGEVAPPEFHHYGLAAPIYTHFTSPIRRYADVVVHRLLAAAIGVAPLPSYLENKSHLHEISDQLNRRHHAAQLAGRASVTLHTVLYFQQYPTRT-DAVITKVKNNGVGVLLPRFGIEGMIFLCDKDEQDDEDVVKFDGTSHTLLLVQKNLKLQVFNRVRVKVYVA 1032          
BLAST of EWM28885.1 vs. NCBI_GenBank
Match: gi|567947214|gb|ETK73002.1| (hypothetical protein L915_20011, partial [Phytophthora parasitica])

HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 345/601 (57.40%), Postives = 431/601 (71.71%), Query Frame = 0
Query:   11 PRRGGGGSTVSALFVPVDRRLPKIRIQTRQRDVLQDKRILVAVDAWPADSRYPAGHYIKTLGSAGDKEVETEVLLHEYDIPWEPFSEKVMACLPPSDWSMTPENTKGRVDLRKLSVMSIDPPGCKDIDDALHCTPLPNGNFAVGVHIADVSYFVQPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTSDHFAFSVLWELTPNAD----IVSVDFCKSIIRSVASLSYQEAQNIHDDPHA-----QDA-------------------VAQGIRGLNSLAKKLRAKRMEAGALMLASTEVKFVLDADSSDPLDVQMYQLKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFESLIAAAASRGFSLCVDDSSELQQSLDASVDKD------------DPNINKIIRILATRCMFPAQYFCSGECSQDEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAASIGVAPLPEALLDKGGMHDLAENMNRRHKAAQNAGRGSTAFHTVLFFKENPVEAEDAYILRILETRLIVLVPRFGIEGTI---DLKGLADQGLLNRQADGHRITCPGK-VELKVFDKIRVGIRVA 567
            PR G   ++ S L VPVDR++PKI+IQTRQ++ L DKR+LVA+D+WPADS++P GHY++TLG  GDKE ET VLL E+DIP + FS++VM CLPP DW +TPEN+ GR DLR L V SIDPP CKDIDDALH   LPNGN  VGVHIADV++FV PGSALDEEAA+R TSTYLV RRLDMLP LLT  LCSLT T DHFAFSVLWEL    D    ++ V FCKS+IRSVASLSYQ+AQ   DDP A     QD                    +  GI+ LN++A++LRAKR+EAGAL LAS EV+FVLD ++ +PLDVQMY L++T+ALVEEFMLLANITV KKI+RH+PT S+LRRHP+PS+ +F+ L + A + G  L VD S +LQ SLDA+ DK+            +P  NK++RI+ TRCM PA YF SGE +  E+HHYGLAAPIYTHFTSPIRRYAD+VVHRLLAA+IGVAPLP  L +K  +H++++ +NRRH AAQ AGR S   HTVL+F++ P    DA I ++    + VL+PRFGIEG I   D     D+ ++      H +    K ++L+VF+++RV + VA
Sbjct:  434 PRDGALNASGSCLVVPVDRKVPKIKIQTRQQEALMDKRVLVAIDSWPADSKFPLGHYVRTLGVIGDKETETNVLLIEHDIPCDQFSDEVMRCLPPEDWKITPENSTGRRDLRDLPVCSIDPPNCKDIDDALHAQLLPNGNLQVGVHIADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDTEDHFAFSVLWELKLVGDNDVQVIDVQFCKSLIRSVASLSYQQAQEFLDDPDAGGVYGQDTKPKKKKKGESDEEFERRQLLGSGIKTLNTIARRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQMYTLRDTNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVELHVDTSKQLQDSLDAA-DKEAAGGKRKHGSKANPYFNKLLRIMTTRCMMPASYFSSGEVAPPEFHHYGLAAPIYTHFTSPIRRYADVVVHRLLAAAIGVAPLPSYLENKSHLHEISDQLNRRHHAAQLAGRASVTLHTVLYFQQYPTRT-DAVITKVKNNGVGVLLPRFGIEGMIFLCDKDEQDDEDVVKFDGTSHTLLLVQKNLKLQVFNRVRVKVYVA 1032          
The following BLAST results are available for this feature:
BLAST of EWM28885.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111318|gb|EWM28885.1|0.000e+0100.00exosome complex exonuclease, partial [Nannochlorop... [more]
gi|299115727|emb|CBN74292.1|0.000e+061.23conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210514771|dbj|GAX26250.1|0.000e+057.74exosome complex exonuclease DIS3/RRP44 [Fistulifer... [more]
gi|566009724|gb|ETI32635.1|0.000e+057.40hypothetical protein F443_20599 [Phytophthora para... [more]
gi|970628951|gb|KUF76372.1|0.000e+057.40Exosome complex exonuclease RRP44 [Phytophthora ni... [more]
gi|570937214|gb|ETP02471.1|0.000e+057.40hypothetical protein F441_20470 [Phytophthora para... [more]
gi|570313420|gb|ETO61368.1|0.000e+057.24hypothetical protein F444_20611, partial [Phytopht... [more]
gi|675177999|ref|XP_008897884.1|0.000e+057.24hypothetical protein PPTG_05901 [Phytophthora para... [more]
gi|567975912|gb|ETL26443.1|0.000e+057.24hypothetical protein L916_19889, partial [Phytopht... [more]
gi|567947214|gb|ETK73002.1|0.000e+057.40hypothetical protein L915_20011, partial [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1791rna1791Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications