EWM28969.1, cds1704 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28969.1 vs. NCBI_GenBank
Match: gi|585111454|gb|EWM28968.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana] >gi|585111455|gb|EWM28969.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana]) HSP 1 Score: 852.047 bits (2200), Expect = 0.000e+0 Identity = 416/416 (100.00%), Postives = 416/416 (100.00%), Query Frame = 0
Query: 1 MFSTVSSCRMSGWAVAIILLPTYGFAFFRNGPFVPSTPRSFSLATRLSTAKATPGDVATIDLSIMLEDGTAMPADFDTGSQVRFRLGRGGLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPADIFYTAEVHGGEGPQGFRRVDSKGEEKGTRRMGFACGMGEQRVGGKGVETRRRDRRKRQESSREVGISGVPSFLIFTLGEGGCS 416
MFSTVSSCRMSGWAVAIILLPTYGFAFFRNGPFVPSTPRSFSLATRLSTAKATPGDVATIDLSIMLEDGTAMPADFDTGSQVRFRLGRGGLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPADIFYTAEVHGGEGPQGFRRVDSKGEEKGTRRMGFACGMGEQRVGGKGVETRRRDRRKRQESSREVGISGVPSFLIFTLGEGGCS
Sbjct: 1 MFSTVSSCRMSGWAVAIILLPTYGFAFFRNGPFVPSTPRSFSLATRLSTAKATPGDVATIDLSIMLEDGTAMPADFDTGSQVRFRLGRGGLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPADIFYTAEVHGGEGPQGFRRVDSKGEEKGTRRMGFACGMGEQRVGGKGVETRRRDRRKRQESSREVGISGVPSFLIFTLGEGGCS 416
BLAST of EWM28969.1 vs. NCBI_GenBank
Match: gi|553194447|ref|XP_005855956.1| (peptide methionine sulfoxide reductase, partial [Nannochloropsis gaditana CCMP526] >gi|422293099|gb|EKU20399.1| peptide methionine sulfoxide reductase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0 Identity = 266/272 (97.79%), Postives = 268/272 (98.53%), Query Frame = 0
Query: 23 YGFAFFRNGPFVPSTPRSFSLATRLSTAKATPGDVATIDLSIMLEDGTAMPADFDTGSQVRFRLGRGGLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYR 294
Y FAFFRNGPFVPSTPRSFSLATRLS AKATPGDVATIDLSIMLEDGTAMPADFDTGSQVRFRLGRGGLPPYVHAAVEGMHVQERRTR VPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLG ++R
Sbjct: 1 YSFAFFRNGPFVPSTPRSFSLATRLSIAKATPGDVATIDLSIMLEDGTAMPADFDTGSQVRFRLGRGGLPPYVHAAVEGMHVQERRTRSVPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGWKHR 272
BLAST of EWM28969.1 vs. NCBI_GenBank
Match: gi|298707887|emb|CBJ30284.1| (peptide methionine sulfoxide reductase [Ectocarpus siliculosus]) HSP 1 Score: 213.001 bits (541), Expect = 3.954e-62 Identity = 122/285 (42.81%), Postives = 164/285 (57.54%), Query Frame = 0
Query: 55 GDVATIDLSIMLEDGTAMPADFDTGSQVRFRLGRGGLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPADIFYTAE 339
GDVA ++ S+ EDG+ FD G +V+ +G GG P++H AV M E + VPP +A+G Y PEL A + ++ P + VG ++L G A VT F +D N AG +L + + + + A+S T A GCFWGLELAFQR GVV+T AGY QG + PTYSEVCSG+TG+ EAV+VL+D + +L +F+ RHDPTQ+NGQGND GTQYR G+Y+ + QK AE+ A E S K + TE+ FY AE
Sbjct: 33 GDVAGVEYSLRTEDGSPFETRFDQG-RVKLVVGGGGFAPFLHNAVLKMEPGEEKEVTVPPKDAFGEYDPELTATLGMDSAPGDISVGTVLQLWTGQKATVTEMSGES--FKIDWNPDLAGTSLVMDVKVLEAAKAES-VLKTATFAGGCFWGLELAFQRAKGVVSTKAGYAQG-------VVKNPTYSEVCSGKTGHTEAVQVLYDPSETKYADLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQKAVAEKFFAD-EISARRLKKLATELEEVREFYDAE 305
BLAST of EWM28969.1 vs. NCBI_GenBank
Match: gi|159463298|ref|XP_001689879.1| (peptide methionine sulfoxide reductase [Chlamydomonas reinhardtii] >gi|158283867|gb|EDP09617.1| peptide methionine sulfoxide reductase [Chlamydomonas reinhardtii]) HSP 1 Score: 208.764 bits (530), Expect = 8.242e-60 Identity = 121/301 (40.20%), Postives = 175/301 (58.14%), Query Frame = 0
Query: 42 SLATRLSTAKATPGDVATIDLSIMLEDGTAMPADFDTGSQ---VRFRLGRGGLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPADIFYTAE 339
+LA R + A A GD + + L+DG+ FD+ + + F +G G + AV G+ +R + + P EAYG P +P P G++ G KV+L+NG+ A V + D + +LD NH AG+ L+ + L L+P++ AT AAGCFWG ELAFQR+PGV++T GY+ G E + PTY EVC G TG+ E V+VL+D VS++++LE FW RH+PTQLN QGND+GTQYR I+ + Q AA +SKA +A + PIVT + P + +++AE
Sbjct: 24 ALAVR-AQAGAKSGDYVQVHYTGTLDDGSV----FDSSREREPLDFIIGAGKVIKGFDTAVSGLVEGGKRKQRIEPKEAYGEKDPNAVISVPISQAPAGLEAGMKVQLSNGMVAAVAKVD--KESVTLDLNHELAGQALTFDVELMKLVPSERLQKAT--FAAGCFWGPELAFQRVPGVLSTEVGYSNG-------EAKDPTYEEVCEGTTGHAEVVQVLYDPADVSYDRLLEEFWGRHNPTQLNRQGNDVGTQYRSAIFTHTPEQLEAANKSKAAFQAK--FKDPIVTVVEPINNYHSAE 306
BLAST of EWM28969.1 vs. NCBI_GenBank
Match: gi|545372709|ref|XP_005650791.1| (PMSR-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384252772|gb|EIE26247.1| PMSR-domain-containing protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 198.749 bits (504), Expect = 5.516e-57 Identity = 120/279 (43.01%), Postives = 157/279 (56.27%), Query Frame = 0
Query: 66 LEDGTAMPADFDTGSQ---VRFRLGRGGLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPG--MKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPADIFYTAE 339
L+DGT FD+ + + F +G G + AV G+ ERR VPP+ AYG + EL IP P G K GD V+L+NG +A V + +LD N P AG+ L+ + L L A AT AAGCFWG EL FQR+PGVVAT GY+QG E PTY +VCSG TG+ EAV+V +D G+VS+E +LE FW + DPTQ+NGQG D GTQYR GIY ++ Q + AE SK+++ I TE+ ++ AE
Sbjct: 9 LDDGTV----FDSSHEREPLGFIVGSGKVIRGFDDAVIGLSKGERRKERVPPENAYGEWRSELTTSIPTSQLPEGASFKAGDNVRLSNGASAVV--KEMTSDALTLDFNPPMAGKALTFEVELVKLTKASHLHKAT--FAAGCFWGPELMFQRIPGVVATEVGYSQGQTEN-------PTYEDVCSGDTGHTEAVQVTYDSGLVSYEDLLEAFWKQIDPTQVNGQGGDRGTQYRTGIYAHNEEQLQIAEASKSKIAED--LKAAIATEVEEVQNYWAAE 270
BLAST of EWM28969.1 vs. NCBI_GenBank
Match: gi|302854433|ref|XP_002958724.1| (hypothetical protein VOLCADRAFT_109463 [Volvox carteri f. nagariensis] >gi|300255899|gb|EFJ40180.1| hypothetical protein VOLCADRAFT_109463 [Volvox carteri f. nagariensis]) HSP 1 Score: 198.749 bits (504), Expect = 1.091e-56 Identity = 117/299 (39.13%), Postives = 169/299 (56.52%), Query Frame = 0
Query: 44 ATRLSTAKATPGDVATIDLSIMLEDGTAMPADFDTG---SQVRFRLGRGGLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPADIFYTAE 339
+T + A A GD + + L+DG+ FD+ + F +G G + AV G+ V R + + P EAYG P P P G++ G KV+L+NG+ A V D + +LD NH AG+ L+ + L L+P++ AT AAGCFWG ELAFQR+PGV++T GY+ G E PTY +VC G TG+ E V+V++D S+E++LE FW RH+PTQLN QGND+GTQYR I+ + Q AA +SK ++A + +PIVT++ P + ++ AE
Sbjct: 23 STFCTRAIAKQGDYCQVHYTGTLDDGSV----FDSSRGRDPLEFVIGAGKVIKGFDLAVTGLAVGGTRKQRIEPAEAYGEADPNAVISFPISQAPDGLEPGVKVQLSNGMIATVKSVDKEK--VTLDLNHELAGKPLTFDVELMKLVPSERLQRAT--FAAGCFWGPELAFQRVPGVLSTEVGYSNGKTEN-------PTYEDVCGGDTGHAEVVQVMYDPEEASYERLLEEFWARHNPTQLNRQGNDVGTQYRSAIFTHTAEQLEAALKSKEVIQAK--FKEPIVTQVEPIENYHPAE 304
BLAST of EWM28969.1 vs. NCBI_GenBank
Match: gi|926790589|ref|XP_013903768.1| (peptide-methionine (S)-S-oxidereductase [Monoraphidium neglectum] >gi|761974691|gb|KIZ04749.1| peptide-methionine (S)-S-oxidereductase [Monoraphidium neglectum]) HSP 1 Score: 184.496 bits (467), Expect = 4.732e-51 Identity = 113/302 (37.42%), Postives = 169/302 (55.96%), Query Frame = 0
Query: 42 SLATRLSTAKATPGDVATIDLSIMLEDGTAMPADFDTG-SQVRFRLGRG-GLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEA--SGLYDKPIVTEILPADIFYTAE 339
+L S AKA GD T+ + L+DG+ + G + + F++G G G AV G+ V E R + P+E YG PE +PA+ P G+ GD+V L+NG+ A V++ DP+ G ++D N AG+ L+ + L L+ A T+ AGCFWG +L F R+PGV++T GY+QG + P+Y +VCSG TG+ E V+V++D V+F ++L+ FW +HDPT + QG D GTQYR GIY T++ Q A+E+ +EA + + I TE+ P + AE
Sbjct: 28 TLCVTASQAKAAEGDFVTVHYTGTLDDGSVFDSSRQDGRAPLEFQIGAGRGF----DKAVTGLAVGETRKVRLTPEEGYGERDPEAVITVPADRAPKGLSEGDRVGLSNGMQAVVSKVDPS-GDVTIDLNPELAGKHLTFDVELMSLIQAAGA--QTIVFGAGCFWGPQLLFDRVPGVISTEVGYSQG-------KVPNPSYEDVCSGTTGHTEVVKVVYDPDAVTFGQLLDTFWAKHDPTSKDRQGADSGTQYRAGIYTTTEEQ---AQEAARYIEAKRAAMPGLKIYTELEPLKEYSAAE 312
BLAST of EWM28969.1 vs. NCBI_GenBank
Match: gi|546303349|ref|XP_005711994.1| (peptide methionine sulfoxide reductase [Chondrus crispus] >gi|507108347|emb|CDF32329.1| peptide methionine sulfoxide reductase [Chondrus crispus]) HSP 1 Score: 182.956 bits (463), Expect = 1.002e-48 Identity = 118/298 (39.60%), Postives = 155/298 (52.01%), Query Frame = 0
Query: 52 ATPGDVATIDLSIMLEDGTAMPADFDTGSQVRFRLGRGGLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPGMKV--GDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLL----HDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQL--NGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPAD--IFYTAE 339
A GD + + L+DG+ + + G+ + F +G G + AV G+ V E R + + YG ++ IP P GM+V G KV L+NG+ A V D + LD NH AG+ L+ + L ++ P GCFWG ELAFQR+ GVVAT GYT G E PTY +VCSGRTG+ EAV V FD VSFE+++EVFW R + + N GND+GTQYR GIY S Q+R AEESK + A + K V EI A+ FY AE
Sbjct: 68 AGDGDGVQVHYTGFLDDGSQFDSSRERGTPLSFVVGAGTVIRGFDDAVRGLQVGESRRTRIEAERGYGERSDDMVVKIPRSRVPEGMEVVVGSKVPLSNGMMAVVLGADAEE--IELDANHELAGKALTFDMELVGFEEGVLGEVGPGMERAVFGLGCFWGAELAFQRVAGVVATRVGYTHGQTE-------KPTYEQVCSGRTGHAEAVAVDFDPARVSFEQLVEVFWERLGQSAMTPNQVGNDVGTQYRSGIYVQSSEQERVAEESKRK--ARERFGKDTVVEIESAEGVPFYLAE 354
BLAST of EWM28969.1 vs. NCBI_GenBank
Match: gi|1064092789|gb|ODT94201.1| (peptide-methionine (S)-S-oxide reductase [Sphingobacteriales bacterium SCN 48-20] >gi|1113378455|gb|OJW41719.1| peptide-methionine (S)-S-oxide reductase [Sphingobacteriales bacterium 48-107]) HSP 1 Score: 169.088 bits (427), Expect = 1.107e-46 Identity = 76/144 (52.78%), Postives = 99/144 (68.75%), Query Frame = 0
Query: 196 TVHLAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPADIFYTAE 339
T LA GCFW E F++L GV++ +GYT G + + PTY EVCSG TG+ E +++++D +SF+++LEVFW HDPT LN QGND+GTQYR G+YY +D QK AE KA L+ SG +DKPIVTEI P +FY AE
Sbjct: 46 TATLANGCFWCTEAIFEQLEGVISATSGYTDG-------QTKNPTYKEVCSGETGHAECLQIVYDPSKISFDELLEVFWKTHDPTTLNRQGNDVGTQYRSGVYYHNDEQKEKAEHYKAELDKSGAFDKPIVTEIKPFSVFYPAE 182
BLAST of EWM28969.1 vs. NCBI_GenBank
Match: gi|659867608|ref|WP_029914519.1| (peptide-methionine (S)-S-oxide reductase [Pelobacter seleniigenes]) HSP 1 Score: 163.31 bits (412), Expect = 2.247e-45 Identity = 84/158 (53.16%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 199 LAAGCFWGLELAFQRLPGVVATAAGYTQGGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPADIFYTAEVHGGEGPQGFRRVDSKG 356
AAGCFWG+E AF+ LPGVV TA GY G E PTY +VCSG TG+ E VEV+FD +S+ ++LE FW +H+PT LN QG D+GTQYR I+Y S Q+R AEE+K LEASG+Y +P+VTEI+PA F+ AE E Q + R S G
Sbjct: 6 FAAGCFWGVEEAFRTLPGVVETAVGYMGGTTE-------QPTYQQVCSGATGHAEVVEVIFDPAQISYGQLLERFWGKHNPTSLNRQGWDIGTQYRSAIFYHSAEQRRQAEEAKRALEASGVYTEPVVTEIVPAGTFWRAE----EYHQQYIRKQSPG 152 The following BLAST results are available for this feature:
BLAST of EWM28969.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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