EWM28982.1, cds1692 (CDS) Nannochloropsis gaditana

Overview
NameEWM28982.1
Unique Namecds1692
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1276599..1276661 -
Alignment locationCM002457.1:1276281..1276332 -
Alignment locationCM002457.1:1276087..1276181 -
Alignment locationCM002457.1:1275856..1275921 -
Alignment locationCM002457.1:1275487..1275543 -
Alignment locationCM002457.1:1275174..1275230 -
Alignment locationCM002457.1:1274812..1274887 -
Alignment locationCM002457.1:1274494..1274594 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28982.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100737g2.3614.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1276599..1276661 -
CM002457.1supercontigCM002457.1:1276281..1276332 -
CM002457.1supercontigCM002457.1:1276087..1276181 -
CM002457.1supercontigCM002457.1:1275856..1275921 -
CM002457.1supercontigCM002457.1:1275487..1275543 -
CM002457.1supercontigCM002457.1:1275174..1275230 -
CM002457.1supercontigCM002457.1:1274812..1274887 -
CM002457.1supercontigCM002457.1:1274494..1274594 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28982.1 vs. NCBI_GenBank
Match: gi|585111476|gb|EWM28982.1| (hypothetical protein Naga_100737g2 [Nannochloropsis gaditana])

HSP 1 Score: 384.03 bits (985), Expect = 5.486e-135
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query:    1 MDQLGDLDHEKLITAGLVTQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYDDIHGAGGASSSSAAGLPGYEGGTQQPSYNQSSTADL 188
            MDQLGDLDHEKLITAGLVTQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYDDIHGAGGASSSSAAGLPGYEGGTQQPSYNQSSTADL
Sbjct:    1 MDQLGDLDHEKLITAGLVTQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYDDIHGAGGASSSSAAGLPGYEGGTQQPSYNQSSTADL 188          
BLAST of EWM28982.1 vs. NCBI_GenBank
Match: gi|299471088|emb|CBN78947.1| (hypothetical protein Esi_0157_0040 [Ectocarpus siliculosus])

HSP 1 Score: 108.997 bits (271), Expect = 3.507e-26
Identity = 64/183 (34.97%), Postives = 96/183 (52.46%), Query Frame = 0
Query:    7 LDHEKLITAGLVTQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKM------------PLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYD--DIHGAGGASSSSAAGLPGYEGGT 175
            LD  K +   ++   V  +C+ IC+ VV+S AN G N VLTA++Y+ YV     V  R +             P+  G ++G++ M+ FLSLMTA++WGQ++ C     D+  YSC N    +A   FA+ L + + V  +AL+LW+++       YD  D     GA SSSA     Y+G T
Sbjct:   13 LDKRKSLNTVVLAMAVLTICFFICACVVSSNANAGLNVVLTAMMYVAYVGLLAVVFNRKRATDGGMDTAMAIEPIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISEAVTLAALILWKEDMFFVDGGYDNFDAQEDRGAYSSSAY---AYDGAT 192          
BLAST of EWM28982.1 vs. NCBI_GenBank
Match: gi|298708045|emb|CBJ30398.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.227 bits (269), Expect = 5.757e-26
Identity = 61/165 (36.97%), Postives = 92/165 (55.76%), Query Frame = 0
Query:   22 VFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYY-DIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSA--------YDDIHGAGGASSSSAAGLPGYEGGTQQ 177
            VF   + IC+ VVAS  N GF+ VLT LL   +  G   +L+R     ++GF++GV++++  ++LMTAI+WGQLA C   Y  D  +YSC+N+SA     AFA++++++QL F   LV  R    ++  A        YDD   A G   S   G P  + G+ +
Sbjct:   39 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKRGPHDTSLGFLIGVTLVLNVITLMTAIYWGQLAGCDSDYDGDYDQYSCSNKSAMRGVAAFASIIWVLQLPFIYLLVQRRGVLTREDYATSGGRYADYDDPAFAPGERDSGGWGKPPVDDGSPR 203          
The following BLAST results are available for this feature:
BLAST of EWM28982.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111476|gb|EWM28982.1|5.486e-135100.00hypothetical protein Naga_100737g2 [Nannochloropsi... [more]
gi|299471088|emb|CBN78947.1|3.507e-2634.97hypothetical protein Esi_0157_0040 [Ectocarpus sil... [more]
gi|298708045|emb|CBJ30398.1|5.757e-2636.97expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1696rna1696Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications