EWM28982.1, cds1692 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28982.1 vs. NCBI_GenBank
Match: gi|585111476|gb|EWM28982.1| (hypothetical protein Naga_100737g2 [Nannochloropsis gaditana]) HSP 1 Score: 384.03 bits (985), Expect = 5.486e-135 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query: 1 MDQLGDLDHEKLITAGLVTQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYDDIHGAGGASSSSAAGLPGYEGGTQQPSYNQSSTADL 188
MDQLGDLDHEKLITAGLVTQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYDDIHGAGGASSSSAAGLPGYEGGTQQPSYNQSSTADL
Sbjct: 1 MDQLGDLDHEKLITAGLVTQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYDDIHGAGGASSSSAAGLPGYEGGTQQPSYNQSSTADL 188
BLAST of EWM28982.1 vs. NCBI_GenBank
Match: gi|299471088|emb|CBN78947.1| (hypothetical protein Esi_0157_0040 [Ectocarpus siliculosus]) HSP 1 Score: 108.997 bits (271), Expect = 3.507e-26 Identity = 64/183 (34.97%), Postives = 96/183 (52.46%), Query Frame = 0
Query: 7 LDHEKLITAGLVTQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKM------------PLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYD--DIHGAGGASSSSAAGLPGYEGGT 175
LD K + ++ V +C+ IC+ VV+S AN G N VLTA++Y+ YV V R + P+ G ++G++ M+ FLSLMTA++WGQ++ C D+ YSC N +A FA+ L + + V +AL+LW+++ YD D GA SSSA Y+G T
Sbjct: 13 LDKRKSLNTVVLAMAVLTICFFICACVVSSNANAGLNVVLTAMMYVAYVGLLAVVFNRKRATDGGMDTAMAIEPIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISEAVTLAALILWKEDMFFVDGGYDNFDAQEDRGAYSSSAY---AYDGAT 192
BLAST of EWM28982.1 vs. NCBI_GenBank
Match: gi|298708045|emb|CBJ30398.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 108.227 bits (269), Expect = 5.757e-26 Identity = 61/165 (36.97%), Postives = 92/165 (55.76%), Query Frame = 0
Query: 22 VFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYY-DIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSA--------YDDIHGAGGASSSSAAGLPGYEGGTQQ 177
VF + IC+ VVAS N GF+ VLT LL + G +L+R ++GF++GV++++ ++LMTAI+WGQLA C Y D +YSC+N+SA AFA++++++QL F LV R ++ A YDD A G S G P + G+ +
Sbjct: 39 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKRGPHDTSLGFLIGVTLVLNVITLMTAIYWGQLAGCDSDYDGDYDQYSCSNKSAMRGVAAFASIIWVLQLPFIYLLVQRRGVLTREDYATSGGRYADYDDPAFAPGERDSGGWGKPPVDDGSPR 203 The following BLAST results are available for this feature:
BLAST of EWM28982.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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