EWM28960.1, cds1713 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28960.1 vs. NCBI_GenBank
Match: gi|585111439|gb|EWM28960.1| (hypothetical protein Naga_100308g6 [Nannochloropsis gaditana]) HSP 1 Score: 913.679 bits (2360), Expect = 0.000e+0 Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0
Query: 1 MPAVLFNALAMGALRGFLDTTTPLLVITAAFILDYACPAEWLSWLLPSTARTTSALLNFGVTTVLADYAATLMYAWKFFTLYPARRRATNLSEFLVWWQRAWRQERKMRARQKKQRRVIELAEDDNGASLVHPPAWPFSKDFPPPQSLPPTLWKIVSQGWSVLTRSVLYQILLLSASSLGPSLLPSAQVGRRLLQYGSAGGFFFGIIYLLGGASAHSWSVFKLDTAAALKLRPILWIVSLLVPVTAIVQVGGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTHGRDATAFVGSGAGQLFSVWMALLVFQSLRALGFAYRFWIDATCPLSAASNDGSGGRAQWPLNSWLHTFWQAFRNKDGIINRAALQLPSSVNYISRAAVGNSTNLLPVLYNLIIIFGEQSLCRVVCTRQNPGMFQITSSHFIILSLGRISQTGKGGFSMQYSFDMTQCF 452
MPAVLFNALAMGALRGFLDTTTPLLVITAAFILDYACPAEWLSWLLPSTARTTSALLNFGVTTVLADYAATLMYAWKFFTLYPARRRATNLSEFLVWWQRAWRQERKMRARQKKQRRVIELAEDDNGASLVHPPAWPFSKDFPPPQSLPPTLWKIVSQGWSVLTRSVLYQILLLSASSLGPSLLPSAQVGRRLLQYGSAGGFFFGIIYLLGGASAHSWSVFKLDTAAALKLRPILWIVSLLVPVTAIVQVGGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTHGRDATAFVGSGAGQLFSVWMALLVFQSLRALGFAYRFWIDATCPLSAASNDGSGGRAQWPLNSWLHTFWQAFRNKDGIINRAALQLPSSVNYISRAAVGNSTNLLPVLYNLIIIFGEQSLCRVVCTRQNPGMFQITSSHFIILSLGRISQTGKGGFSMQYSFDMTQCF
Sbjct: 1 MPAVLFNALAMGALRGFLDTTTPLLVITAAFILDYACPAEWLSWLLPSTARTTSALLNFGVTTVLADYAATLMYAWKFFTLYPARRRATNLSEFLVWWQRAWRQERKMRARQKKQRRVIELAEDDNGASLVHPPAWPFSKDFPPPQSLPPTLWKIVSQGWSVLTRSVLYQILLLSASSLGPSLLPSAQVGRRLLQYGSAGGFFFGIIYLLGGASAHSWSVFKLDTAAALKLRPILWIVSLLVPVTAIVQVGGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTHGRDATAFVGSGAGQLFSVWMALLVFQSLRALGFAYRFWIDATCPLSAASNDGSGGRAQWPLNSWLHTFWQAFRNKDGIINRAALQLPSSVNYISRAAVGNSTNLLPVLYNLIIIFGEQSLCRVVCTRQNPGMFQITSSHFIILSLGRISQTGKGGFSMQYSFDMTQCF 452
BLAST of EWM28960.1 vs. NCBI_GenBank
Match: gi|553185209|ref|XP_005854218.1| (hypothetical protein NGA_0196600, partial [Nannochloropsis gaditana CCMP526] >gi|422294843|gb|EKU22143.1| hypothetical protein NGA_0196600, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 177.178 bits (448), Expect = 1.195e-50 Identity = 93/109 (85.32%), Postives = 94/109 (86.24%), Query Frame = 0
Query: 230 KLRPILWIVSLLVPVTAIVQV-------------GGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTHGRDATAFVGSGAGQLFSVWMALLVFQSLRALGFAYRFWIDA 325
+LRPILWIVSLLVPVTAIVQV GGGILQGAQDFDYQARLMGLCVLLSGSLLHLTT GRDATAFVGSGAGQLFSVWM LLVFQSLRALGFAYRFWIDA
Sbjct: 26 QLRPILWIVSLLVPVTAIVQVETIPHVRAQPPQVGGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTRGRDATAFVGSGAGQLFSVWMTLLVFQSLRALGFAYRFWIDA 134
BLAST of EWM28960.1 vs. NCBI_GenBank
Match: gi|585109993|gb|EWM27720.1| (dna-damage-inducible protein f [Nannochloropsis gaditana]) HSP 1 Score: 108.997 bits (271), Expect = 1.121e-21 Identity = 107/381 (28.08%), Postives = 156/381 (40.94%), Query Frame = 0
Query: 2 PAVLFNALAMGALRGFLDTTTPLLVITAAFILDYACPAEWLSWLLPSTARTTSALLNFGVTTVLADYAATLMYAWKFFTLYPARRRATNLSEFLVWWQRAWRQERKMRARQKKQRRVIELAEDDNGASLVHPPAWPFSKDFPPPQSLPPTLWKIVSQGWSVLTRSVLYQILL----LSASSLGPSLLPSAQV----------------------------------GRRL----LQYGSAGGFFFGIIYLLGGASAHSWS------VFKLDTAAALKLRPILWIVSLLVPVTAIVQVGGGILQGAQDFDYQARLMGLCVLLSGSLLHLTTHGRDATAFVGSGAGQLFSVWMALLVFQSLRALGFAYRFWIDATCPLSAASN 334
PA++ A++ GALRG+LDTTTPL+V AFI+DY+ E + P+ + A G TV+A++ + ++ KF ++ PP P FPP + P +V + R+VL Q LL ++A+ +GP + + QV GR L L++G A G + A+A F D K+ PI+W+++++ P+ +V VGGG+LQGAQDF YQ MGL L +GSL L RD L +VW LL FQ +RA+ FAYRF ++ PLS S
Sbjct: 512 PALMLVAVSNGALRGYLDTTTPLIVAAIAFIVDYSVDPEVV---YPADPKGLGAA---GAATVIAEWLSAGLFLTKFVSM--------------------------------------------------KPPILPVLDLFPPWAEMAP----VVKASAQIFIRTVLLQALLATSCIAAARIGPLDIAAHQVALQLWIPPSFLTEAFSIAAQGLVADALGRGDRLRGRELSLLLLKWGVALGGVLAVFC----ATAQILQPDVLPRFFTEDQGILDKVHPIVWLIAIMQPINGLVNVGGGVLQGAQDFTYQVVTMGLSALFAGSLFFLL---RDEG---------LTAVWETLLAFQVMRAVLFAYRF-VEPMGPLSIVSE 815 The following BLAST results are available for this feature:
BLAST of EWM28960.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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