EWM28973.1, cds1699 (CDS) Nannochloropsis gaditana

Overview
NameEWM28973.1
Unique Namecds1699
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1291676..1292569 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28973.1
Productlipoate-protein ligase b
Orig transcript idgnl|cribi|Naga_100773g2.7443.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1291676..1292569 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0016415octanoyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0006464cellular protein modification process
GO:0009107lipoate biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR020605Octanoyltransferase_CS
IPR004143BPL_LPL_catalytic
IPR000544Octanoyltransferase
Homology
BLAST of EWM28973.1 vs. NCBI_GenBank
Match: gi|585111462|gb|EWM28973.1| (lipoate-protein ligase b [Nannochloropsis gaditana])

HSP 1 Score: 608.216 bits (1567), Expect = 0.000e+0
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query:    1 MIRQRTGTHSKNILWLSSRLPAHSCWLLILFSQILFINAFPTIPPPPSTRLSDALSFSPLPSHARDPVLLHDWSDRLTPYQDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVALDSVQD 297
            MIRQRTGTHSKNILWLSSRLPAHSCWLLILFSQILFINAFPTIPPPPSTRLSDALSFSPLPSHARDPVLLHDWSDRLTPYQDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVALDSVQD
Sbjct:    1 MIRQRTGTHSKNILWLSSRLPAHSCWLLILFSQILFINAFPTIPPPPSTRLSDALSFSPLPSHARDPVLLHDWSDRLTPYQDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVALDSVQD 297          
BLAST of EWM28973.1 vs. NCBI_GenBank
Match: gi|553194454|ref|XP_005855958.1| (lipoyl(octanoyl) transferase [Nannochloropsis gaditana CCMP526] >gi|422293101|gb|EKU20401.1| lipoyl(octanoyl) transferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 441.039 bits (1133), Expect = 3.948e-155
Identity = 215/217 (99.08%), Postives = 216/217 (99.54%), Query Frame = 0
Query:   81 QDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVALDSVQD 297
            +DAWDTQHRLVDGKLASLADSSH KAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVALDSVQD
Sbjct:    7 KDAWDTQHRLVDGKLASLADSSHEKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVALDSVQD 223          
BLAST of EWM28973.1 vs. NCBI_GenBank
Match: gi|873239171|emb|CEL94587.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 265.003 bits (676), Expect = 5.558e-84
Identity = 130/224 (58.04%), Postives = 163/224 (72.77%), Query Frame = 0
Query:   70 LHDWSDRLTPYQDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVALD 293
             +D  +   PY+ +WD QHRL+D  +  LA  + G    D  +L+QHPP +TLGT ST  NIL   ND  + P  +F+TERGGE T+HGPGQLV YP++DLRH+KQDLHWYLR+LEEV+IRTL  LGV G R EGLTGVWVEGRKVAA+GV+V++W+TMHGVALN+DP M +F  IVPCGI DRPVGS++E   R G T     + V  L++ +F EVFGV L+
Sbjct:  109 FYDMWNETVPYEASWDLQHRLMDAMVDELA--ADGCTRRDMAILLQHPPVFTLGTASTEHNILATGNDTDDDPIPVFRTERGGEVTYHGPGQLVLYPIVDLRHHKQDLHWYLRSLEEVIIRTLERLGVEGERIEGLTGVWVEGRKVAAIGVRVRKWVTMHGVALNVDPNMAHFERIVPCGISDRPVGSVRECV-RDGVT----TERVAGLLMDSFAEVFGVQLE 325          
BLAST of EWM28973.1 vs. NCBI_GenBank
Match: gi|499175658|ref|WP_010873245.1| (octanoyltransferase [Synechocystis sp. PCC 6803] >gi|3122377|sp|P74519.1|LIPB_SYNY3 RecName: Full=Octanoyltransferase; AltName: Full=Lipoate-protein ligase B; AltName: Full=Lipoyl/octanoyl transferase; AltName: Full=Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase >gi|1653711|dbj|BAA18623.1| LipB protein [Synechocystis sp. PCC 6803] >gi|339274313|dbj|BAK50800.1| lipoate-protein ligase B [Synechocystis sp. PCC 6803] >gi|359272279|dbj|BAL29798.1| lipoate-protein ligase B [Synechocystis sp. PCC 6803 substr. GT-I] >gi|359275449|dbj|BAL32967.1| lipoate-protein ligase B [Synechocystis sp. PCC 6803 substr. PCC-N] >gi|359278619|dbj|BAL36136.1| lipoate-protein ligase B [Synechocystis sp. PCC 6803 substr. PCC-P] >gi|451781342|gb|AGF52311.1| LipB protein [Synechocystis sp. PCC 6803] >gi|939196921|gb|ALJ68253.1| octanoyltransferase [Synechocystis sp. PCC 6803])

HSP 1 Score: 219.935 bits (559), Expect = 8.152e-68
Identity = 116/215 (53.95%), Postives = 141/215 (65.58%), Query Frame = 0
Query:   77 LTPYQDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVA 291
            L PY  AW  Q R V  K          +   D L+L++HPP YTLGTGS    + FDP  P   PA L++TERGGE T+H PGQLV YP+LDL H+++DLHWYLR LEEV+I TL  L ++G R  GLTGVW+EG KVAA+ +KV  W+T HG ALNI P +E F HIVPCGIGDRPVGSL +          L V+ V PL+++AF EVF V 
Sbjct:   13 LVPYCQAWQYQRRWVRAK-------QRDRQREDGLMLLEHPPVYTLGTGSQTKYLKFDPAYP---PAELWRTERGGEVTYHCPGQLVGYPILDLNHFQKDLHWYLRQLEEVLIITLEKLDLQGERIAGLTGVWLEGHKVAAIAIKVSGWVTCHGFALNICPDLEGFSHIVPCGIGDRPVGSLNQF------LPGLTVEIVQPLVIQAFAEVFPVT 211          
BLAST of EWM28973.1 vs. NCBI_GenBank
Match: gi|1180691310|ref|WP_084176480.1| (lipoyl(octanoyl) transferase [Limnothrix rosea])

HSP 1 Score: 219.55 bits (558), Expect = 9.003e-68
Identity = 112/199 (56.28%), Postives = 136/199 (68.34%), Query Frame = 0
Query:   62 SHARDPVLLHDWSDRLTPYQDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQE 260
             H  +P L+  WS    PY  AW  Q  LVD  L             D LLL++HPP YTLGTGS  + + FDP +  N    L++TERGGE T+H P QLV YP+L+L+ +++DLHWYLR LEEV+I+ LA  G+RG R EGLTGVWVEGRKVAA+G+KVKRWITMHG ALN+ P +  F  IVPCGIGDRPVGSL +
Sbjct:    9 QHLLNPCLVKQWSR--VPYGVAWQWQRELVDNHLQCFHYP-------DRLLLLEHPPVYTLGTGSDEAFLRFDPTEDTNL---LYRTERGGEVTYHCPDQLVGYPILNLQRHQRDLHWYLRQLEEVIIQLLAVYGLRGDRLEGLTGVWVEGRKVAAIGIKVKRWITMHGFALNVCPDLTGFTKIVPCGIGDRPVGSLAQ 195          
BLAST of EWM28973.1 vs. NCBI_GenBank
Match: gi|1115255654|gb|OKH20049.1| (lipoyl(octanoyl) transferase [Limnothrix rosea IAM M-220])

HSP 1 Score: 219.55 bits (558), Expect = 1.016e-67
Identity = 112/199 (56.28%), Postives = 136/199 (68.34%), Query Frame = 0
Query:   62 SHARDPVLLHDWSDRLTPYQDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQE 260
             H  +P L+  WS    PY  AW  Q  LVD  L             D LLL++HPP YTLGTGS  + + FDP +  N    L++TERGGE T+H P QLV YP+L+L+ +++DLHWYLR LEEV+I+ LA  G+RG R EGLTGVWVEGRKVAA+G+KVKRWITMHG ALN+ P +  F  IVPCGIGDRPVGSL +
Sbjct:    7 QHLLNPCLVKQWSR--VPYGVAWQWQRELVDNHLQCFHYP-------DRLLLLEHPPVYTLGTGSDEAFLRFDPTEDTNL---LYRTERGGEVTYHCPDQLVGYPILNLQRHQRDLHWYLRQLEEVIIQLLAVYGLRGDRLEGLTGVWVEGRKVAAIGIKVKRWITMHGFALNVCPDLTGFTKIVPCGIGDRPVGSLAQ 193          
BLAST of EWM28973.1 vs. NCBI_GenBank
Match: gi|1180117300|ref|WP_083636685.1| (lipoyl(octanoyl) transferase [Oscillatoriales cyanobacterium 'hensonii'])

HSP 1 Score: 220.705 bits (561), Expect = 1.100e-67
Identity = 116/221 (52.49%), Postives = 141/221 (63.80%), Query Frame = 0
Query:   77 LTPYQDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVALDSVQD 297
            LTPY  AW  Q  LV       AD        D LLL++HPP YTLG G++P  + FDP   +     +++ ERGGE T+H PGQ++ YP+L+L  Y+QDLHWYLR LEEV+IR LA  G+ G R  G TGVW+EGRKVAA+G+KV RWITMHG ALN+ P +E FRHIVPCGIGD+PVGSL E          +Q   V   +  AF EVFGV L    D
Sbjct:   31 LTPYAMAWQWQQALV-------ADRRANPNLEDVLLLLEHPPVYTLGQGASPDFLKFDPAASE---VQVWRVERGGEVTYHCPGQIIGYPILNLHQYRQDLHWYLRQLEEVLIRVLAGYGLSGERLAGFTGVWLEGRKVAAIGIKVSRWITMHGFALNVCPDLEGFRHIVPCGIGDKPVGSLAEF------VPGIQPDQVRVAIAVAFSEVFGVTLKEPDD 235          
BLAST of EWM28973.1 vs. NCBI_GenBank
Match: gi|1057119267|ref|WP_068515019.1| (octanoyltransferase [Leptolyngbya sp. O-77])

HSP 1 Score: 217.238 bits (552), Expect = 9.794e-67
Identity = 113/220 (51.36%), Postives = 147/220 (66.82%), Query Frame = 0
Query:   73 WSDRLTPYQDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVAL 292
            W   L PY+ AW+ Q   V+ +L    +S       D LLL++HPP YTLG G+T   + FD    +   A + + ERGGE T+HGPGQLV YP+L+LRHY+QDLHWYLR LEEV+IR +AP G+ GGR +GLTGVWV+GRKV A+G+KV RW+TMHG +LN+ P M  F  IVPCGIGDRPVG L + W       ++ V +V   + ++F EVF V +
Sbjct:   17 WEAGLVPYKTAWEWQRSHVN-RLIQRPNSP------DLLLLLEHPPVYTLGQGATLDFVKFDL---ERTDAEIHRVERGGEVTYHGPGQLVGYPILNLRHYRQDLHWYLRQLEEVLIRAIAPFGLAGGRIDGLTGVWVDGRKVGAIGIKVSRWVTMHGFSLNVCPEMRGFGVIVPCGIGDRPVGCLAD-W-----IPEITVAEVQGAIAQSFAEVFEVTI 220          
BLAST of EWM28973.1 vs. NCBI_GenBank
Match: gi|298714386|emb|CBJ27443.1| (lipoyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 223.402 bits (568), Expect = 9.962e-67
Identity = 121/219 (55.25%), Postives = 157/219 (71.69%), Query Frame = 0
Query:   78 TPYQDAWDTQHRLVDGKLASLA----DSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAP-AALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVA 291
            TPY D W+ Q +     LA LA    D S   A  D +LL QH   +TLGTGS+  N+ F+P++   AP   + +TERGGE T+HGPGQ+V YP+++LR Y++D+HWYLRALEE VIRTLA LG++G R EGLTGVWVEGRKVAAVGV+VKRWITMHG++LN+ P +E+FR IVP GI +R V SL E    +G+   L +  V  L++++FEEVFGV+
Sbjct:  184 TPYNDGWEWQKQ----NLARLAERPDDLSSPDAELDRVLLTQHNAVFTLGTGSSLDNLRFEPDE---APFGEVVRTERGGEVTYHGPGQIVMYPIVNLRRYRKDIHWYLRALEETVIRTLAKLGLKGERIEGLTGVWVEGRKVAAVGVRVKRWITMHGLSLNVRPKLEHFRDIVPWGIEERTVSSL-EFLCAEGE--DLSMDRVGRLLLESFEEVFGVS 392          
BLAST of EWM28973.1 vs. NCBI_GenBank
Match: gi|553731757|ref|WP_023066429.1| (lipoyl(octanoyl) transferase [Lyngbya aestuarii] >gi|550816011|gb|ERT07416.1| lipoyl(octanoyl) transferase [Lyngbya aestuarii BL J])

HSP 1 Score: 217.238 bits (552), Expect = 1.002e-66
Identity = 117/220 (53.18%), Postives = 145/220 (65.91%), Query Frame = 0
Query:   77 LTPYQDAWDTQHRLVDGKLASLADSSHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVALDSVQ 296
            L PYQ AW  Q  LV           H ++  D LLL++HPP YTLG G+ P  I F+PN  QNA   L++ ERGGE T+H PGQLV YP+L+LR ++QDLHWYLR LEEV+IR LA  GV+G R  GLTGVW+  +KVAA+G+KV RWITMHG A+N+ P +E F HIVPCGI DR VG L E          + +++V   + KAF EVFGV L  V+
Sbjct:   19 LVPYQIAWQWQKSLVQ------RHKQHPESD-DVLLLLEHPPVYTLGQGADPKFIKFNPNS-QNA--ELYRVERGGEVTYHCPGQLVGYPILNLRRHQQDLHWYLRQLEEVIIRVLAVYGVKGDRIAGLTGVWIADKKVAAIGIKVSRWITMHGFAINVCPDLEGFEHIVPCGISDRAVGRLIEF------IPTVALEEVRSQVQKAFAEVFGVELIIVE 222          
The following BLAST results are available for this feature:
BLAST of EWM28973.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111462|gb|EWM28973.1|0.000e+0100.00lipoate-protein ligase b [Nannochloropsis gaditana... [more]
gi|553194454|ref|XP_005855958.1|3.948e-15599.08lipoyl(octanoyl) transferase [Nannochloropsis gadi... [more]
gi|873239171|emb|CEL94587.1|5.558e-8458.04unnamed protein product [Vitrella brassicaformis C... [more]
gi|499175658|ref|WP_010873245.1|8.152e-6853.95octanoyltransferase [Synechocystis sp. PCC 6803] >... [more]
gi|1180691310|ref|WP_084176480.1|9.003e-6856.28lipoyl(octanoyl) transferase [Limnothrix rosea][more]
gi|1115255654|gb|OKH20049.1|1.016e-6756.28lipoyl(octanoyl) transferase [Limnothrix rosea IAM... [more]
gi|1180117300|ref|WP_083636685.1|1.100e-6752.49lipoyl(octanoyl) transferase [Oscillatoriales cyan... [more]
gi|1057119267|ref|WP_068515019.1|9.794e-6751.36octanoyltransferase [Leptolyngbya sp. O-77][more]
gi|298714386|emb|CBJ27443.1|9.962e-6755.25lipoyltransferase [Ectocarpus siliculosus][more]
gi|553731757|ref|WP_023066429.1|1.002e-6653.18lipoyl(octanoyl) transferase [Lyngbya aestuarii] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1703rna1703Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications