EWM28955.1, cds1719 (CDS) Nannochloropsis gaditana

Overview
NameEWM28955.1
Unique Namecds1719
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1340320..1340367 -
Alignment locationCM002457.1:1339960..1340019 -
Alignment locationCM002457.1:1339653..1339766 -
Alignment locationCM002457.1:1339009..1339179 -
Alignment locationCM002457.1:1338691..1338841 -
Alignment locationCM002457.1:1338194..1338528 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28955.1
ProductCystathionine beta-synthase, core
Orig transcript idgnl|cribi|Naga_101130g2.7019.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1340320..1340367 -
CM002457.1supercontigCM002457.1:1339960..1340019 -
CM002457.1supercontigCM002457.1:1339653..1339766 -
CM002457.1supercontigCM002457.1:1339009..1339179 -
CM002457.1supercontigCM002457.1:1338691..1338841 -
CM002457.1supercontigCM002457.1:1338194..1338528 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR000644CBS_dom
Homology
[Close]
BLAST of EWM28955.1 vs. NCBI_GenBank
Match: gi|585111433|gb|EWM28955.1| (Cystathionine beta-synthase, core [Nannochloropsis gaditana])

HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0 
Query:    1 MEEQLYIVPLLTTYGKLVELVREHPYRGYPVVTPRQELLGLVKRRTLLLHLTRVFRGQGLMLELTQLMPLDVQLVKPLSGPLPPTSSSMLSTIPSPSGGRGRRKEKKKDRARSKAKEKAEKSAEEKAEELQALLASPIDLRKAPDISVDPSAFRVSELTPLSDVYALFDLIRCNRVFVVSYGVLVGVISRRILIDNISRLNQESQAGHPPLLFNASRAQLTAQTSLPSLRRRQNSITRQRSNQSSYVSSHSSGNDGATSVGPLRWVKERLGSAGKKREAVGKERQKPEKEGQ 292
            MEEQLYIVPLLTTYGKLVELVREHPYRGYPVVTPRQELLGLVKRRTLLLHLTRVFRGQGLMLELTQLMPLDVQLVKPLSGPLPPTSSSMLSTIPSPSGGRGRRKEKKKDRARSKAKEKAEKSAEEKAEELQALLASPIDLRKAPDISVDPSAFRVSELTPLSDVYALFDLIRCNRVFVVSYGVLVGVISRRILIDNISRLNQESQAGHPPLLFNASRAQLTAQTSLPSLRRRQNSITRQRSNQSSYVSSHSSGNDGATSVGPLRWVKERLGSAGKKREAVGKERQKPEKEGQ
Sbjct:    1 MEEQLYIVPLLTTYGKLVELVREHPYRGYPVVTPRQELLGLVKRRTLLLHLTRVFRGQGLMLELTQLMPLDVQLVKPLSGPLPPTSSSMLSTIPSPSGGRGRRKEKKKDRARSKAKEKAEKSAEEKAEELQALLASPIDLRKAPDISVDPSAFRVSELTPLSDVYALFDLIRCNRVFVVSYGVLVGVISRRILIDNISRLNQESQAGHPPLLFNASRAQLTAQTSLPSLRRRQNSITRQRSNQSSYVSSHSSGNDGATSVGPLRWVKERLGSAGKKREAVGKERQKPEKEGQ 292
The following BLAST results are available for this feature:
BLAST of EWM28955.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111433|gb|EWM28955.1|0.000e+0100.00Cystathionine beta-synthase, core [Nannochloropsis... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1723rna1723Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications