EWM28927.1, cds1746 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|585111393|gb|EWM28927.1| (Pre-mRNA polyadenylation factor Fip1 [Nannochloropsis gaditana]) HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0 Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0 Query: 1 MPSTRASALSTSASSESTVPSVIEEENGSKPLVSAQAKVTTQRRASKRRALETKKSQDDGEQDLLDVVPLPAVPSLFPVLDAHGNDDEEEDEESTDEEEEEEEEESDDDITLVMTGPPRYRAFANKYIRPGLEGATGVADAEGGGAGGHDKAPGEAKEGDEDKEEEAAEARRRALAWEGFGADEEEGKEGGVGDEEEADMFTNPLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRWLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEPLPDGQVEAAGDYPPPPPFPPPPRGTPPGMMEQEMGEGMPPYPDEPPGYPPAWQRDGPNSPPPPCSLPSMAAAAP 400 MPSTRASALSTSASSESTVPSVIEEENGSKPLVSAQAKVTTQRRASKRRALETKKSQDDGEQDLLDVVPLPAVPSLFPVLDAHGNDDEEEDEESTDEEEEEEEEESDDDITLVMTGPPRYRAFANKYIRPGLEGATGVADAEGGGAGGHDKAPGEAKEGDEDKEEEAAEARRRALAWEGFGADEEEGKEGGVGDEEEADMFTNPLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRWLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEPLPDGQVEAAGDYPPPPPFPPPPRGTPPGMMEQEMGEGMPPYPDEPPGYPPAWQRDGPNSPPPPCSLPSMAAAAP Sbjct: 1 MPSTRASALSTSASSESTVPSVIEEENGSKPLVSAQAKVTTQRRASKRRALETKKSQDDGEQDLLDVVPLPAVPSLFPVLDAHGNDDEEEDEESTDEEEEEEEEESDDDITLVMTGPPRYRAFANKYIRPGLEGATGVADAEGGGAGGHDKAPGEAKEGDEDKEEEAAEARRRALAWEGFGADEEEGKEGGVGDEEEADMFTNPLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRWLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEPLPDGQVEAAGDYPPPPPFPPPPRGTPPGMMEQEMGEGMPPYPDEPPGYPPAWQRDGPNSPPPPCSLPSMAAAAP 400
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|299117594|emb|CBN75436.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.8702 bits (185), Expect = 2.210e-11 Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0 Query: 204 PLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRW---LAQKKEAQTA 291 P K + T K ++PPT +L+ +TAFD+DI +EE+ W G AD+FNYGF E+SW +Y EKQ+R R+ + + + A++A Sbjct: 306 PSKGAPVATAKPSLKPGEYPPTAELQQSTGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLRNRYDRTVGRSRNAKSA 396
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|635371451|emb|CCI40374.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 73.9442 bits (180), Expect = 2.127e-10 Identity = 62/202 (30.69%), Postives = 92/202 (45.54%), Query Frame = 0 Query: 199 DMFTNPLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRW-LAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGG-------KEEPLPDGQVEAAGDYPPPPPFPPPPR---GTPPGMMEQEMGEGMPP----YPDE--PPGYPPAWQRDGP 383 + FT +H + T +Q+F + D P D + +RTAFD+DI +EEK W + G ADYFNYGF E W Y+ KQ+++R LA +K + A + A AE +E ++ G K + + D ++ A ++ P R G PG M M P +P+ PP + P W GP Sbjct: 608 NTFTGLPQHNPVSTSSQEFGEND-PIDDAMMFGARRTAFDVDIDMLEEKPWRKPGIDIADYFNYGFDERGWREYAAKQLKIRRELALEKAKEQAARQVSTAAVAHANANAERASKASQEGGKFNGNQANNPPKTDVVSDTPMDQANEWMPGATNNAYGREGHGIHPG-----MNTFMQPPRDWHPNMGPPPPFMPNWMHGGP 803
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|953491257|emb|CEG45937.1| (Polyadenylation factor I complex, subunit FIP1 [Plasmopara halstedii]) HSP 1 Score: 70.8626 bits (172), Expect = 1.256e-9 Identity = 51/149 (34.23%), Postives = 68/149 (45.64%), Query Frame = 0 Query: 233 KRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRW-LAQKKEAQTAQEEEKLLASLLEAQAAEGRKYE-----------------------EEEEAEWGGKEEPLPDGQVEAAGDYPPPPPF--PPPPRGTPPGM 355 +RTAFD+DI +E++ W + G +DYFNYGF E SW Y+ +Q+RLR LA +K + A + A+ QA R + +E+ EWG LP G PP F PPPRG PGM Sbjct: 178 RRTAFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYATRQLRLRRELAVEKSTEQASRQAVNAAN---QQAMRDRDAKLQIRGGGGLPPRGFSGAMKGDGVDEQTGEWGAGGNGLP-----PMGGAPPRGAFLSGPPPRGWHPGM 318
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|325190796|emb|CCA25287.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 66.2402 bits (160), Expect = 6.108e-8 Identity = 58/211 (27.49%), Postives = 85/211 (40.28%), Query Frame = 0 Query: 199 DMFTNPLKHPAIRTYTQDF-KDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLR--WLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEPLPDGQV-----------------------EAAGDYPPPPPFPPPPRGTPPGMMEQEMGEGMPPYPDEPPGYPPAWQRDGP 383 + FT +H + +QD+ ++E F D + +RTAFD+DI +EEK W + G ADYFNYGF E W Y+ Q+++R +K + Q A++ + A A K +E+ G + P V E G +P F PPR P M PP + P W +GP Sbjct: 652 NTFTGLPQHNSADQSSQDYGENESF--DDAMVFGARRTAFDVDIDMLEEKPWRKPGIDIADYFNYGFDERGWREYAANQLKVRREIALEKAKEQAARQASTAAVAHANANAERASKASQEDGKSTGNQANNPPGADVGSDAPMNQANEWMGGAPNNAYGREGNGMHPGMNTFMQPPRDWHPNM-------------GPPPHFMPNWMHNGP 847
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|268567670|ref|XP_002647837.1| (Hypothetical protein CBG23626 [Caenorhabditis briggsae] >gi|187040941|emb|CAP20433.1| Protein CBR-FIPP-1 [Caenorhabditis briggsae]) HSP 1 Score: 65.0846 bits (157), Expect = 8.046e-8 Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0 Query: 237 FDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLR--WLAQKKEAQTA 291 +D+D+ T+E++ W + GA DYFNYGF EE+W LY E+Q +LR + +++A TA Sbjct: 135 YDLDLATMEDRPWRKPGADITDYFNYGFTEETWNLYCERQKKLRAEFAGNQQQANTA 191
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|695369774|ref|XP_009514140.1| (hypothetical protein PHYSODRAFT_320741 [Phytophthora sojae] >gi|348687051|gb|EGZ26865.1| hypothetical protein PHYSODRAFT_320741 [Phytophthora sojae]) HSP 1 Score: 65.0846 bits (157), Expect = 8.905e-8 Identity = 56/173 (32.37%), Postives = 75/173 (43.35%), Query Frame = 0 Query: 233 KRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRWLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEP---LPDGQVEAAGD---------------------YPPPPPFP--PPPRGT------PPGMMEQEMGEGMPPYPDEPPG 373 +RTAFD+DI +E++ W + G +DYFNYGF E SW Y+ +Q+RLR + A E+ + AS AA ++ E +A+ G P P + GD PP F PPPRG PPG M Q+ G PP P G Sbjct: 177 RRTAFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYAARQLRLR-------RELAVEKSREQASRQAVSAANQQQAMRERDAKMQGGGMPPRGFPGQMKQEGGDDQNGRPGEWGPGGNGMPPMGGAPPRGGFMGGPPPRGWHPGMGPPPGFMGQQNWNG-PPMGGAPWG 341
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|1214708598|gb|OWZ19864.1| (Pre-mRNA polyadenylation factor [Phytophthora megakarya]) HSP 1 Score: 64.3142 bits (155), Expect = 1.811e-7 Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 0 Query: 233 KRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRW-LAQKKEAQTAQEEEKL 297 +RTAFD+DI +E++ W + G +DYFNYGF E SW Y+ +Q+RLR LA +K + A + K+ Sbjct: 162 RRTAFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYAARQLRLRRDLAVEKSREQASRQAKM 227
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|970660759|gb|KUF98284.1| (hypothetical protein AM588_10010857 [Phytophthora nicotianae]) HSP 1 Score: 63.929 bits (154), Expect = 2.267e-7 Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 0 Query: 233 KRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLR 280 +RTAFD+DI +E++ W + G +DYFNYGF E SW Y+ +Q+RLR Sbjct: 177 RRTAFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYAARQLRLR 224
BLAST of EWM28927.1 vs. NCBI_GenBank
Match: gi|675188965|ref|XP_008903367.1| (hypothetical protein PPTG_10423 [Phytophthora parasitica INRA-310] >gi|568096838|gb|ETN11585.1| hypothetical protein PPTG_10423 [Phytophthora parasitica INRA-310]) HSP 1 Score: 63.929 bits (154), Expect = 2.328e-7 Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 0 Query: 233 KRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLR 280 +RTAFD+DI +E++ W + G +DYFNYGF E SW Y+ +Q+RLR Sbjct: 177 RRTAFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYAARQLRLR 224 The following BLAST results are available for this feature:
BLAST of EWM28927.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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