EWM28958.1, cds1714 (CDS) Nannochloropsis gaditana

Overview
NameEWM28958.1
Unique Namecds1714
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1327878..1328251 -
Alignment locationCM002457.1:1327146..1327716 -
Alignment locationCM002457.1:1326784..1326897 -
Alignment locationCM002457.1:1325334..1326470 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28958.1
ProductZinc finger, CCCH-type
Orig transcript idgnl|cribi|Naga_100308g4.5018.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1327878..1328251 -
CM002457.1supercontigCM002457.1:1327146..1327716 -
CM002457.1supercontigCM002457.1:1326784..1326897 -
CM002457.1supercontigCM002457.1:1325334..1326470 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Homology
[Close]
BLAST of EWM28958.1 vs. NCBI_GenBank
Match: gi|585111437|gb|EWM28958.1| (Zinc finger, CCCH-type [Nannochloropsis gaditana])

HSP 1 Score: 1452.19 bits (3758), Expect = 0.000e+0
Identity = 731/731 (100.00%), Postives = 731/731 (100.00%), Query Frame = 0 
Query:    1 MDRPTPPYGSREISGTGHAEVKVRRDKREDGVRGALETGASAMEKRPQQDRMPIDPATKRKICVDHVYAEEGCMRWGCPFAHVENTCGRGKAGGRKSGGNEGEEFDATRSARQDINNDDPGQQTSISTHQGMDTHKEPVSSSSLVAPREPTSSKPSTLPRGADKPRTGLRSGGQKSQTGEHTDRGDLSTGIEEQAEPRTGVADEGGGEEASGGVGEEEGALVDKIGDLYLKKAVATEKEGSGDGGGGLGPAGGSEGGISTMEAAHPPSSTVTPPPPFRLGPASLSAPQLCPGSSSRALVKQSSDPGAVPASLPVLGSGFQRMPRDIETGRRICFYFNNKGCSMGEKCAFVHVKADSSLITPGTAQKPPPGSDKLSTGPSFLPPSFPPSFHAFLPPPLPPHEARERNYPRGARRLSPPLPAGLIARSPSLEDGMSWVPHPSYFPVPQEEGRGRRVARRKERGPPLRKGKQLSESEIGDGPEEDPPEDGKAEGGEKGEGKGGDRGDVFVPSRSQESTEASPLLRQSRGGGGDGRERGRRAAGRPQEGGGAVEAREERIASSYPRSAAAPLPSHVPPHMVPTIPTPYFPPVTEGAFPPSPPVPPGAYPYAYGAAYQHPFLPPSLPSLPHASPSGVPYPAAPPYVMWYPYVAPSYDSHLSYPTAHLPPYPENPSRPGQGPREGGEDGGGGRRTLLKRQGRIMELKLRGKQTKKECLGLYDAHGLYRRGLISYTFA 731
            MDRPTPPYGSREISGTGHAEVKVRRDKREDGVRGALETGASAMEKRPQQDRMPIDPATKRKICVDHVYAEEGCMRWGCPFAHVENTCGRGKAGGRKSGGNEGEEFDATRSARQDINNDDPGQQTSISTHQGMDTHKEPVSSSSLVAPREPTSSKPSTLPRGADKPRTGLRSGGQKSQTGEHTDRGDLSTGIEEQAEPRTGVADEGGGEEASGGVGEEEGALVDKIGDLYLKKAVATEKEGSGDGGGGLGPAGGSEGGISTMEAAHPPSSTVTPPPPFRLGPASLSAPQLCPGSSSRALVKQSSDPGAVPASLPVLGSGFQRMPRDIETGRRICFYFNNKGCSMGEKCAFVHVKADSSLITPGTAQKPPPGSDKLSTGPSFLPPSFPPSFHAFLPPPLPPHEARERNYPRGARRLSPPLPAGLIARSPSLEDGMSWVPHPSYFPVPQEEGRGRRVARRKERGPPLRKGKQLSESEIGDGPEEDPPEDGKAEGGEKGEGKGGDRGDVFVPSRSQESTEASPLLRQSRGGGGDGRERGRRAAGRPQEGGGAVEAREERIASSYPRSAAAPLPSHVPPHMVPTIPTPYFPPVTEGAFPPSPPVPPGAYPYAYGAAYQHPFLPPSLPSLPHASPSGVPYPAAPPYVMWYPYVAPSYDSHLSYPTAHLPPYPENPSRPGQGPREGGEDGGGGRRTLLKRQGRIMELKLRGKQTKKECLGLYDAHGLYRRGLISYTFA
Sbjct:    1 MDRPTPPYGSREISGTGHAEVKVRRDKREDGVRGALETGASAMEKRPQQDRMPIDPATKRKICVDHVYAEEGCMRWGCPFAHVENTCGRGKAGGRKSGGNEGEEFDATRSARQDINNDDPGQQTSISTHQGMDTHKEPVSSSSLVAPREPTSSKPSTLPRGADKPRTGLRSGGQKSQTGEHTDRGDLSTGIEEQAEPRTGVADEGGGEEASGGVGEEEGALVDKIGDLYLKKAVATEKEGSGDGGGGLGPAGGSEGGISTMEAAHPPSSTVTPPPPFRLGPASLSAPQLCPGSSSRALVKQSSDPGAVPASLPVLGSGFQRMPRDIETGRRICFYFNNKGCSMGEKCAFVHVKADSSLITPGTAQKPPPGSDKLSTGPSFLPPSFPPSFHAFLPPPLPPHEARERNYPRGARRLSPPLPAGLIARSPSLEDGMSWVPHPSYFPVPQEEGRGRRVARRKERGPPLRKGKQLSESEIGDGPEEDPPEDGKAEGGEKGEGKGGDRGDVFVPSRSQESTEASPLLRQSRGGGGDGRERGRRAAGRPQEGGGAVEAREERIASSYPRSAAAPLPSHVPPHMVPTIPTPYFPPVTEGAFPPSPPVPPGAYPYAYGAAYQHPFLPPSLPSLPHASPSGVPYPAAPPYVMWYPYVAPSYDSHLSYPTAHLPPYPENPSRPGQGPREGGEDGGGGRRTLLKRQGRIMELKLRGKQTKKECLGLYDAHGLYRRGLISYTFA 731
[Close]
BLAST of EWM28958.1 vs. NCBI_GenBank
Match: gi|553185200|ref|XP_005854217.1| (hypothetical protein NGA_0196400 [Nannochloropsis gaditana CCMP526] >gi|422294842|gb|EKU22142.1| hypothetical protein NGA_0196400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1226.46 bits (3172), Expect = 0.000e+0
Identity = 639/686 (93.15%), Postives = 640/686 (93.29%), Query Frame = 0 
Query:    1 MDRPTPPYGSREISGTGHAEVKVRRDKREDGVRGALETGASAMEKRPQQDRMPIDPATKRKICVDHVYAEEGCMRWGCPFAHVENTCGRGKAGGRKSGGNEGEEFDATRSARQDINNDDPGQQTSISTHQGMDTHKEPVSSSSLVAPREPTSSKPSTLPRGADKPRTGLRSGGQKSQTGEHTDRGDLSTGIEEQAEPRTGVADEGGGEEASGGVGEEEGALVDKIGDLYLKKAVATEKEGSGDGGGGLGPAGGSEGGISTMEAAHPPSSTVTPPPPFRLGPASLSAPQLCPGSSSRALVKQSSDPGAVPASLPVLGSGFQRMPRDIETGRRICFYFNNKGCSMGEKCAFVHVKADSSLITPGTAQKPPPGSDKLSTGPSFLPPSFPPSFHAFLPPPLPPHEARERNYPRGARRLSPPLPAGLIARSPSLEDGMSWVPHPSYFPVPQEEGRGRRVARRKERGPPLRKGKQLSESEIGDGPEEDPPEDGKAEGGEKGEGKGGDRGDVFVPSRSQESTEASPLLRQSRGGGGDGRERGRRAAGRPQEGGGAVEAREERIASSYPRSAAAPLPSHVPPHMVPTIPTPYFPPVTEGAFPPSPPVPPGAYPYAYGAAYQHPFLPPSLPSLPHASPSGVPYPAAPPYVMWYPYVAPSYDSHLSYPTAHLPPYPENPSRPGQGPREGGEDGGGG 686
            MDRPTPPYGSREISGTGHAEVKVRRDKREDGVRGALETGASAMEKRPQQDRMPIDPATKRKICVDHVYAEEGCMRWGCPFAHVENTCGRGKAGGRKSGGNEGEEFDATRSARQDINNDDPGQQTSISTHQGMDTHKEPVSSSSLVAPREPTSSKPSTLPRGADKPRTGLRSGGQKSQTGEHTDRGDLSTGIEEQAEPRTGVADEGGGEEASGGVGEEEGALVDKIGDL+LKKAVATEKEGSGDGGGGLGPAGGSEGGI TMEAAHPPSSTVT PPPFRLGPASLSAPQLCPGSSSRALVKQSSDPGAVPASLPVL                                      ADSSLITPGTAQKPPPGSDKLSTG SFLPPSFPPSFHAFLPPPLPPHEARERN PRGARRLSPPLPAGLIARSPSLEDGMSWVPHPSYFPVPQEEGRGRRVARRKERGPPLRKGKQLSESEIGDGPEEDPPEDGKAEGGEKGEGKGGDRGDVFVPSRSQESTEASPLLRQSRG GGDGRERGRRAAGRPQEGGGAVEAREERIASSYPRSAAAPLPSHVPPHMVPTIPTPYFPPVTEGAFPPSPPVPPGAYPYAYGAAYQHPFLPPSLPSLPHASPSGVPYPAAPPYVMWYPYVAPSYDSHLSYPTAHLPPYPENPSRPGQGP EGGE  GGG
Sbjct:    1 MDRPTPPYGSREISGTGHAEVKVRRDKREDGVRGALETGASAMEKRPQQDRMPIDPATKRKICVDHVYAEEGCMRWGCPFAHVENTCGRGKAGGRKSGGNEGEEFDATRSARQDINNDDPGQQTSISTHQGMDTHKEPVSSSSLVAPREPTSSKPSTLPRGADKPRTGLRSGGQKSQTGEHTDRGDLSTGIEEQAEPRTGVADEGGGEEASGGVGEEEGALVDKIGDLHLKKAVATEKEGSGDGGGGLGPAGGSEGGIFTMEAAHPPSSTVTLPPPFRLGPASLSAPQLCPGSSSRALVKQSSDPGAVPASLPVL--------------------------------------ADSSLITPGTAQKPPPGSDKLSTGLSFLPPSFPPSFHAFLPPPLPPHEARERNCPRGARRLSPPLPAGLIARSPSLEDGMSWVPHPSYFPVPQEEGRGRRVARRKERGPPLRKGKQLSESEIGDGPEEDPPEDGKAEGGEKGEGKGGDRGDVFVPSRSQESTEASPLLRQSRGVGGDGRERGRRAAGRPQEGGGAVEAREERIASSYPRSAAAPLPSHVPPHMVPTIPTPYFPPVTEGAFPPSPPVPPGAYPYAYGAAYQHPFLPPSLPSLPHASPSGVPYPAAPPYVMWYPYVAPSYDSHLSYPTAHLPPYPENPSRPGQGPWEGGETEGGG 648
The following BLAST results are available for this feature:
BLAST of EWM28958.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111437|gb|EWM28958.1|0.000e+0100.00Zinc finger, CCCH-type [Nannochloropsis gaditana][more]
gi|553185200|ref|XP_005854217.1|0.000e+093.15hypothetical protein NGA_0196400 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1718rna1718Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications