EWM29018.1, cds1657 (CDS) Nannochloropsis gaditana

Overview
NameEWM29018.1
Unique Namecds1657
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1190603..1191427 -

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Properties
Property NameValue
Protein idEWM29018.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101050g1.8459.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1190603..1191427 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29018.1 vs. NCBI_GenBank
Match: gi|585111531|gb|EWM29018.1| (hypothetical protein Naga_101050g1 [Nannochloropsis gaditana])

HSP 1 Score: 542.732 bits (1397), Expect = 0.000e+0
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
Query:    1 MLNGALQADRPSLRTAWEEEVRAAKTLAGFALCLYAFLRRARALLPEIKRRVKGIRQQEIAAKHSILANVEAGAVNLPTRETATVVWARLPRGPYWPALAHLPHHAGLRKLLKGMGHRMIRFIGEVGVYHLRTEMPLLPGLPPPATGGNAPSVLPFVDGEGRSSVDVLKKGRSLAKSLKVAWQLHEKFTQEGRKEEEEEEVGPGGVEEWLMDLEDEEVSSDEATESEEEKGRGWGGGNGRGKRRLRSTGKGESGASGSEQGGRREGRRSRRRRS 274
            MLNGALQADRPSLRTAWEEEVRAAKTLAGFALCLYAFLRRARALLPEIKRRVKGIRQQEIAAKHSILANVEAGAVNLPTRETATVVWARLPRGPYWPALAHLPHHAGLRKLLKGMGHRMIRFIGEVGVYHLRTEMPLLPGLPPPATGGNAPSVLPFVDGEGRSSVDVLKKGRSLAKSLKVAWQLHEKFTQEGRKEEEEEEVGPGGVEEWLMDLEDEEVSSDEATESEEEKGRGWGGGNGRGKRRLRSTGKGESGASGSEQGGRREGRRSRRRRS
Sbjct:    1 MLNGALQADRPSLRTAWEEEVRAAKTLAGFALCLYAFLRRARALLPEIKRRVKGIRQQEIAAKHSILANVEAGAVNLPTRETATVVWARLPRGPYWPALAHLPHHAGLRKLLKGMGHRMIRFIGEVGVYHLRTEMPLLPGLPPPATGGNAPSVLPFVDGEGRSSVDVLKKGRSLAKSLKVAWQLHEKFTQEGRKEEEEEEVGPGGVEEWLMDLEDEEVSSDEATESEEEKGRGWGGGNGRGKRRLRSTGKGESGASGSEQGGRREGRRSRRRRS 274          
BLAST of EWM29018.1 vs. NCBI_GenBank
Match: gi|299473363|emb|CBN77761.1| (nucleosome/chromatin assembly factor group [Ectocarpus siliculosus])

HSP 1 Score: 70.4774 bits (171), Expect = 5.770e-10
Identity = 48/133 (36.09%), Postives = 67/133 (50.38%), Query Frame = 0
Query:    2 LNGALQADRPSLRTAWEEEVRAAKTLAGFALCLYAFLRRARALLPEIKRRVKGIRQQEIAAKHSILANVEAGAVNLPTRETATVVWARLPRGPYWPALAHLPHHAGLRKLLKGM--GHRMIRFIGEVGVYHLR 132
            L GAL  D P+ R AW +E+ AA+TLAG A  +Y+ L  A  +LP ++ +      QE A  +  LA  +A  V   +  T+ +VWARL   P+WPAL   P   G +   KG+   H      G+    H R
Sbjct: 1448 LQGALSTD-PAFREAWRKEMLAARTLAGVATLVYSLLTSAAGVLPALQEQ----DMQEQALINQDLATNQALRVRCSS--TSEIVWARLHGFPWWPALVVKPEGVGFQMATKGLRVAHERFGSDGDPNAPHNR 1573          
The following BLAST results are available for this feature:
BLAST of EWM29018.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111531|gb|EWM29018.1|0.000e+0100.00hypothetical protein Naga_101050g1 [Nannochloropsi... [more]
gi|299473363|emb|CBN77761.1|5.770e-1036.09nucleosome/chromatin assembly factor group [Ectoca... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1661rna1661Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications