EWM28921.1, cds1752 (CDS) Nannochloropsis gaditana

Overview
NameEWM28921.1
Unique Namecds1752
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:49495..49585 -
Alignment locationCM002458.1:48895..49253 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28921.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100441g5.4667.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:49495..49585 -
CM002458.1supercontigCM002458.1:48895..49253 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28921.1 vs. NCBI_GenBank
Match: gi|585111385|gb|EWM28921.1| (hypothetical protein Naga_100441g5 [Nannochloropsis gaditana])

HSP 1 Score: 292.738 bits (748), Expect = 4.279e-100
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 
Query:    1 MMISSPLDLPLSPANGTSTATSVVSDGQEKVGFTQDAMQDSGGTKHGEREDREEDWRRDREDEEGRDGEGRLRRAALAEKDYAEDNEGNGGVEESTSEVAERQEAVGSEEGGKEGEVEGAGEGPPVREEENDGTFVHLSNLRLNVRRKE 149
            MMISSPLDLPLSPANGTSTATSVVSDGQEKVGFTQDAMQDSGGTKHGEREDREEDWRRDREDEEGRDGEGRLRRAALAEKDYAEDNEGNGGVEESTSEVAERQEAVGSEEGGKEGEVEGAGEGPPVREEENDGTFVHLSNLRLNVRRKE
Sbjct:    1 MMISSPLDLPLSPANGTSTATSVVSDGQEKVGFTQDAMQDSGGTKHGEREDREEDWRRDREDEEGRDGEGRLRRAALAEKDYAEDNEGNGGVEESTSEVAERQEAVGSEEGGKEGEVEGAGEGPPVREEENDGTFVHLSNLRLNVRRKE 149
[Close]
BLAST of EWM28921.1 vs. NCBI_GenBank
Match: gi|553183839|ref|XP_005853978.1| (hypothetical protein NGA_0502400, partial [Nannochloropsis gaditana CCMP526] >gi|422295087|gb|EKU22386.1| hypothetical protein NGA_0502400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 283.493 bits (724), Expect = 1.821e-96
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MMISSPLDLPLSPANGTSTATSVVSDGQEKVGFTQDAMQDSGGTKHGEREDREEDWRRDREDEEGRDGEGRLRRAALAEKDYAEDNEGNGGVEESTSEVAERQEAVGSEEGGKEGEVEGAGEGPPVREEENDGTFVHLSNLRLN 144
            MMISSPLDLPLSPANGTSTATSVVSDGQEKVGFTQDAMQDSGGTKHGEREDREEDWRRDREDEEGRDGEGRLRRAALAEKDYAEDNEGNGGVEESTSEVAERQEAVGSEEGGKEGEVEGAGEGPPVREEENDGTFVHLSNLRLN
Sbjct:    1 MMISSPLDLPLSPANGTSTATSVVSDGQEKVGFTQDAMQDSGGTKHGEREDREEDWRRDREDEEGRDGEGRLRRAALAEKDYAEDNEGNGGVEESTSEVAERQEAVGSEEGGKEGEVEGAGEGPPVREEENDGTFVHLSNLRLN 144
The following BLAST results are available for this feature:
BLAST of EWM28921.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111385|gb|EWM28921.1|4.279e-100100.00hypothetical protein Naga_100441g5 [Nannochloropsi... [more]
gi|553183839|ref|XP_005853978.1|1.821e-96100.00hypothetical protein NGA_0502400, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1756rna1756Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications