EWM28995.1, cds1672 (CDS) Nannochloropsis gaditana

Overview
NameEWM28995.1
Unique Namecds1672
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1239684..1239961 -
Alignment locationCM002457.1:1239240..1239374 -
Alignment locationCM002457.1:1238845..1239079 -
Alignment locationCM002457.1:1238575..1238675 -
Alignment locationCM002457.1:1238267..1238374 -

Link to JBrowse

Properties
Property NameValue
Start range1238267
Start range.
Protein idEWM28995.1
Productserine threonine protein kinase
Partialtrue
Orig transcript idgnl|cribi|Naga_100373g11.5921.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1239684..1239961 -
CM002457.1supercontigCM002457.1:1239240..1239374 -
CM002457.1supercontigCM002457.1:1238845..1239079 -
CM002457.1supercontigCM002457.1:1238575..1238675 -
CM002457.1supercontigCM002457.1:1238267..1238374 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0004672protein kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0007165signal transduction
GO:0006468protein phosphorylation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
IPR000719Prot_kinase_dom
Homology
BLAST of EWM28995.1 vs. NCBI_GenBank
Match: gi|585111494|gb|EWM28995.1| (serine threonine protein kinase, partial [Nannochloropsis gaditana])

HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
Query:    1 MEPPQGAEPAMSLDESNGSHQATASNLPRRGGLTQNSHNHSLASFASHEGLPTGEAGGGAGKRGMIGGHAASTAVAVVPVGKDGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLSTVSQRAESCVGTAPFMAPELFEEDYDEKVGVTPLSPPSL 286
            MEPPQGAEPAMSLDESNGSHQATASNLPRRGGLTQNSHNHSLASFASHEGLPTGEAGGGAGKRGMIGGHAASTAVAVVPVGKDGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLSTVSQRAESCVGTAPFMAPELFEEDYDEKVGVTPLSPPSL
Sbjct:    1 MEPPQGAEPAMSLDESNGSHQATASNLPRRGGLTQNSHNHSLASFASHEGLPTGEAGGGAGKRGMIGGHAASTAVAVVPVGKDGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLSTVSQRAESCVGTAPFMAPELFEEDYDEKVGVTPLSPPSL 286          
BLAST of EWM28995.1 vs. NCBI_GenBank
Match: gi|224006365|ref|XP_002292143.1| (mitogen activated protein kinase-like protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220972662|gb|EED90994.1| mitogen activated protein kinase-like protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 228.024 bits (580), Expect = 1.861e-70
Identity = 104/197 (52.79%), Postives = 157/197 (79.70%), Query Frame = 0
Query:   85 VVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLST-VSQRAE-SCV-GTAPFMAPELFEEDYDEKVGV 278
            +VE SP  RY+RF  +L + AYK++++A+DT EG+EVAWN + L  VP++++ RI+NE+R+LE++ H NII+F+ SW NR T++++F+TE++   ++G+L +FVQ + ++RW+I KRW  QIL+GL +LHSQDPPIIHR++ C+NIFI   +G+L+IGD GLST +S++ + SCV GT  FMAPEL++E+Y+EKV V
Sbjct:    6 IVEKSPAERYIRFKEKLGSGAYKDVYRAYDTIEGIEVAWNVVKLGGVPKAERIRIVNEVRLLERLHHPNIISFHGSWVNRETERVIFVTEIL---SSGTLKSFVQKVQLIRWKIFKRWAIQILKGLEYLHSQDPPIIHRDLKCDNIFINGTSGDLRIGDFGLSTAISKKNQVSCVLGTPEFMAPELYDENYNEKVDV 199          
BLAST of EWM28995.1 vs. NCBI_GenBank
Match: gi|970658354|gb|KUF96127.1| (hypothetical protein AM588_10005978 [Phytophthora nicotianae])

HSP 1 Score: 237.269 bits (604), Expect = 5.112e-70
Identity = 103/201 (51.24%), Postives = 155/201 (77.11%), Query Frame = 0
Query:   83 DGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLST---VSQR--AESCVGTAPFMAPELFEEDYDEKVGV 278
            D  +EHSP+GRY+RF+ RL   AYK ++KA+DT +G++VAWN + +  +P ++K RI+ E+++L+K++H NII FY SW+++   Q+VFITE+M    +G+L ++++ +  ++W+I+KRW  QILEGL +LHSQ+PP+IHR++ C+NIF+  NTG+L+IGDLGLST   V +R  A+S +GT  FMAPEL++E YDEKV V
Sbjct:   13 DRPMEHSPRGRYIRFDIRLGTGAYKSVYKAYDTDQGIDVAWNAIDIGLLPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSKEKNQVVFITEIM---TSGTLKSYIKRVQFIKWKIIKRWCIQILEGLHYLHSQNPPVIHRDLKCDNIFVNGNTGDLRIGDLGLSTQLAVDKRSKAQSVLGTPEFMAPELYDESYDEKVDV 210          
BLAST of EWM28995.1 vs. NCBI_GenBank
Match: gi|953488020|emb|CEG48037.1| (wnk protein kinase [Plasmopara halstedii])

HSP 1 Score: 240.736 bits (613), Expect = 7.684e-69
Identity = 104/201 (51.74%), Postives = 155/201 (77.11%), Query Frame = 0
Query:   83 DGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLST---VSQR--AESCVGTAPFMAPELFEEDYDEKVGV 278
            D  VEHSP+GRY+RF+ RL   AYK ++KA+DT +G++VAWN + +  +P ++K RI+ E+++L+K++H NII FY SW+++   Q+VFITE+M    +G+L ++++ +  ++W+I+KRW  QILEGL +LHSQ+PP+IHR++ C+NIF+  NTG+L+IGDLGLST   V +R  A+S +GT  FMAPEL++E YDEKV V
Sbjct:   13 DRPVEHSPRGRYIRFDIRLGTGAYKSVYKAYDTDQGIDVAWNAIDIGLLPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSKEKNQVVFITEIM---TSGTLKSYIKRVQFIKWKIIKRWCIQILEGLHYLHSQNPPVIHRDLKCDNIFVNGNTGDLRIGDLGLSTQLAVDKRSKAQSVLGTPEFMAPELYDESYDEKVDV 210          
BLAST of EWM28995.1 vs. NCBI_GenBank
Match: gi|301101122|ref|XP_002899650.1| (serine/threonine protein kinase [Phytophthora infestans T30-4] >gi|262103958|gb|EEY62010.1| serine/threonine protein kinase [Phytophthora infestans T30-4])

HSP 1 Score: 238.81 bits (608), Expect = 1.060e-68
Identity = 103/201 (51.24%), Postives = 155/201 (77.11%), Query Frame = 0
Query:   83 DGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLST---VSQR--AESCVGTAPFMAPELFEEDYDEKVGV 278
            D  +EHSP+GRY+RF+ RL   AYK ++KA+DT +G++VAWN + +  +P ++K RI+ E+++L+K++H NII FY SW+++   Q+VFITE+M    +G+L ++++ +  ++W+I+KRW  QILEGL +LHSQ+PP+IHR++ C+NIF+  NTG+L+IGDLGLST   V +R  A+S +GT  FMAPEL++E YDEKV V
Sbjct:   13 DRPMEHSPRGRYIRFDIRLGTGAYKSVYKAYDTDQGIDVAWNAIDIGLLPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSKEKNQVVFITEIM---TSGTLKSYIKRVQFIKWKIIKRWCIQILEGLHYLHSQNPPVIHRDLKCDNIFVNGNTGDLRIGDLGLSTQLAVDKRSKAQSVLGTPEFMAPELYDESYDEKVDV 210          
BLAST of EWM28995.1 vs. NCBI_GenBank
Match: gi|695415641|ref|XP_009526621.1| (hypothetical protein PHYSODRAFT_502916 [Phytophthora sojae] >gi|348677746|gb|EGZ17563.1| hypothetical protein PHYSODRAFT_502916 [Phytophthora sojae])

HSP 1 Score: 239.195 bits (609), Expect = 1.151e-68
Identity = 103/201 (51.24%), Postives = 155/201 (77.11%), Query Frame = 0
Query:   83 DGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLST---VSQR--AESCVGTAPFMAPELFEEDYDEKVGV 278
            D  VEHSP+GRY+RF+ RL   AYK ++KA+DT +G++VAWN + +  +P ++K RI+ E+++L+K++H NII FY SW+++   Q+VFITE+M    +G+L ++++ +  ++W+I+KRW  QILEGL +LHSQ+PP+IHR++ C+NIF+  NTG+L+IGDLGLST   V +R  A+S +GT  FMAPEL++E YDEKV +
Sbjct:   13 DRPVEHSPRGRYIRFDIRLGMGAYKSVYKAYDTDQGIDVAWNAIDIGLLPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSKEKNQVVFITEIM---TSGTLKSYIKRVQFIKWKIIKRWCIQILEGLHYLHSQNPPVIHRDLKCDNIFVNGNTGDLRIGDLGLSTQLAVDKRSKAQSVLGTPEFMAPELYDESYDEKVDI 210          
BLAST of EWM28995.1 vs. NCBI_GenBank
Match: gi|568048493|gb|ETM45541.1| (WNK protein kinase [Phytophthora parasitica])

HSP 1 Score: 239.58 bits (610), Expect = 1.957e-68
Identity = 103/201 (51.24%), Postives = 155/201 (77.11%), Query Frame = 0
Query:   83 DGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLST---VSQR--AESCVGTAPFMAPELFEEDYDEKVGV 278
            D  +EHSP+GRY+RF+ RL   AYK ++KA+DT +G++VAWN + +  +P ++K RI+ E+++L+K++H NII FY SW+++   Q+VFITE+M    +G+L ++++ +  ++W+I+KRW  QILEGL +LHSQ+PP+IHR++ C+NIF+  NTG+L+IGDLGLST   V +R  A+S +GT  FMAPEL++E YDEKV V
Sbjct:   13 DRPMEHSPRGRYIRFDIRLGTGAYKSVYKAYDTDQGIDVAWNAIDIGLLPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSKEKNQVVFITEIM---TSGTLKSYIKRVQFIKWKIIKRWCIQILEGLHYLHSQNPPVIHRDLKCDNIFVNGNTGDLRIGDLGLSTQLAVDKRSKAQSVLGTPEFMAPELYDESYDEKVDV 210          
BLAST of EWM28995.1 vs. NCBI_GenBank
Match: gi|567960130|gb|ETK85694.1| (WNK protein kinase [Phytophthora parasitica] >gi|567988853|gb|ETL39123.1| WNK protein kinase [Phytophthora parasitica] >gi|570950311|gb|ETP15568.1| WNK protein kinase [Phytophthora parasitica CJ01A1] >gi|570983888|gb|ETP43631.1| WNK protein kinase [Phytophthora parasitica P10297])

HSP 1 Score: 239.195 bits (609), Expect = 2.078e-68
Identity = 103/201 (51.24%), Postives = 155/201 (77.11%), Query Frame = 0
Query:   83 DGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLST---VSQR--AESCVGTAPFMAPELFEEDYDEKVGV 278
            D  +EHSP+GRY+RF+ RL   AYK ++KA+DT +G++VAWN + +  +P ++K RI+ E+++L+K++H NII FY SW+++   Q+VFITE+M    +G+L ++++ +  ++W+I+KRW  QILEGL +LHSQ+PP+IHR++ C+NIF+  NTG+L+IGDLGLST   V +R  A+S +GT  FMAPEL++E YDEKV V
Sbjct:   13 DRPMEHSPRGRYIRFDIRLGTGAYKSVYKAYDTDQGIDVAWNAIDIGLLPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSKEKNQVVFITEIM---TSGTLKSYIKRVQFIKWKIIKRWCIQILEGLHYLHSQNPPVIHRDLKCDNIFVNGNTGDLRIGDLGLSTQLAVDKRSKAQSVLGTPEFMAPELYDESYDEKVDV 210          
BLAST of EWM28995.1 vs. NCBI_GenBank
Match: gi|568018059|gb|ETL92236.1| (WNK protein kinase [Phytophthora parasitica])

HSP 1 Score: 239.195 bits (609), Expect = 2.131e-68
Identity = 103/201 (51.24%), Postives = 155/201 (77.11%), Query Frame = 0
Query:   83 DGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLST---VSQR--AESCVGTAPFMAPELFEEDYDEKVGV 278
            D  +EHSP+GRY+RF+ RL   AYK ++KA+DT +G++VAWN + +  +P ++K RI+ E+++L+K++H NII FY SW+++   Q+VFITE+M    +G+L ++++ +  ++W+I+KRW  QILEGL +LHSQ+PP+IHR++ C+NIF+  NTG+L+IGDLGLST   V +R  A+S +GT  FMAPEL++E YDEKV V
Sbjct:   13 DRPMEHSPRGRYIRFDIRLGTGAYKSVYKAYDTDQGIDVAWNAIDIGLLPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSKEKNQVVFITEIM---TSGTLKSYIKRVQFIKWKIIKRWCIQILEGLHYLHSQNPPVIHRDLKCDNIFVNGNTGDLRIGDLGLSTQLAVDKRSKAQSVLGTPEFMAPELYDESYDEKVDV 210          
BLAST of EWM28995.1 vs. NCBI_GenBank
Match: gi|566022834|gb|ETI45745.1| (WNK protein kinase [Phytophthora parasitica P1569])

HSP 1 Score: 239.195 bits (609), Expect = 2.295e-68
Identity = 103/201 (51.24%), Postives = 155/201 (77.11%), Query Frame = 0
Query:   83 DGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLST---VSQR--AESCVGTAPFMAPELFEEDYDEKVGV 278
            D  +EHSP+GRY+RF+ RL   AYK ++KA+DT +G++VAWN + +  +P ++K RI+ E+++L+K++H NII FY SW+++   Q+VFITE+M    +G+L ++++ +  ++W+I+KRW  QILEGL +LHSQ+PP+IHR++ C+NIF+  NTG+L+IGDLGLST   V +R  A+S +GT  FMAPEL++E YDEKV V
Sbjct:   13 DRPMEHSPRGRYIRFDIRLGTGAYKSVYKAYDTDQGIDVAWNAIDIGLLPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSKEKNQVVFITEIM---TSGTLKSYIKRVQFIKWKIIKRWCIQILEGLHYLHSQNPPVIHRDLKCDNIFVNGNTGDLRIGDLGLSTQLAVDKRSKAQSVLGTPEFMAPELYDESYDEKVDV 210          
The following BLAST results are available for this feature:
BLAST of EWM28995.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111494|gb|EWM28995.1|0.000e+0100.00serine threonine protein kinase, partial [Nannochl... [more]
gi|224006365|ref|XP_002292143.1|1.861e-7052.79mitogen activated protein kinase-like protein, par... [more]
gi|970658354|gb|KUF96127.1|5.112e-7051.24hypothetical protein AM588_10005978 [Phytophthora ... [more]
gi|953488020|emb|CEG48037.1|7.684e-6951.74wnk protein kinase [Plasmopara halstedii][more]
gi|301101122|ref|XP_002899650.1|1.060e-6851.24serine/threonine protein kinase [Phytophthora infe... [more]
gi|695415641|ref|XP_009526621.1|1.151e-6851.24hypothetical protein PHYSODRAFT_502916 [Phytophtho... [more]
gi|568048493|gb|ETM45541.1|1.957e-6851.24WNK protein kinase [Phytophthora parasitica][more]
gi|567960130|gb|ETK85694.1|2.078e-6851.24WNK protein kinase [Phytophthora parasitica] >gi|5... [more]
gi|568018059|gb|ETL92236.1|2.131e-6851.24WNK protein kinase [Phytophthora parasitica][more]
gi|566022834|gb|ETI45745.1|2.295e-6851.24WNK protein kinase [Phytophthora parasitica P1569][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1676rna1676Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications