EWM28895.1, cds1778 (CDS) Nannochloropsis gaditana

Overview
NameEWM28895.1
Unique Namecds1778
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:111433..112173 +
Alignment locationCM002458.1:112358..113944 +
Alignment locationCM002458.1:114011..114097 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28895.1
ProductGRAM domain-containing protein
Orig transcript idgnl|cribi|Naga_100675g2.8032.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:111433..112173 +
CM002458.1supercontigCM002458.1:112358..113944 +
CM002458.1supercontigCM002458.1:114011..114097 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR004182GRAM
Homology
BLAST of EWM28895.1 vs. NCBI_GenBank
Match: gi|585111333|gb|EWM28895.1| (GRAM domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1620.91 bits (4196), Expect = 0.000e+0
Identity = 804/804 (100.00%), Postives = 804/804 (100.00%), Query Frame = 0
Query:    1 MSPRPVGEDSAFSPRAGLFWQDHGGSSGLGEDGVCFPLPDRWEGGKEEGEEGREEESLMMTTAMLPPTPSAVSAVVAASRFLHRREEMQEGGREGGREGGREGGRGLDDTMALEAVREELSVKALVSSAGTPRKGENFPAEEEELSTSHPPSRLKEGEDEGGGEDAGETVREGGEEGKEEDLSSVEEIKPFNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGSWGSTRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDRYFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKKMARMTPSLGKNVRWGPEVRHEGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAAVAVSRQPLPPLTLEDDAIIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSGESFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVVTRVGVHGDRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARVQEMKGEAIRDAKLMRDGKGGKEGESEGGKEDGGKEIEGTLAERNATGAGEVESALLEDQRGEEETMRPFSRQHTPREEEEEGRKPSLEHGSCQSCFFCRLAPSLTFKGLPALLFLVLLVVLLLLFVALVLLIFQVQRLSNRLESLQDAVSKDSCVYKERAYPHVCLRKIKLNLFNV 804
            MSPRPVGEDSAFSPRAGLFWQDHGGSSGLGEDGVCFPLPDRWEGGKEEGEEGREEESLMMTTAMLPPTPSAVSAVVAASRFLHRREEMQEGGREGGREGGREGGRGLDDTMALEAVREELSVKALVSSAGTPRKGENFPAEEEELSTSHPPSRLKEGEDEGGGEDAGETVREGGEEGKEEDLSSVEEIKPFNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGSWGSTRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDRYFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKKMARMTPSLGKNVRWGPEVRHEGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAAVAVSRQPLPPLTLEDDAIIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSGESFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVVTRVGVHGDRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARVQEMKGEAIRDAKLMRDGKGGKEGESEGGKEDGGKEIEGTLAERNATGAGEVESALLEDQRGEEETMRPFSRQHTPREEEEEGRKPSLEHGSCQSCFFCRLAPSLTFKGLPALLFLVLLVVLLLLFVALVLLIFQVQRLSNRLESLQDAVSKDSCVYKERAYPHVCLRKIKLNLFNV
Sbjct:    1 MSPRPVGEDSAFSPRAGLFWQDHGGSSGLGEDGVCFPLPDRWEGGKEEGEEGREEESLMMTTAMLPPTPSAVSAVVAASRFLHRREEMQEGGREGGREGGREGGRGLDDTMALEAVREELSVKALVSSAGTPRKGENFPAEEEELSTSHPPSRLKEGEDEGGGEDAGETVREGGEEGKEEDLSSVEEIKPFNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGSWGSTRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDRYFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKKMARMTPSLGKNVRWGPEVRHEGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAAVAVSRQPLPPLTLEDDAIIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSGESFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVVTRVGVHGDRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARVQEMKGEAIRDAKLMRDGKGGKEGESEGGKEDGGKEIEGTLAERNATGAGEVESALLEDQRGEEETMRPFSRQHTPREEEEEGRKPSLEHGSCQSCFFCRLAPSLTFKGLPALLFLVLLVVLLLLFVALVLLIFQVQRLSNRLESLQDAVSKDSCVYKERAYPHVCLRKIKLNLFNV 804          
BLAST of EWM28895.1 vs. NCBI_GenBank
Match: gi|695375637|ref|XP_009515590.1| (hypothetical protein PHYSODRAFT_309216 [Phytophthora sojae] >gi|348688501|gb|EGZ28315.1| hypothetical protein PHYSODRAFT_309216 [Phytophthora sojae])

HSP 1 Score: 154.451 bits (389), Expect = 8.835e-35
Identity = 125/480 (26.04%), Postives = 210/480 (43.75%), Query Frame = 0
Query:  164 EDAGETVREGGEEGKEEDLSSVEEIKPFNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGSWGSTRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDRYFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKKMARMTPSLGKNVRWGPEVRHEGVDAGRREQEGA---REGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAA-VAVSRQPLPPLTLEDDAIIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSG----ESFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVVTRVGVHGDRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWL-ARAKARVQEMKGE 634
            E AG  + +  E  + + L   +  K F L + E++++S+SCAL  +N   HGRLY+T   +CF  W  T  V +  E+S +EK NT   VPNA+   ++  G++ FF+SF++RD+CF +I  L                            + + + T +L  +    PE      D G    +G    R   +E       P ++  A  +       +IP  D     +PPS++A+ +A  R   PP+  E DA++    ++ DEE+A  V    +  W                          F +S L+  G   + +  W  ++   +Y+     +SF   R V Y+  +    +GP  +PT + Q Y          G       R+  ST    + VPY +YF V+ RWV +     G  C +Q+G+ + + ++ +LK  I++ T++E K  ++ WL A A+A  Q+   E
Sbjct:  784 ESAGSGMEQDEEFTEAQPLGVSDFQKKFKLDSPEQVVESFSCALYLSNFPFHGRLYLTRDRMCFSGWRDTIFVASFSEISLMEKKNTALIVPNAIEFTVK--GEKVFFTSFVFRDECFQSIQQL----------------------------RSIKKETEALMSDPAKQPEAASVDTD-GSSPPDGDSRRRRSSDEVAAVAPSPEMTPSAATD-------TIPAEDS----RPPSSLASEIAAVR--APPVIPEKDALLSEFDLMLDEEVAFSVDTAYSKLWVESDA---------------------FARSILDTAGSTNLSMPPW--KKTTVSYTAVSKPDSFDGSRLVTYTHNK-KYMVGPSVIPTAQTQRY------AYTPGS------RLVVSTTTCVSDVPYCDYFRVEHRWVFSATKNQG-ACLVQVGLRIQWSKSTWLKKQIESTTVSEAKDAVKSWLNAAAEATKQQPAAE 1182          
BLAST of EWM28895.1 vs. NCBI_GenBank
Match: gi|953486110|emb|CEG50288.1| (Uncharacterized conserved protein, contains GRAM domain [Plasmopara halstedii])

HSP 1 Score: 117.472 bits (293), Expect = 3.201e-23
Identity = 106/438 (24.20%), Postives = 180/438 (41.10%), Query Frame = 0
Query:  197 ERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGSWGSTRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDRYFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKKMARMTPSLGKNVRWGPEVRHEGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAAVAVSRQPLPPLTLEDDAIIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGRE-------EQDAYSGE---SFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVVTRVGVHGDRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARA 624
            +++++SY+CAL  +N   HGRLY+T   + F  W  T    +  E++ +EK NT   VPNA+   +R  G++ FF+SF++RD+C+ +I                      L   KK+ +  M   TP              E +D  R+      +G  E   K     L+ +A   K A +  +  +G       P S  + +A    P+ P   E D  +    +L +EE+   V      FW   +   RE                      L+A G   + +  W  +        + D + G    S+VH +            IGP  +PT + Q Y              R+ +R+  ST  + + VPY +YF V+ RWV + +    +    Q+G+ + + ++ +LK  I+  T++E K+ ++ WL  A
Sbjct:  803 DQVVESYTCALYFSNFPFHGRLYLTKDRMHFSGWRDTLFTASFSEIAAMEKKNTALIVPNAIEFTVR--GEKVFFASFVFRDECYQSI--------------------QQLRSMKKETEVLMLDPTP--------------ESLDLDRK---LFNDG--ELIRKSSSHDLAAVAPIPKKASAETTSVEGSRL----PLSVSSTLAA--HPVIP---EKDDFLDEFDLLLNEEVPFSVDTAFTRFWIESNTFSRE---------------------ILDAAGATNISLPDWTKQSVAYAAVTKLDTFDGSRLVSYVHNKKYM---------IGPSVIPTAQIQRYSY------------RKGNRLIVSTTTSVSDVPYCDYFRVEHRWVFSAMNKPSESLA-QVGLRIQWLKSTWLKKQIENTTVSEAKEAVKAWLDAA 1147          
BLAST of EWM28895.1 vs. NCBI_GenBank
Match: gi|1141975103|gb|ONK56329.1| (uncharacterized protein A4U43_C10F6890 [Asparagus officinalis])

HSP 1 Score: 110.538 bits (275), Expect = 1.801e-21
Identity = 113/490 (23.06%), Postives = 203/490 (41.43%), Query Frame = 0
Query:  191 FNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGS--WG-STRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDR-YFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKK-------MARMTPSLGKNVRWGPEVRHEGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAAVAVSRQPLPPLTLEDDA--IIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSGESFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVVTRVGVHGDRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARVQE-----MKGEAIRDAKLMRD---GKGGKEGESEGGKED 659
            F LP  E L++ ++CA    N+L+ G +Y+  H++CF S  +G  T+  +A  EV+++ KA T    PNA+ ++   TGD+ +FF SF+ RD+ +        + +V   A       ALL+H + K +         + R+T S             E +DA       A    +   ++K K +L+  +  + + +   +  +G  A +  PPS+           P +  E DA  I +  T++ + +    V +F   F    +                     +F ++  +  GD +     W   E+       SF+H  +V+         IG K    +E Q YRV             +   +   T+   + VP+ +YFHV+  W V ++    + C +++   V F +    K  I+ +T  E ++    W+  A   +++      KG A R+A +++D   G G   G  EG  E+
Sbjct:   51 FRLPKDEVLVQDFNCAF-QENILLQGHMYLFIHHICFYSNIFGFETKKTIAFHEVTYVRKAKTAAIFPNAIEII---TGDKKHFFGSFLSRDEAY--------RLIVDGWAQHNDDSRALLDHQESKSENNQDNDIVVVERVTGST------------EFIDAS----SSAERTKDANASEKCKLLLNGNSESKASENFQENQENGKHANSDNPPSSE----------PSICEELDAPEIPENFTLVIEAKFPVTVEEFFTLFISDNA--------------------SNFLENVHQRCGDKDFLSTPWRPHEKFGHARDLSFLHPVNVY---------IGAKFGRCQEVQKYRV------------FKNSHLVIETSQQVSDVPFADYFHVKRIWDVEKIAEEENSCIMRVYFNVAFSKKTMFKGKIEQSTKDELREVHAIWINNAHELLKQKNEVKQKGIADRNADMIQDQNEGAGSSSGH-EGSAEN 460          
BLAST of EWM28895.1 vs. NCBI_GenBank
Match: gi|1150746274|ref|XP_020247271.1| (protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Asparagus officinalis])

HSP 1 Score: 108.612 bits (270), Expect = 5.029e-21
Identity = 114/500 (22.80%), Postives = 207/500 (41.40%), Query Frame = 0
Query:  191 FNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGS--WG-STRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDR-YFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKK-------MARMTPSLGKNVRWGPEVRHEGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAAVAVSRQPLPPLTLEDDA--IIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSGESFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVVTRVGVHGDRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARVQE-----MKGEAIRDAKLMRD---GKGGKEGESEGGKEDGGKEIEGTLA 669
            F LP  E L++ ++CA    N+L+ G +Y+  H++CF S  +G  T+  +A  EV+++ KA T    PNA+ ++   TGD+ +FF SF+ RD+ +        + +V   A       ALL+H + K +         + R+T S             E +DA       A    +   ++K K +L+  +  + + +   +  +G  A +  PPS+           P +  E DA  I +  T++ + +    V +F   F    +                     +F ++  +  GD +     W   E+       SF+H  +V+         IG K    +E Q YRV             +   +   T+   + VP+ +YFHV+  W V ++    + C +++   V F +    K  I+ +T  E ++    W+  A   +++      KG A R+A +++D   G G   G  EG  E+    +  ++A
Sbjct:   51 FRLPKDEVLVQDFNCAF-QENILLQGHMYLFIHHICFYSNIFGFETKKTIAFHEVTYVRKAKTAAIFPNAIEII---TGDKKHFFGSFLSRDEAY--------RLIVDGWAQHNDDSRALLDHQESKSENNQDNDIVVVERVTGST------------EFIDAS----SSAERTKDANASEKCKLLLNGNSESKASENFQENQENGKHANSDNPPSSE----------PSICEELDAPEIPENFTLVIEAKFPVTVEEFFTLFISDNA--------------------SNFLENVHQRCGDKDFLSTPWRPHEKFGHARDLSFLHPVNVY---------IGAKFGRCQEVQKYRV------------FKNSHLVIETSQQVSDVPFADYFHVKRIWDVEKIAEEENSCIMRVYFNVAFSKKTMFKGKIEQSTKDELREVHAIWINNAHELLKQKNEVKQKGIADRNADMIQDQNEGAGSSSGH-EGSAENLRPTVNPSVA 470          
BLAST of EWM28895.1 vs. NCBI_GenBank
Match: gi|1150746272|ref|XP_020247269.1| (protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X1 [Asparagus officinalis])

HSP 1 Score: 108.997 bits (271), Expect = 5.477e-21
Identity = 113/490 (23.06%), Postives = 203/490 (41.43%), Query Frame = 0
Query:  191 FNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGS--WG-STRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDR-YFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKK-------MARMTPSLGKNVRWGPEVRHEGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAAVAVSRQPLPPLTLEDDA--IIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSGESFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVVTRVGVHGDRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARVQE-----MKGEAIRDAKLMRD---GKGGKEGESEGGKED 659
            F LP  E L++ ++CA    N+L+ G +Y+  H++CF S  +G  T+  +A  EV+++ KA T    PNA+ ++   TGD+ +FF SF+ RD+ +        + +V   A       ALL+H + K +         + R+T S             E +DA       A    +   ++K K +L+  +  + + +   +  +G  A +  PPS+           P +  E DA  I +  T++ + +    V +F   F    +                     +F ++  +  GD +     W   E+       SF+H  +V+         IG K    +E Q YRV             +   +   T+   + VP+ +YFHV+  W V ++    + C +++   V F +    K  I+ +T  E ++    W+  A   +++      KG A R+A +++D   G G   G  EG  E+
Sbjct:   51 FRLPKDEVLVQDFNCAF-QENILLQGHMYLFIHHICFYSNIFGFETKKTIAFHEVTYVRKAKTAAIFPNAIEII---TGDKKHFFGSFLSRDEAY--------RLIVDGWAQHNDDSRALLDHQESKSENNQDNDIVVVERVTGST------------EFIDAS----SSAERTKDANASEKCKLLLNGNSESKASENFQENQENGKHANSDNPPSSE----------PSICEELDAPEIPENFTLVIEAKFPVTVEEFFTLFISDNA--------------------SNFLENVHQRCGDKDFLSTPWRPHEKFGHARDLSFLHPVNVY---------IGAKFGRCQEVQKYRV------------FKNSHLVIETSQQVSDVPFADYFHVKRIWDVEKIAEEENSCIMRVYFNVAFSKKTMFKGKIEQSTKDELREVHAIWINNAHELLKQKNEVKQKGIADRNADMIQDQNEGAGSSSGH-EGSAEN 460          
BLAST of EWM28895.1 vs. NCBI_GenBank
Match: gi|727651920|ref|XP_010496680.1| (PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X1 [Camelina sativa] >gi|727651922|ref|XP_010496681.1| PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Camelina sativa])

HSP 1 Score: 104.375 bits (259), Expect = 1.726e-19
Identity = 119/535 (22.24%), Postives = 213/535 (39.81%), Query Frame = 0
Query:  124 ALVSSAGTPRKGENFPAEEEELSTSHPPSRLKEGEDEGGGEDAGETVRE--------GGEEGKEEDLSSVEEIKP-FNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGS--WG-STRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDRYFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKKMARMTPSLGKNVRWGPEVRHEGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAAVAVSRQPLPPLTLEDDAIIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSGESFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVVTRVGVHG-DRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARVQEMKGEAIRDAKLMRDG 645
            A++S+      G    +       S P     EG   GG  D  +            GG+  + E +S  EE +  F LPA E +++ ++CA    ++L+ G +Y+  HY+CF S  +G  T+ ++   E++ +++A T G  PNA+ ++    G +YFF+SF+ RD+ F  I     +    ++ P G    +L E   +     + R   SL        ++ +E +D   R++     G             S+L    +N  S  SI       + +P   MA+ + +     P  +    +    T + + + +  V +F   F+  G+                      F +S+ +  GD E R   W+  E+       SF H   +++         G K    +E Q +R+              +  +   T+   + VPY +YF V+  W V R      D C L + + V F +    K  I  +T+ E ++    W+  A   +++ K E  +  KL+ DG
Sbjct:    2 AMLSTTSASVSGIQIDSSASAEVVSDPTPSSPEGSRSGGSPDRHDPSTSSPSPSRGGGGDNNQSEVMSRSEEYRQLFRLPAEEVIVQDFNCAC-QESILLQGHMYLFIHYICFYSNIFGYETKKIIPFSEITCVKRAKTAGIFPNAIEILA--GGKKYFFASFLSRDEAFKLIHDGWLEYGCPVK-PEGDLQDSLSESKSQVNDGVVKRALSSL--------DLENE-LDIPLRDENLHLSGS------------SSLPVISQNGVSPSSIQR-----SAEPVEDMASSSANTFNWKPEDINAPKLSSDFTKVAEAKFSIPVEEFFRLFFSDGAV--------------------SFVESFHKNCGDKEFRCTSWQPHEKLGHTRNVSFQHPIKMYF---------GAKFGGCQESQKFRM------------YRDSHLVIETSQEISDVPYADYFTVEGVWDVKRDCRDSIDGCILDVYLNVAFSKRTVWKGKIVQSTLEECREAYAHWIRMAHELLKQKKLENQKGNKLIEDG 465          
BLAST of EWM28895.1 vs. NCBI_GenBank
Match: gi|720008907|ref|XP_010258771.1| (PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 104.375 bits (259), Expect = 2.028e-19
Identity = 153/675 (22.67%), Postives = 262/675 (38.81%), Query Frame = 0
Query:  121 SVKALVSSAGTPRKGENFPAEEEELSTSHPPSRLKEGEDEGGGEDAGETVREGGEEGKEEDLSSVEEIKPFNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGS--WG-STRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDRYFFSSFIYRDDCFDTIFSLLTKRLVGLEAPL--------GGTPAALL--EHGKKKKKKKMARMTPSLGKNVRWGPEVRH-----EGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLS----IPDGDGACAVKPPSAMAAVAVSRQPLP-----PLTLEDDAIIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSGE-SFVH-VRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVVTRVGVHGDR-CRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARVQEMKGEAIRDAKLMRDGKGGKEG-ESEGGKEDGGKEI----EGTLAERNATGAGEVESALLEDQRGEEETMRPFSRQHTPREEEEEGRKPSLEHGSCQSCFFCRLAPSLTFKGLPALLFLVLLVVLLLLFVALVLLI 760
            S++++ SS    + G +  +E   L    P  R ++        D+    R+  E      L S E  + F LP  E L++ ++CA L  N+L+ G +Y+  H++CF S  +G  T+ ++   EV+ + KA T    PNA+ ++    G +YFF+SF+ RD+ +  I     +    + A +         G+  AL+  E+ K  K++     +    K+ R   E        + +    R  E    G E+     ++PV         NA++LLS    I   + A A K P     VA S+ P+       L   D+A+                  FL SF                    R G K              E R   W   EEQ  Y+ + SF H ++  F +R    +GI       ++ ++YR               +  +   T+   + VPYG+YF VQ  W V   G  G+  C L + + V F +    +  I+ +T  E +     W+  A         E ++   L R       G E++  + D   +I    EG    RN  G  ++ S  ++  R     ++      T      +    +L       C + R     +   LP +L +  +++LLL+ +++V+L+
Sbjct:   16 SIESIPSSPLVSKSGSDSGSETSSLGVVDPSDRNEQS-------DSSVNHRKDVEIQSAASLRSEEYRQLFRLPPDEVLVQDFNCA-LQENILLQGHMYLFVHHICFYSNIFGFETKKIITFHEVTCVRKAKTAAIFPNAIEILA--GGKKYFFASFLSRDEAYRLIVDGWAQHNDRVNAQIDCQESKSDNGSQDALVIFENSKSFKRQTNDLYSMDRNKDSRVLEECNRLSNGEDDISVSTRHSETLENGEED-----LEPV--------ANAETLLSRKPFIWKPEDANAPKIPECYTLVAESKFPIQLEEFFNLFFSDEAV-----------------NFLESF------------------HTRCGAK--------------EFRCTSW--YEEQFGYARDVSFQHPIKLYFGARYGHCQGI-------QKVRVYR---------------DRHMIVETSQEISDVPYGDYFRVQGLWDVKSTGDEGNSYCILHVYINVAFSKKTMWRGKIEQSTADECRDAYSIWINNAH--------ELLKQKHLTRQEDRAANGVETDAAQVDRHTKIEESSEGLHDARNHAGHPQLASDSMDSNRQFGNPLQGILNDTTSVSSLSKELLTTL-------CSYLR-----SRSHLPLILVITSVLILLLMQLSIVVLL 574          
BLAST of EWM28895.1 vs. NCBI_GenBank
Match: gi|565498684|ref|XP_006306981.1| (hypothetical protein CARUB_v10008556mg [Capsella rubella] >gi|482575692|gb|EOA39879.1| hypothetical protein CARUB_v10008556mg [Capsella rubella])

HSP 1 Score: 103.99 bits (258), Expect = 2.134e-19
Identity = 117/489 (23.93%), Postives = 199/489 (40.70%), Query Frame = 0
Query:  174 GEEGKEEDLSSVEEIKP-FNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGS--WG-STRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDRYFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKKMARMT-PSLGKNVRWGPE----VRHEGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAAVA---VSRQPL--PPLTLEDDAIIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSGESFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVV---TRVGVHGDRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARVQEMKGEAIRDAKLMRDG 645
            G + + E +S  EE +  F LPA E L++ ++CA    ++L+ G +Y+  HY+CF S  +G  T+ V+   E+S +++A T G  PNA+ ++    G +YFF+SF+ RD+ F  I                      LE+G   K +  +++T   L   + + P+                Q+   E   +     VK  LS++    +     L IP  D    +   S++  ++   VS  P+  P  T+ED         +  +  A    K  + F      +      E  R    +G    F +S+ +  GD E R   W+  E+       SF H   V++         G K    +E Q +R+              +  +   T+   + VPY +YF V+  W V    R  + G  C L + + V F +    K  I  +T+ E ++    W+  A   +++ K E     KL+ DG
Sbjct:   62 GGDNQSEVISKSEEYRQLFRLPAEEVLVQDFNCAC-QESILLQGHMYLFIHYICFYSNIFGYETKKVIPFSEISCVKRAKTAGIFPNAIEILA--GGKKYFFASFLSRDEAFKLIHD------------------GWLEYGSAVKAEGDSQVTEQQLENTMLFTPQGFFTFSFCSSFLAYPFQDSLSESKNQVNDGVVKRALSSMDLANE-----LDIPLRDENLHLSGSSSLPVISQNGVSPSPVQRPAETVEDIMASSSANTVNWKPEAINAPKLSSDFTKVAEAKFSIPVEEFFRLFFSDGAVS-FVESFHKNCGDKEFRCTSWQPDEKLGHTRNVSFQHPIKVYF---------GAKFGGCQESQKFRM------------YRDSHLVIETSQEISDVPYADYFTVEGVWDVKRDCRDSIEG--CILDVFLNVAFSKRTVWKGKIVQSTLEECREAYAHWIRMAHELLKQKKLENQEGDKLIEDG 500          
BLAST of EWM28895.1 vs. NCBI_GenBank
Match: gi|565498686|ref|XP_006306982.1| (hypothetical protein CARUB_v10008556mg [Capsella rubella] >gi|482575693|gb|EOA39880.1| hypothetical protein CARUB_v10008556mg [Capsella rubella])

HSP 1 Score: 103.99 bits (258), Expect = 2.703e-19
Identity = 117/489 (23.93%), Postives = 199/489 (40.70%), Query Frame = 0
Query:  174 GEEGKEEDLSSVEEIKP-FNLPAGERLLKSYSCALLPNNLLIHGRLYVTPHYLCFGS--WG-STRIVLAMREVSFIEKANTMGFVPNALWVVMRETGDRYFFSSFIYRDDCFDTIFSLLTKRLVGLEAPLGGTPAALLEHGKKKKKKKMARMT-PSLGKNVRWGPE----VRHEGVDAGRREQEGAREGGEEATTKKVKPVLSTLATQEKNADSLLSIPDGDGACAVKPPSAMAAVA---VSRQPL--PPLTLEDDAIIQRMTILTDEELACGVSKFLASFWGAGSERGREGGGEGGREGGREGGKGDFYQSYLEARGDNEVRVGGWEGREEQDAYSGESFVHVRDVFYSRVRDGRGIGPKTVPTRECQMYRVEGEGGGEDGGEGREEDRVFFSTALTFTGVPYGEYFHVQTRWVV---TRVGVHGDRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARVQEMKGEAIRDAKLMRDG 645
            G + + E +S  EE +  F LPA E L++ ++CA    ++L+ G +Y+  HY+CF S  +G  T+ V+   E+S +++A T G  PNA+ ++    G +YFF+SF+ RD+ F  I                      LE+G   K +  +++T   L   + + P+                Q+   E   +     VK  LS++    +     L IP  D    +   S++  ++   VS  P+  P  T+ED         +  +  A    K  + F      +      E  R    +G    F +S+ +  GD E R   W+  E+       SF H   V++         G K    +E Q +R+              +  +   T+   + VPY +YF V+  W V    R  + G  C L + + V F +    K  I  +T+ E ++    W+  A   +++ K E     KL+ DG
Sbjct:   62 GGDNQSEVISKSEEYRQLFRLPAEEVLVQDFNCAC-QESILLQGHMYLFIHYICFYSNIFGYETKKVIPFSEISCVKRAKTAGIFPNAIEILA--GGKKYFFASFLSRDEAFKLIHD------------------GWLEYGSAVKAEGDSQVTEQQLENTMLFTPQGFFTFSFCSSFLAYPFQDSLSESKNQVNDGVVKRALSSMDLANE-----LDIPLRDENLHLSGSSSLPVISQNGVSPSPVQRPAETVEDIMASSSANTVNWKPEAINAPKLSSDFTKVAEAKFSIPVEEFFRLFFSDGAVS-FVESFHKNCGDKEFRCTSWQPDEKLGHTRNVSFQHPIKVYF---------GAKFGGCQESQKFRM------------YRDSHLVIETSQEISDVPYADYFTVEGVWDVKRDCRDSIEG--CILDVFLNVAFSKRTVWKGKIVQSTLEECREAYAHWIRMAHELLKQKKLENQEGDKLIEDG 500          
The following BLAST results are available for this feature:
BLAST of EWM28895.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111333|gb|EWM28895.1|0.000e+0100.00GRAM domain-containing protein [Nannochloropsis ga... [more]
gi|695375637|ref|XP_009515590.1|8.835e-3526.04hypothetical protein PHYSODRAFT_309216 [Phytophtho... [more]
gi|953486110|emb|CEG50288.1|3.201e-2324.20Uncharacterized conserved protein, contains GRAM d... [more]
gi|1141975103|gb|ONK56329.1|1.801e-2123.06uncharacterized protein A4U43_C10F6890 [Asparagus ... [more]
gi|1150746274|ref|XP_020247271.1|5.029e-2122.80protein VASCULAR ASSOCIATED DEATH 1, chloroplastic... [more]
gi|1150746272|ref|XP_020247269.1|5.477e-2123.06protein VASCULAR ASSOCIATED DEATH 1, chloroplastic... [more]
gi|727651920|ref|XP_010496680.1|1.726e-1922.24PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, ch... [more]
gi|720008907|ref|XP_010258771.1|2.028e-1922.67PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, ch... [more]
gi|565498684|ref|XP_006306981.1|2.134e-1923.93hypothetical protein CARUB_v10008556mg [Capsella r... [more]
gi|565498686|ref|XP_006306982.1|2.703e-1923.93hypothetical protein CARUB_v10008556mg [Capsella r... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1782rna1782Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications