EWM29011.1, cds1662 (CDS) Nannochloropsis gaditana

Overview
NameEWM29011.1
Unique Namecds1662
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1210837..1210964 -
Alignment locationCM002457.1:1210511..1210626 -
Alignment locationCM002457.1:1210382..1210404 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29011.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_102472g1.9942.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1210837..1210964 -
CM002457.1supercontigCM002457.1:1210511..1210626 -
CM002457.1supercontigCM002457.1:1210382..1210404 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005635nuclear envelope
GO:0005643nuclear pore
Vocabulary: INTERPRO
TermDefinition
IPR007252Nup84_Nup100
Homology
BLAST of EWM29011.1 vs. NCBI_GenBank
Match: gi|585111519|gb|EWM29011.1| (uncharacterized protein Naga_102472g1 [Nannochloropsis gaditana])

HSP 1 Score: 181.415 bits (459), Expect = 5.025e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query:    1 MWPSTCQREGRACLDPDYPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDPWEVFVPEEEKRTKA 88
            MWPSTCQREGRACLDPDYPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDPWEVFVPEEEKRTKA
Sbjct:    1 MWPSTCQREGRACLDPDYPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDPWEVFVPEEEKRTKA 88          
BLAST of EWM29011.1 vs. NCBI_GenBank
Match: gi|196009778|ref|XP_002114754.1| (hypothetical protein TRIADDRAFT_28194 [Trichoplax adhaerens] >gi|190582816|gb|EDV22888.1| hypothetical protein TRIADDRAFT_28194, partial [Trichoplax adhaerens])

HSP 1 Score: 67.781 bits (164), Expect = 2.313e-11
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 0
Query:   14 LDPDYPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDPW 75
            +DPD P  S  PLM +DE  D  LL+ I+R +RAG++  A ++C+RCGQ WRAA++ G   W
Sbjct:   73 MDPDAPIRSGLPLMDLDEEDDARLLKHIFRLVRAGQVTKAQEVCIRCGQAWRAATLEGWKMW 134          
BLAST of EWM29011.1 vs. NCBI_GenBank
Match: gi|922869377|gb|KOO35516.1| (nuclear pore complex protein nup107 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 67.0106 bits (162), Expect = 4.157e-11
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 0
Query:   12 ACLDPDYPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDPWEVFVPEE 82
            + LDPD P   ++ L P DE     LL  +W+ +RAG+LDDA  LC R GQ+WRAA+++GG+P+  + P E
Sbjct:  276 SSLDPDAPFKEKKQLDPEDEAAQAELLRLLWQRVRAGKLDDAQALCRRSGQHWRAATLAGGEPYH-YNPSE 345          
BLAST of EWM29011.1 vs. NCBI_GenBank
Match: gi|926771858|ref|XP_013894403.1| (Nuclear pore complex protein [Monoraphidium neglectum] >gi|761962403|gb|KIY95383.1| Nuclear pore complex protein [Monoraphidium neglectum])

HSP 1 Score: 67.0106 bits (162), Expect = 5.193e-11
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0
Query:   14 LDPDYPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDPW 75
            LDPD P      L   D+R +  L  ++W+ +RAG+L  A DLC RCGQ WRAA++SGG PW
Sbjct:  201 LDPDAPSRGATALRGEDQRNEERLAAQLWQLMRAGKLQQAQDLCRRCGQDWRAAALSGGGPW 262          
BLAST of EWM29011.1 vs. NCBI_GenBank
Match: gi|568022164|gb|ETL96242.1| (hypothetical protein L917_06153 [Phytophthora parasitica])

HSP 1 Score: 65.855 bits (159), Expect = 1.191e-10
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   10 GRACLDPD-YPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDP 74
            G   +DPD   +     ++P D   +  L++ +W ++RAGR+DDAIDLC+R GQ WRAAS+SGG+P
Sbjct:  473 GDVQMDPDAVVRDGDAHILPDDLEDEAELMKALWLYVRAGRMDDAIDLCIRLGQSWRAASLSGGNP 538          
BLAST of EWM29011.1 vs. NCBI_GenBank
Match: gi|970648711|gb|KUF88182.1| (Nuclear pore complex protein [Phytophthora nicotianae])

HSP 1 Score: 65.855 bits (159), Expect = 1.213e-10
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   10 GRACLDPD-YPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDP 74
            G   +DPD   +     ++P D   +  L++ +W ++RAGR+DDAIDLC+R GQ WRAAS+SGG+P
Sbjct:  443 GDVQMDPDAVVRDGDAHILPDDLEDEAELMKALWLYVRAGRMDDAIDLCIRLGQSWRAASLSGGNP 508          
BLAST of EWM29011.1 vs. NCBI_GenBank
Match: gi|675166133|ref|XP_008891951.1| (hypothetical protein PPTG_02577 [Phytophthora parasitica INRA-310] >gi|568108097|gb|ETN22721.1| hypothetical protein PPTG_02577 [Phytophthora parasitica INRA-310])

HSP 1 Score: 65.855 bits (159), Expect = 1.214e-10
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   10 GRACLDPD-YPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDP 74
            G   +DPD   +     ++P D   +  L++ +W ++RAGR+DDAIDLC+R GQ WRAAS+SGG+P
Sbjct:  473 GDVQMDPDAVVRDGDAHILPDDLEDEAELMKALWLYVRAGRMDDAIDLCIRLGQSWRAASLSGGNP 538          
BLAST of EWM29011.1 vs. NCBI_GenBank
Match: gi|570330598|gb|ETO78546.1| (hypothetical protein F444_06530 [Phytophthora parasitica P1976])

HSP 1 Score: 65.855 bits (159), Expect = 1.226e-10
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   10 GRACLDPD-YPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDP 74
            G   +DPD   +     ++P D   +  L++ +W ++RAGR+DDAIDLC+R GQ WRAAS+SGG+P
Sbjct:  473 GDVQMDPDAVVRDGDAHILPDDLEDEAELMKALWLYVRAGRMDDAIDLCIRLGQSWRAASLSGGNP 538          
BLAST of EWM29011.1 vs. NCBI_GenBank
Match: gi|567964172|gb|ETK89663.1| (hypothetical protein L915_06346 [Phytophthora parasitica] >gi|567992886|gb|ETL43073.1| hypothetical protein L916_06283 [Phytophthora parasitica] >gi|568052534|gb|ETM49408.1| hypothetical protein L914_06276 [Phytophthora parasitica] >gi|570954286|gb|ETP19543.1| hypothetical protein F441_06474 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.855 bits (159), Expect = 1.226e-10
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   10 GRACLDPD-YPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDP 74
            G   +DPD   +     ++P D   +  L++ +W ++RAGR+DDAIDLC+R GQ WRAAS+SGG+P
Sbjct:  473 GDVQMDPDAVVRDGDAHILPDDLEDEAELMKALWLYVRAGRMDDAIDLCIRLGQSWRAASLSGGNP 538          
BLAST of EWM29011.1 vs. NCBI_GenBank
Match: gi|566026709|gb|ETI49620.1| (hypothetical protein F443_06470 [Phytophthora parasitica P1569])

HSP 1 Score: 65.855 bits (159), Expect = 1.226e-10
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   10 GRACLDPD-YPQHSRRPLMPVDERQDFLLLERIWRFLRAGRLDDAIDLCLRCGQYWRAASISGGDP 74
            G   +DPD   +     ++P D   +  L++ +W ++RAGR+DDAIDLC+R GQ WRAAS+SGG+P
Sbjct:  473 GDVQMDPDAVVRDGDAHILPDDLEDEAELMKALWLYVRAGRMDDAIDLCIRLGQSWRAASLSGGNP 538          
The following BLAST results are available for this feature:
BLAST of EWM29011.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111519|gb|EWM29011.1|5.025e-58100.00uncharacterized protein Naga_102472g1 [Nannochloro... [more]
gi|196009778|ref|XP_002114754.1|2.313e-1148.39hypothetical protein TRIADDRAFT_28194 [Trichoplax ... [more]
gi|922869377|gb|KOO35516.1|4.157e-1146.48nuclear pore complex protein nup107 [Chrysochromul... [more]
gi|926771858|ref|XP_013894403.1|5.193e-1150.00Nuclear pore complex protein [Monoraphidium neglec... [more]
gi|568022164|gb|ETL96242.1|1.191e-1046.97hypothetical protein L917_06153 [Phytophthora para... [more]
gi|970648711|gb|KUF88182.1|1.213e-1046.97Nuclear pore complex protein [Phytophthora nicotia... [more]
gi|675166133|ref|XP_008891951.1|1.214e-1046.97hypothetical protein PPTG_02577 [Phytophthora para... [more]
gi|570330598|gb|ETO78546.1|1.226e-1046.97hypothetical protein F444_06530 [Phytophthora para... [more]
gi|567964172|gb|ETK89663.1|1.226e-1046.97hypothetical protein L915_06346 [Phytophthora para... [more]
gi|566026709|gb|ETI49620.1|1.226e-1046.97hypothetical protein F443_06470 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1666rna1666Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications