EWM28960.1, cds1713 (CDS) Nannochloropsis gaditana

Overview
NameEWM28960.1
Unique Namecds1713
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1320863..1320961 +
Alignment locationCM002457.1:1321107..1321155 +
Alignment locationCM002457.1:1321326..1321524 +
Alignment locationCM002457.1:1321695..1321821 +
Alignment locationCM002457.1:1321931..1321993 +
Alignment locationCM002457.1:1322334..1322486 +
Alignment locationCM002457.1:1322760..1322816 +
Alignment locationCM002457.1:1322991..1323035 +
Alignment locationCM002457.1:1323280..1323464 +
Alignment locationCM002457.1:1323596..1323712 +
Alignment locationCM002457.1:1323870..1323895 +
Alignment locationCM002457.1:1323958..1324084 +
Alignment locationCM002457.1:1324166..1324277 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28960.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100308g6.5020.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1320863..1320961 +
CM002457.1supercontigCM002457.1:1321107..1321155 +
CM002457.1supercontigCM002457.1:1321326..1321524 +
CM002457.1supercontigCM002457.1:1321695..1321821 +
CM002457.1supercontigCM002457.1:1321931..1321993 +
CM002457.1supercontigCM002457.1:1322334..1322486 +
CM002457.1supercontigCM002457.1:1322760..1322816 +
CM002457.1supercontigCM002457.1:1322991..1323035 +
CM002457.1supercontigCM002457.1:1323280..1323464 +
CM002457.1supercontigCM002457.1:1323596..1323712 +
CM002457.1supercontigCM002457.1:1323870..1323895 +
CM002457.1supercontigCM002457.1:1323958..1324084 +
CM002457.1supercontigCM002457.1:1324166..1324277 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28960.1 vs. NCBI_GenBank
Match: gi|585111439|gb|EWM28960.1| (hypothetical protein Naga_100308g6 [Nannochloropsis gaditana])

HSP 1 Score: 913.679 bits (2360), Expect = 0.000e+0
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0
Query:    1 MPAVLFNALAMGALRGFLDTTTPLLVITAAFILDYACPAEWLSWLLPSTARTTSALLNFGVTTVLADYAATLMYAWKFFTLYPARRRATNLSEFLVWWQRAWRQERKMRARQKKQRRVIELAEDDNGASLVHPPAWPFSKDFPPPQSLPPTLWKIVSQGWSVLTRSVLYQILLLSASSLGPSLLPSAQVGRRLLQYGSAGGFFFGIIYLLGGASAHSWSVFKLDTAAALKLRPILWIVSLLVPVTAIVQVGGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTHGRDATAFVGSGAGQLFSVWMALLVFQSLRALGFAYRFWIDATCPLSAASNDGSGGRAQWPLNSWLHTFWQAFRNKDGIINRAALQLPSSVNYISRAAVGNSTNLLPVLYNLIIIFGEQSLCRVVCTRQNPGMFQITSSHFIILSLGRISQTGKGGFSMQYSFDMTQCF 452
            MPAVLFNALAMGALRGFLDTTTPLLVITAAFILDYACPAEWLSWLLPSTARTTSALLNFGVTTVLADYAATLMYAWKFFTLYPARRRATNLSEFLVWWQRAWRQERKMRARQKKQRRVIELAEDDNGASLVHPPAWPFSKDFPPPQSLPPTLWKIVSQGWSVLTRSVLYQILLLSASSLGPSLLPSAQVGRRLLQYGSAGGFFFGIIYLLGGASAHSWSVFKLDTAAALKLRPILWIVSLLVPVTAIVQVGGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTHGRDATAFVGSGAGQLFSVWMALLVFQSLRALGFAYRFWIDATCPLSAASNDGSGGRAQWPLNSWLHTFWQAFRNKDGIINRAALQLPSSVNYISRAAVGNSTNLLPVLYNLIIIFGEQSLCRVVCTRQNPGMFQITSSHFIILSLGRISQTGKGGFSMQYSFDMTQCF
Sbjct:    1 MPAVLFNALAMGALRGFLDTTTPLLVITAAFILDYACPAEWLSWLLPSTARTTSALLNFGVTTVLADYAATLMYAWKFFTLYPARRRATNLSEFLVWWQRAWRQERKMRARQKKQRRVIELAEDDNGASLVHPPAWPFSKDFPPPQSLPPTLWKIVSQGWSVLTRSVLYQILLLSASSLGPSLLPSAQVGRRLLQYGSAGGFFFGIIYLLGGASAHSWSVFKLDTAAALKLRPILWIVSLLVPVTAIVQVGGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTHGRDATAFVGSGAGQLFSVWMALLVFQSLRALGFAYRFWIDATCPLSAASNDGSGGRAQWPLNSWLHTFWQAFRNKDGIINRAALQLPSSVNYISRAAVGNSTNLLPVLYNLIIIFGEQSLCRVVCTRQNPGMFQITSSHFIILSLGRISQTGKGGFSMQYSFDMTQCF 452          
BLAST of EWM28960.1 vs. NCBI_GenBank
Match: gi|553185209|ref|XP_005854218.1| (hypothetical protein NGA_0196600, partial [Nannochloropsis gaditana CCMP526] >gi|422294843|gb|EKU22143.1| hypothetical protein NGA_0196600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 177.178 bits (448), Expect = 1.195e-50
Identity = 93/109 (85.32%), Postives = 94/109 (86.24%), Query Frame = 0
Query:  230 KLRPILWIVSLLVPVTAIVQV-------------GGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTHGRDATAFVGSGAGQLFSVWMALLVFQSLRALGFAYRFWIDA 325
            +LRPILWIVSLLVPVTAIVQV             GGGILQGAQDFDYQARLMGLCVLLSGSLLHLTT GRDATAFVGSGAGQLFSVWM LLVFQSLRALGFAYRFWIDA
Sbjct:   26 QLRPILWIVSLLVPVTAIVQVETIPHVRAQPPQVGGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTRGRDATAFVGSGAGQLFSVWMTLLVFQSLRALGFAYRFWIDA 134          
BLAST of EWM28960.1 vs. NCBI_GenBank
Match: gi|585109993|gb|EWM27720.1| (dna-damage-inducible protein f [Nannochloropsis gaditana])

HSP 1 Score: 108.997 bits (271), Expect = 1.121e-21
Identity = 107/381 (28.08%), Postives = 156/381 (40.94%), Query Frame = 0
Query:    2 PAVLFNALAMGALRGFLDTTTPLLVITAAFILDYACPAEWLSWLLPSTARTTSALLNFGVTTVLADYAATLMYAWKFFTLYPARRRATNLSEFLVWWQRAWRQERKMRARQKKQRRVIELAEDDNGASLVHPPAWPFSKDFPPPQSLPPTLWKIVSQGWSVLTRSVLYQILL----LSASSLGPSLLPSAQV----------------------------------GRRL----LQYGSAGGFFFGIIYLLGGASAHSWS------VFKLDTAAALKLRPILWIVSLLVPVTAIVQVGGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTHGRDATAFVGSGAGQLFSVWMALLVFQSLRALGFAYRFWIDATCPLSAASN 334
            PA++  A++ GALRG+LDTTTPL+V   AFI+DY+   E +    P+  +   A    G  TV+A++ +  ++  KF ++                                                   PP  P    FPP   + P    +V     +  R+VL Q LL    ++A+ +GP  + + QV                                  GR L    L++G A G    +      A+A           F  D     K+ PI+W+++++ P+  +V VGGG+LQGAQDF YQ   MGL  L +GSL  L    RD           L +VW  LL FQ +RA+ FAYRF ++   PLS  S 
Sbjct:  512 PALMLVAVSNGALRGYLDTTTPLIVAAIAFIVDYSVDPEVV---YPADPKGLGAA---GAATVIAEWLSAGLFLTKFVSM--------------------------------------------------KPPILPVLDLFPPWAEMAP----VVKASAQIFIRTVLLQALLATSCIAAARIGPLDIAAHQVALQLWIPPSFLTEAFSIAAQGLVADALGRGDRLRGRELSLLLLKWGVALGGVLAVFC----ATAQILQPDVLPRFFTEDQGILDKVHPIVWLIAIMQPINGLVNVGGGVLQGAQDFTYQVVTMGLSALFAGSLFFLL---RDEG---------LTAVWETLLAFQVMRAVLFAYRF-VEPMGPLSIVSE 815          
The following BLAST results are available for this feature:
BLAST of EWM28960.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111439|gb|EWM28960.1|0.000e+0100.00hypothetical protein Naga_100308g6 [Nannochloropsi... [more]
gi|553185209|ref|XP_005854218.1|1.195e-5085.32hypothetical protein NGA_0196600, partial [Nannoch... [more]
gi|585109993|gb|EWM27720.1|1.121e-2128.08dna-damage-inducible protein f [Nannochloropsis ga... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1717rna1717Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications