EWM28927.1, cds1746 (CDS) Nannochloropsis gaditana

Overview
NameEWM28927.1
Unique Namecds1746
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:28819..28859 +
Alignment locationCM002458.1:28949..29419 +
Alignment locationCM002458.1:29514..29626 +
Alignment locationCM002458.1:29832..30016 +
Alignment locationCM002458.1:30249..30555 +
Alignment locationCM002458.1:30710..30795 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28927.1
ProductPre-mRNA polyadenylation factor Fip1
Orig transcript idgnl|cribi|Naga_100142g6.2508.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:28819..28859 +
CM002458.1supercontigCM002458.1:28949..29419 +
CM002458.1supercontigCM002458.1:29514..29626 +
CM002458.1supercontigCM002458.1:29832..30016 +
CM002458.1supercontigCM002458.1:30249..30555 +
CM002458.1supercontigCM002458.1:30710..30795 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007854Fip1
Homology
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|585111393|gb|EWM28927.1| (Pre-mRNA polyadenylation factor Fip1 [Nannochloropsis gaditana])

HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0
Query:    1 MPSTRASALSTSASSESTVPSVIEEENGSKPLVSAQAKVTTQRRASKRRALETKKSQDDGEQDLLDVVPLPAVPSLFPVLDAHGNDDEEEDEESTDEEEEEEEEESDDDITLVMTGPPRYRAFANKYIRPGLEGATGVADAEGGGAGGHDKAPGEAKEGDEDKEEEAAEARRRALAWEGFGADEEEGKEGGVGDEEEADMFTNPLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRWLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEPLPDGQVEAAGDYPPPPPFPPPPRGTPPGMMEQEMGEGMPPYPDEPPGYPPAWQRDGPNSPPPPCSLPSMAAAAP 400
            MPSTRASALSTSASSESTVPSVIEEENGSKPLVSAQAKVTTQRRASKRRALETKKSQDDGEQDLLDVVPLPAVPSLFPVLDAHGNDDEEEDEESTDEEEEEEEEESDDDITLVMTGPPRYRAFANKYIRPGLEGATGVADAEGGGAGGHDKAPGEAKEGDEDKEEEAAEARRRALAWEGFGADEEEGKEGGVGDEEEADMFTNPLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRWLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEPLPDGQVEAAGDYPPPPPFPPPPRGTPPGMMEQEMGEGMPPYPDEPPGYPPAWQRDGPNSPPPPCSLPSMAAAAP
Sbjct:    1 MPSTRASALSTSASSESTVPSVIEEENGSKPLVSAQAKVTTQRRASKRRALETKKSQDDGEQDLLDVVPLPAVPSLFPVLDAHGNDDEEEDEESTDEEEEEEEEESDDDITLVMTGPPRYRAFANKYIRPGLEGATGVADAEGGGAGGHDKAPGEAKEGDEDKEEEAAEARRRALAWEGFGADEEEGKEGGVGDEEEADMFTNPLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRWLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEPLPDGQVEAAGDYPPPPPFPPPPRGTPPGMMEQEMGEGMPPYPDEPPGYPPAWQRDGPNSPPPPCSLPSMAAAAP 400          
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|299117594|emb|CBN75436.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.8702 bits (185), Expect = 2.210e-11
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0
Query:  204 PLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRW---LAQKKEAQTA 291
            P K   + T     K  ++PPT +L+    +TAFD+DI  +EE+ W   G   AD+FNYGF E+SW +Y EKQ+R R+   + + + A++A
Sbjct:  306 PSKGAPVATAKPSLKPGEYPPTAELQQSTGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLRNRYDRTVGRSRNAKSA 396          
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|635371451|emb|CCI40374.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 73.9442 bits (180), Expect = 2.127e-10
Identity = 62/202 (30.69%), Postives = 92/202 (45.54%), Query Frame = 0
Query:  199 DMFTNPLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRW-LAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGG-------KEEPLPDGQVEAAGDYPPPPPFPPPPR---GTPPGMMEQEMGEGMPP----YPDE--PPGYPPAWQRDGP 383
            + FT   +H  + T +Q+F + D P  D +    +RTAFD+DI  +EEK W + G   ADYFNYGF E  W  Y+ KQ+++R  LA +K  + A  +    A       AE      +E  ++ G       K + + D  ++ A ++ P        R   G  PG     M   M P    +P+   PP + P W   GP
Sbjct:  608 NTFTGLPQHNPVSTSSQEFGEND-PIDDAMMFGARRTAFDVDIDMLEEKPWRKPGIDIADYFNYGFDERGWREYAAKQLKIRRELALEKAKEQAARQVSTAAVAHANANAERASKASQEGGKFNGNQANNPPKTDVVSDTPMDQANEWMPGATNNAYGREGHGIHPG-----MNTFMQPPRDWHPNMGPPPPFMPNWMHGGP 803          
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|953491257|emb|CEG45937.1| (Polyadenylation factor I complex, subunit FIP1 [Plasmopara halstedii])

HSP 1 Score: 70.8626 bits (172), Expect = 1.256e-9
Identity = 51/149 (34.23%), Postives = 68/149 (45.64%), Query Frame = 0
Query:  233 KRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRW-LAQKKEAQTAQEEEKLLASLLEAQAAEGRKYE-----------------------EEEEAEWGGKEEPLPDGQVEAAGDYPPPPPF--PPPPRGTPPGM 355
            +RTAFD+DI  +E++ W + G   +DYFNYGF E SW  Y+ +Q+RLR  LA +K  + A  +    A+    QA   R  +                       +E+  EWG     LP       G  PP   F   PPPRG  PGM
Sbjct:  178 RRTAFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYATRQLRLRRELAVEKSTEQASRQAVNAAN---QQAMRDRDAKLQIRGGGGLPPRGFSGAMKGDGVDEQTGEWGAGGNGLP-----PMGGAPPRGAFLSGPPPRGWHPGM 318          
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|325190796|emb|CCA25287.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 66.2402 bits (160), Expect = 6.108e-8
Identity = 58/211 (27.49%), Postives = 85/211 (40.28%), Query Frame = 0
Query:  199 DMFTNPLKHPAIRTYTQDF-KDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLR--WLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEPLPDGQV-----------------------EAAGDYPPPPPFPPPPRGTPPGMMEQEMGEGMPPYPDEPPGYPPAWQRDGP 383
            + FT   +H +    +QD+ ++E F   D +    +RTAFD+DI  +EEK W + G   ADYFNYGF E  W  Y+  Q+++R     +K + Q A++      +   A A    K  +E+    G +    P   V                       E  G +P    F  PPR   P M               PP + P W  +GP
Sbjct:  652 NTFTGLPQHNSADQSSQDYGENESF--DDAMVFGARRTAFDVDIDMLEEKPWRKPGIDIADYFNYGFDERGWREYAANQLKVRREIALEKAKEQAARQASTAAVAHANANAERASKASQEDGKSTGNQANNPPGADVGSDAPMNQANEWMGGAPNNAYGREGNGMHPGMNTFMQPPRDWHPNM-------------GPPPHFMPNWMHNGP 847          
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|268567670|ref|XP_002647837.1| (Hypothetical protein CBG23626 [Caenorhabditis briggsae] >gi|187040941|emb|CAP20433.1| Protein CBR-FIPP-1 [Caenorhabditis briggsae])

HSP 1 Score: 65.0846 bits (157), Expect = 8.046e-8
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0
Query:  237 FDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLR--WLAQKKEAQTA 291
            +D+D+ T+E++ W + GA   DYFNYGF EE+W LY E+Q +LR  +   +++A TA
Sbjct:  135 YDLDLATMEDRPWRKPGADITDYFNYGFTEETWNLYCERQKKLRAEFAGNQQQANTA 191          
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|695369774|ref|XP_009514140.1| (hypothetical protein PHYSODRAFT_320741 [Phytophthora sojae] >gi|348687051|gb|EGZ26865.1| hypothetical protein PHYSODRAFT_320741 [Phytophthora sojae])

HSP 1 Score: 65.0846 bits (157), Expect = 8.905e-8
Identity = 56/173 (32.37%), Postives = 75/173 (43.35%), Query Frame = 0
Query:  233 KRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRWLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEP---LPDGQVEAAGD---------------------YPPPPPFP--PPPRGT------PPGMMEQEMGEGMPPYPDEPPG 373
            +RTAFD+DI  +E++ W + G   +DYFNYGF E SW  Y+ +Q+RLR        + A E+ +  AS     AA  ++   E +A+  G   P    P    +  GD                      PP   F   PPPRG       PPG M Q+   G PP    P G
Sbjct:  177 RRTAFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYAARQLRLR-------RELAVEKSREQASRQAVSAANQQQAMRERDAKMQGGGMPPRGFPGQMKQEGGDDQNGRPGEWGPGGNGMPPMGGAPPRGGFMGGPPPRGWHPGMGPPPGFMGQQNWNG-PPMGGAPWG 341          
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|1214708598|gb|OWZ19864.1| (Pre-mRNA polyadenylation factor [Phytophthora megakarya])

HSP 1 Score: 64.3142 bits (155), Expect = 1.811e-7
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 0
Query:  233 KRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRW-LAQKKEAQTAQEEEKL 297
            +RTAFD+DI  +E++ W + G   +DYFNYGF E SW  Y+ +Q+RLR  LA +K  + A  + K+
Sbjct:  162 RRTAFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYAARQLRLRRDLAVEKSREQASRQAKM 227          
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|970660759|gb|KUF98284.1| (hypothetical protein AM588_10010857 [Phytophthora nicotianae])

HSP 1 Score: 63.929 bits (154), Expect = 2.267e-7
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 0
Query:  233 KRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLR 280
            +RTAFD+DI  +E++ W + G   +DYFNYGF E SW  Y+ +Q+RLR
Sbjct:  177 RRTAFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYAARQLRLR 224          
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|675188965|ref|XP_008903367.1| (hypothetical protein PPTG_10423 [Phytophthora parasitica INRA-310] >gi|568096838|gb|ETN11585.1| hypothetical protein PPTG_10423 [Phytophthora parasitica INRA-310])

HSP 1 Score: 63.929 bits (154), Expect = 2.328e-7
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 0
Query:  233 KRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLR 280
            +RTAFD+DI  +E++ W + G   +DYFNYGF E SW  Y+ +Q+RLR
Sbjct:  177 RRTAFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYAARQLRLR 224          
The following BLAST results are available for this feature:
BLAST of EWM28927.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111393|gb|EWM28927.1|0.000e+0100.00Pre-mRNA polyadenylation factor Fip1 [Nannochlorop... [more]
gi|299117594|emb|CBN75436.1|2.210e-1139.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|635371451|emb|CCI40374.1|2.127e-1030.69unnamed protein product [Albugo candida][more]
gi|953491257|emb|CEG45937.1|1.256e-934.23Polyadenylation factor I complex, subunit FIP1 [Pl... [more]
gi|325190796|emb|CCA25287.1|6.108e-827.49conserved hypothetical protein [Albugo laibachii N... [more]
gi|268567670|ref|XP_002647837.1|8.046e-845.61Hypothetical protein CBG23626 [Caenorhabditis brig... [more]
gi|695369774|ref|XP_009514140.1|8.905e-832.37hypothetical protein PHYSODRAFT_320741 [Phytophtho... [more]
gi|1214708598|gb|OWZ19864.1|1.811e-745.45Pre-mRNA polyadenylation factor [Phytophthora mega... [more]
gi|970660759|gb|KUF98284.1|2.267e-752.08hypothetical protein AM588_10010857 [Phytophthora ... [more]
gi|675188965|ref|XP_008903367.1|2.328e-752.08hypothetical protein PPTG_10423 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1750rna1750Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications