EWM28933.1, cds1748 (CDS) Nannochloropsis gaditana

Overview
NameEWM28933.1
Unique Namecds1748
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:34486..34553 +
Alignment locationCM002458.1:34755..34853 +
Alignment locationCM002458.1:34965..35008 +
Alignment locationCM002458.1:35134..35252 +
Alignment locationCM002458.1:35344..35550 +
Alignment locationCM002458.1:35737..35792 +
Alignment locationCM002458.1:35954..36016 +
Alignment locationCM002458.1:36314..36435 +
Alignment locationCM002458.1:36626..36716 +
Alignment locationCM002458.1:36916..36952 +
Alignment locationCM002458.1:37026..37143 +
Alignment locationCM002458.1:37635..37717 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28933.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100142g4.2514.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:34486..34553 +
CM002458.1supercontigCM002458.1:34755..34853 +
CM002458.1supercontigCM002458.1:34965..35008 +
CM002458.1supercontigCM002458.1:35134..35252 +
CM002458.1supercontigCM002458.1:35344..35550 +
CM002458.1supercontigCM002458.1:35737..35792 +
CM002458.1supercontigCM002458.1:35954..36016 +
CM002458.1supercontigCM002458.1:36314..36435 +
CM002458.1supercontigCM002458.1:36626..36716 +
CM002458.1supercontigCM002458.1:36916..36952 +
CM002458.1supercontigCM002458.1:37026..37143 +
CM002458.1supercontigCM002458.1:37635..37717 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28933.1 vs. NCBI_GenBank
Match: gi|585111399|gb|EWM28933.1| (hypothetical protein Naga_100142g4 [Nannochloropsis gaditana])

HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0
Query:    1 MLTLATPRNYFSELCRITSAYQRFEETMMHHLVCMMLLTTTALIPGNAFFLSHRMRKVSWNLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQGHSVTVGARGAIEVAPLTDEKSYFVPKAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVLPSRPVVTFGRSVTFKNKEPMEGKIQKLIRWPRSRNERSGLAWYNRRERLKKYNFSKSLHVCQQQRIAAYLPHLPWSSFRGRLCPSTA 368
            MLTLATPRNYFSELCRITSAYQRFEETMMHHLVCMMLLTTTALIPGNAFFLSHRMRKVSWNLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQGHSVTVGARGAIEVAPLTDEKSYFVPKAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVLPSRPVVTFGRSVTFKNKEPMEGKIQKLIRWPRSRNERSGLAWYNRRERLKKYNFSKSLHVCQQQRIAAYLPHLPWSSFRGRLCPSTA
Sbjct:    1 MLTLATPRNYFSELCRITSAYQRFEETMMHHLVCMMLLTTTALIPGNAFFLSHRMRKVSWNLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQGHSVTVGARGAIEVAPLTDEKSYFVPKAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVLPSRPVVTFGRSVTFKNKEPMEGKIQKLIRWPRSRNERSGLAWYNRRERLKKYNFSKSLHVCQQQRIAAYLPHLPWSSFRGRLCPSTA 368          
BLAST of EWM28933.1 vs. NCBI_GenBank
Match: gi|553184085|ref|XP_005854025.1| (hypothetical protein NGA_0442400 [Nannochloropsis gaditana CCMP526] >gi|422295036|gb|EKU22335.1| hypothetical protein NGA_0442400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 372.089 bits (954), Expect = 1.054e-126
Identity = 191/213 (89.67%), Postives = 191/213 (89.67%), Query Frame = 0
Query:   55 MRKVSWNLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQGHSVTVGARGAIEVAPLTDEKSYFVPKAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAAL 267
            M KVSWNLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQG                     YFVPKAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAAL
Sbjct:    1 MMKVSWNLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQG---------------------YFVPKAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAAL 192          
BLAST of EWM28933.1 vs. NCBI_GenBank
Match: gi|922856121|gb|KOO24509.1| (hypothetical protein Ctob_002764 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 103.605 bits (257), Expect = 2.209e-21
Identity = 88/243 (36.21%), Postives = 119/243 (48.97%), Query Frame = 0
Query:   82 PVIYDGPKAEGGEVKREVGAILE--EYMLALEVGPSTLLPDER----GLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGE-GDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQGHSVT----VGARGAIEVAPLTDEKSYFVPKAGLPAKAAF-IGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVL-PSRPVVTFGRSVTFKNKEPMEGKIQKLIRW 311
            P  Y GP    GE  R V   +E  E  L LEV  S     +     GL++RL  + VE  T+  G  +CGY  G M  SP E G K+V F L +A  + F+ +EL  +  +LA   D   + GH++      G   AIE  P      YFVP     A +   IG F+NDLA+ G S  A  + Y   S ++N+  LV R+  + E+   L P+RPV T  R VTF N EPME   +  +R+
Sbjct:   85 PPPYQGPTPAPGETLRGVVCSIELPEVGLILEVAESLASGGDGQAGLGLFVRL-AEGVESVTLNEGVAMCGYAHGQMMASPDELGGKTVGFWLKTALTSFFFERELHTVASLLATGADVEAIAGHTIVRDAHTGEVQAIEADPEWAGARYFVPHTDQGALSIMNIGQFSNDLAMPGASVNAA-DGYGTDSSERNLLVLVQRMERNPERPSELRPTRPVSTLSRDVTFVNTEPMELGCEYGMRY 325          
BLAST of EWM28933.1 vs. NCBI_GenBank
Match: gi|551673797|ref|XP_005839654.1| (hypothetical protein GUITHDRAFT_133706 [Guillardia theta CCMP2712] >gi|428183817|gb|EKX52674.1| hypothetical protein GUITHDRAFT_133706 [Guillardia theta CCMP2712])

HSP 1 Score: 90.8929 bits (224), Expect = 2.413e-17
Identity = 76/228 (33.33%), Postives = 118/228 (51.75%), Query Frame = 0
Query:   85 YDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKD-VEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEV---LADLPDG-TG-LQGHSVTVG-ARGAIEVAPLTD--EKSYFVP-KAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVLPSRPVVTFGRSVTFKNKEPME 302
            Y GP     + K + G ++++  + + VG S +     GLY+ +   + V E T+  G+++ GY +     S  +GDK+V F+    +  V Y++EL+ + +     ADL D  TG + GH++    A   + V P  +     +FVP + G P   A  G+FANDLA        T+EEY   S QKN+  LVWR+    E G + P+ PVV   ++V F+N EPME
Sbjct:   23 YMGPSQS--QEKMKYGCLVQDLGIEIFVGESKVCSG-MGLYVAVAASEHVAEVTLPAGTLISGYSKEGTWSSLSQGDKAVAFAFDKPDTLVVYDRELMTLIDAAGSAADLSDNMTGAVAGHNIFFDEASQDLRVEPDVNWARGRFFVPVEDGGPVGPANFGMFANDLAY---EEGMTQEEYAR-SMQKNVLQLVWRMAV--EDGHLSPTWPVVFLNQAVCFRNAEPME 241          
BLAST of EWM28933.1 vs. NCBI_GenBank
Match: gi|1072221740|gb|OEU06522.1| (hypothetical protein FRACYDRAFT_265870 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 75.0998 bits (183), Expect = 1.985e-11
Identity = 87/333 (26.13%), Postives = 141/333 (42.34%), Query Frame = 0
Query:   28 MMHHLVCMMLLTTTALIPGNAF---------FLSHRMRKVSWNLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLI-----------------GKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAA----VFYNKELVPIFEVLADLPD------------------GTGLQGHSVTVGAR-GAIEVAPLTDEKS-YFVPKAGLPAKAAF----IGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVLPSRPVVTFGRSVTFKNKEPMEGKIQ 306
            ++ ++   +++ TT +I   +F          +  R R    +   + T I++    ++P V PV        G     E G  +EE  L +  GPS +    RGL++ +                  G  VEE  +  G+ +CGY  G       EGDKSV F      +A    VFYN+ L+ + + +  + +                     L GH+V V A  G IE+    +  S  F+P    P ++ F    +G++ANDLA   P++  T+  Y   S++ NI  LVWR+  D+  G ++P+ PVV   +     N  PME  +Q
Sbjct:    3 LLSYVALALIIDTTVIIHAFSFHQNNPYVPSIIFDRTRTF-LSCSTSTTDITS----IEPYVGPV--------GNIADMEGGIAVEELALNVLTGPSLVASGGRGLFLCIYDDEGDDDDDEDYSNNTEGGAVEEIIIPQGTPICGYARGYFTDQQ-EGDKSVGFLFNKENSANVTAVFYNQTLMTLGDAVWSVYNEEWRARAAEENNNTDDSSNNLLFGHTVKVNAETGDIEIKADQEFHSRIFIPDT--PEESQFAATSLGVYANDLAYD-PNSNETQ--YFINSEKNNILELVWRLAKDEITGTLVPTWPVVVARQDFRLLNTIPMEVGLQ 316          
BLAST of EWM28933.1 vs. NCBI_GenBank
Match: gi|551601840|ref|XP_005782536.1| (hypothetical protein EMIHUDRAFT_203578 [Emiliania huxleyi CCMP1516] >gi|485635425|gb|EOD30107.1| hypothetical protein EMIHUDRAFT_203578 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 62.3882 bits (150), Expect = 2.121e-7
Identity = 64/229 (27.95%), Postives = 94/229 (41.05%), Query Frame = 0
Query:   79 KVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSME-PSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQGHSVTVGARGAIE-VAPLTD--EKSYFVP-KAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVLPSRPVVTFGRSVTFKNKEPME 302
            +  P +YDGP    G         L+  + ++E      LP+        +G  V+  T+  G   CGY  G ME  +  EG K+V F+L SA+ +VF+ ++L  + ++LA       + GH V   A G ++ ++P  D     YFVP +         IG  +NDLAI                                   +  PSRPV T    VTF+N  PME
Sbjct:   84 QAAPPVYDGPTPAKG---------LQGLVCSVE------LPE--------VGLGVDSVTLPAGVAFCGYAAGGMEMAADSEGGKTVGFALRSADTSVFFEQQLWSVADLLAPGSGVRHIAGHEVERDAGGRVQAISPDPDWGGARYFVPSREQGDLSIMNIGQMSNDLAI-----------------------------------VARPSRPVSTLAADVTFRNSAPME 254          
BLAST of EWM28933.1 vs. NCBI_GenBank
Match: gi|551563985|ref|XP_005768595.1| (hypothetical protein EMIHUDRAFT_459195 [Emiliania huxleyi CCMP1516] >gi|485619337|gb|EOD16166.1| hypothetical protein EMIHUDRAFT_459195 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 62.3882 bits (150), Expect = 2.483e-7
Identity = 64/229 (27.95%), Postives = 94/229 (41.05%), Query Frame = 0
Query:   79 KVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSME-PSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQGHSVTVGARGAIE-VAPLTD--EKSYFVP-KAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVLPSRPVVTFGRSVTFKNKEPME 302
            +  P +YDGP    G         L+  + ++E      LP+        +G  V+  T+  G   CGY  G ME  +  EG K+V F+L SA+ +VF+ ++L  + ++LA       + GH V   A G ++ ++P  D     YFVP +         IG  +NDLAI                                   +  PSRPV T    VTF+N  PME
Sbjct:  107 QAAPPVYDGPTPAKG---------LQGLVCSVE------LPE--------VGLGVDSVTLPAGVAFCGYAAGGMEMAADSEGGKTVGFALRSADTSVFFEQQLWSVADLLAPGSGVRHIAGHEVERDAGGRVQAISPDPDWGGARYFVPSREQGDLSIMNIGQMSNDLAI-----------------------------------VARPSRPVSTLAADVTFRNSAPME 277          
The following BLAST results are available for this feature:
BLAST of EWM28933.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585111399|gb|EWM28933.1|0.000e+0100.00hypothetical protein Naga_100142g4 [Nannochloropsi... [more]
gi|553184085|ref|XP_005854025.1|1.054e-12689.67hypothetical protein NGA_0442400 [Nannochloropsis ... [more]
gi|922856121|gb|KOO24509.1|2.209e-2136.21hypothetical protein Ctob_002764 [Chrysochromulina... [more]
gi|551673797|ref|XP_005839654.1|2.413e-1733.33hypothetical protein GUITHDRAFT_133706 [Guillardia... [more]
gi|1072221740|gb|OEU06522.1|1.985e-1126.13hypothetical protein FRACYDRAFT_265870 [Fragilario... [more]
gi|551601840|ref|XP_005782536.1|2.121e-727.95hypothetical protein EMIHUDRAFT_203578 [Emiliania ... [more]
gi|551563985|ref|XP_005768595.1|2.483e-727.95hypothetical protein EMIHUDRAFT_459195 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1752rna1752Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications