EWM29020.1, cds1653 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29020.1 vs. NCBI_GenBank
Match: gi|585111535|gb|EWM29020.1| (Tyrosine-protein phosphatase family, C-terminal domain protein [Nannochloropsis gaditana]) HSP 1 Score: 846.655 bits (2186), Expect = 0.000e+0 Identity = 424/424 (100.00%), Postives = 424/424 (100.00%), Query Frame = 0
Query: 1 MKASVRVAVLLFPFLIAAVVDGFIPLPPTCAWASSSASSSPSSNLPAFEDRARIPCSPSGARHRALNIASSAASLGGMSDSSSSSSSSSTSSSSPSSSPPSPSSTPPSDAAAAAAAAAAVGMVTGGIKLERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKELGMDDQMNSSATKRGCGGKNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKALREG 424
MKASVRVAVLLFPFLIAAVVDGFIPLPPTCAWASSSASSSPSSNLPAFEDRARIPCSPSGARHRALNIASSAASLGGMSDSSSSSSSSSTSSSSPSSSPPSPSSTPPSDAAAAAAAAAAVGMVTGGIKLERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKELGMDDQMNSSATKRGCGGKNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKALREG
Sbjct: 1 MKASVRVAVLLFPFLIAAVVDGFIPLPPTCAWASSSASSSPSSNLPAFEDRARIPCSPSGARHRALNIASSAASLGGMSDSSSSSSSSSTSSSSPSSSPPSPSSTPPSDAAAAAAAAAAVGMVTGGIKLERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKELGMDDQMNSSATKRGCGGKNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKALREG 424
BLAST of EWM29020.1 vs. NCBI_GenBank
Match: gi|298709451|emb|CBJ31357.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 252.677 bits (644), Expect = 5.878e-75 Identity = 153/332 (46.08%), Postives = 198/332 (59.64%), Query Frame = 0
Query: 129 LERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKELGMDDQMNSSATKR--GCGGKNAETVRVDPSPA-------------------------------------PSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKAL 421
LE V+NIRDLSSV G GI AGR++RTG+LS A+E D K +R++ +TL+DLRS ELG D+ ++ + GG + V PA + G + +R+F+S+IDE IY++GVF+RL +R KAA L L VS+R ++AR IFL IN GL LLN+LLL YSG + RVL LL+ KE +P+ALYCTAGKDRTGLV+ L LA LGV AI +DY SD+AY L+D AMVGAL Q +LDP+ FL AP V+E L +I K+GSI+ YLD IGF + R L+ AL
Sbjct: 208 LEGVQNIRDLSSVEGYGIVAGRVFRTGHLSAATERDAKTLRDSTGLRTLVDLRSATELGHDELIHGDVYEGFVNVGGGDHSGTGVSQGPAWDEAIQGESNDALPVQGKVGGASAGAGGAEEGVVVEGHNGGGSEKKRRYFVSLIDESIYKKGVFQRLRRRHKAAVLALAPATMVSRRCTQKARGIFLREINAGGLVLLNELLLQYSGDGINRVLRLLASKEHHPVALYCTAGKDRTGLVVALTLAVLGVPDEAIVDDYAKSDSAYKQLADRDAMVGALAQ-QDLDPDTFLGAPPHVMEGVLRFIRVKYGSIDDYLDSIGFDAEWRTRLRSAL 538
BLAST of EWM29020.1 vs. NCBI_GenBank
Match: gi|551647369|ref|XP_005826469.1| (hypothetical protein GUITHDRAFT_114452 [Guillardia theta CCMP2712] >gi|428170565|gb|EKX39489.1| hypothetical protein GUITHDRAFT_114452 [Guillardia theta CCMP2712]) HSP 1 Score: 234.572 bits (597), Expect = 3.147e-71 Identity = 133/283 (47.00%), Postives = 177/283 (62.54%), Query Frame = 0
Query: 150 RIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKELGMDD-QMNSSA----------TKRGCGGKNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKAL 421
R++RT + ASE D I E KTLIDLRSEKE GMD + NSS K+ GK + P+ P RH +SVIDE IY+RGVFKR++ RKK I G + +ARS F+ YIN+AGLPLLN+L+L+Y GP+++ V+++LSD+ +P+A YCTAGKDRTGL+ +L+L+ LGVD+ AI DYV YA+L D AMVGAL Q LDPEKFLRAPR+V+E T+ +++++G YL+ IGF D+ L+ AL
Sbjct: 11 RVFRTACVGTASESDACLIVEN--IKTLIDLRSEKEYGMDSVKYNSSVWQQYDDLIYEVKKSKTGKPKALIPSSPAKEPMRA------RHMLSVIDEAIYKRGVFKRMSLRKK------IKAGIYRAVSYTKARSFFIEYINNAGLPLLNELILDYGGPSIKAVMQVLSDRANHPVAFYCTAGKDRTGLIAMLVLSVLGVDNEAIVNDYV-----YANLGDKNAMVGALRQ-EQLDPEKFLRAPRAVMEQTIKLLKEEYGGAAKYLESIGFGPDEVKKLRVAL 273
BLAST of EWM29020.1 vs. NCBI_GenBank
Match: gi|1072237375|gb|OEU22102.1| (hypothetical protein FRACYDRAFT_179260 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 204.912 bits (520), Expect = 5.727e-58 Identity = 127/343 (37.03%), Postives = 179/343 (52.19%), Query Frame = 0
Query: 129 LERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKELGMDD--------------QMNSSATKRGC---------------------GGKN------AETVRV---DPSPAPS----TGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKALRE 423
E++KN RDL + S I AGRI+RTG L A+E D K + E T++DLRS EL DD + + + GC GG + E V DP P+ T +RHF+S+++E Y RG ++ KR A A+ G +SKR + F+ IN GL +LNDLLL + P ++ VL+L ++ +R+P+A YCTAGKDRTG++ ++L+ G I EDY LS YA+++D KAMVGAL Q NLD + FL AP V+ TL +++ +G +EGY D IGF ++R L+KAL E
Sbjct: 82 FEKIKNCRDLGATASSPIVAGRIFRTGRLGDATEADQKILLEGLGITTMVDLRSPTELRDDDALMADIFRGFTDLVWIENGRRRDGCLKELKPGVSPVEKSRKSRFKKGGDDDVVSAEEEMCDVGCDDPQTVPAGRSLTKSGDRKERHFVSLMNEFKYVRGTVTKVRKRDIAKAIIKAPGAFLSKRIWNSLKEPFITEINSGGLIMLNDLLLRFGAPGIKYVLDLCAESDRHPVAFYCTAGKDRTGIITAIILSVCGAKLEDIVEDYSLSANVYAEMNDHKAMVGALSQ-RNLDAKTFLGAPPEVMADTLLAMKENYGGVEGYCDWIGFGPERREKLRKALME 423
BLAST of EWM29020.1 vs. NCBI_GenBank
Match: gi|1210530770|dbj|GAX10721.1| (hypothetical protein FisN_14Lh237 [Fistulifera solaris]) HSP 1 Score: 188.348 bits (477), Expect = 6.674e-52 Identity = 104/244 (42.62%), Postives = 147/244 (60.25%), Query Frame = 0
Query: 181 RSEKELGMDDQMNSSAT---KRGCGGKNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKAL 421
R EK L +D ++ + C +AET+ D GQ +RHF+S+++E Y +G R+ KR ++ G +S+R R A+ FL+ IN GL +LN+LLL Y+ P +R VLEL +D+ R+PIA YCTAGKDRTG++ ++LA GV S I EDY LS YA+++D +AMVGAL Q NLD + FL AP +V+ L IE ++GS++GY D IGF D R L+ A+
Sbjct: 157 RLEKALTVDAEVEDDGDCGYETDCAQDDAETMVYD------AGQNRK-ERHFVSLMNEFKYVKGTLSRVRKRDITKSILKSPGAILSRRVRSSAKKPFLDEINGGGLQMLNELLLRYANPGIRHVLELCADRNRHPIAFYCTAGKDRTGIIAAIILALCGVKSEDIVEDYTLSANVYAEMNDHQAMVGALSQ-RNLDAKTFLGAPPAVMRDILVAIETEYGSVDGYCDWIGFGPDMREKLRDAV 392 HSP 2 Score: 69.3218 bits (168), Expect = 3.349e-9 Identity = 49/127 (38.58%), Postives = 67/127 (52.76%), Query Frame = 0
Query: 129 LERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKELGMDDQ-MNSSATKRGCGGKNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAA 254
L++VKN RDL+SVR S I+ GRI+R G +S A+EEDI+ + + FKTL+DLRS EL D M K E R G+ L+ + V + + R VFKRL + +K A
Sbjct: 25 LQKVKNARDLASVRNSPIQPGRIFRMGRVSDATEEDIQLLFQKVGFKTLVDLRSPTELKDDPTLMREDVFKEFTNVVWQERGR---------GKEGCLRE--LKVGEGPVRSRNVFKRLMQDRKTAV 140
BLAST of EWM29020.1 vs. NCBI_GenBank
Match: gi|1210518728|dbj|GAX22604.1| (hypothetical protein FisN_14Hh237 [Fistulifera solaris]) HSP 1 Score: 188.348 bits (477), Expect = 2.184e-51 Identity = 104/243 (42.80%), Postives = 146/243 (60.08%), Query Frame = 0
Query: 181 RSEKELGMD--DQMNSSATKRGCGGKNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKAL 421
R E+ L +D D + C +AET+ D GQ +RHF+S+++E Y +G R+ KR ++ G +S+R R A+ FL+ IN GL +LN+LLL Y+ P +R VLEL +D+ R+PIA YCTAGKDRTG++ ++LA GV S I EDY LS YA+++D +AMVGAL Q NLD + FL AP +V+ L IE ++GS+EGY D IGF + R L+ A+
Sbjct: 208 RLEQALTVDAEDDGDCGYETTDCAQDDAETMVYD------AGQNRK-ERHFVSLMNEFKYVKGTLSRVRKRDITKSILKSPGAILSRRVRSSAKKPFLDEINGGGLQMLNELLLRYANPGIRHVLELCADRNRHPIAFYCTAGKDRTGIIAAIILALCGVKSEDIVEDYTLSANVYAEMNDHQAMVGALSQ-RNLDAKTFLGAPPAVMRDILVAIETEYGSVEGYCDWIGFGPEMREKLRDAV 442 HSP 2 Score: 69.707 bits (169), Expect = 2.642e-9 Identity = 49/130 (37.69%), Postives = 68/130 (52.31%), Query Frame = 0
Query: 126 GIKLERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKELGMDDQ-MNSSATKRGCGGKNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAA 254
+ L++VKN RDL+SVR S I+ GRI+R G +S A+EEDI+ + + FKTL+DLRS EL D M K E R G+ L+ + V + + R VFKRL + +K A
Sbjct: 73 NLPLQKVKNARDLASVRNSPIQPGRIFRMGRVSDATEEDIQLLFQKVGFKTLVDLRSPTELKDDPTLMREDVFKEFTNVVWQERGR---------GKEGCLRE--LKVGEGPVRSRNVFKRLMQDRKTAV 191
BLAST of EWM29020.1 vs. NCBI_GenBank
Match: gi|223995653|ref|XP_002287500.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976616|gb|EED94943.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 184.882 bits (468), Expect = 2.295e-50 Identity = 93/198 (46.97%), Postives = 129/198 (65.15%), Query Frame = 0
Query: 226 QRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKALRE 423
+RHF+S+++E Y RG ++ KR A + +SK AR + FL+ IN GLP+LN+LLL + P ++ VL+L+SDK R+P+A YCTAGKDRTG++ ++LA LG + I EDY LS YA+++D KAMVGAL Q +LD + FL AP V++ TL I + +GS+EGY D IGF + R LK AL E
Sbjct: 214 ERHFVSIMNEVKYVRGTLSKVRKRDIAKTIIKSPTAIISKTARENIKKPFLDEINGGGLPMLNELLLRFGAPGIKYVLDLVSDKSRHPVAFYCTAGKDRTGMIAAIILALLGTEDEYIVEDYSLSANVYAEMNDHKAMVGALSQ-RSLDAKTFLGAPPQVMKDTLENIRRTYGSVEGYCDYIGFDANSRERLKYALTE 410
BLAST of EWM29020.1 vs. NCBI_GenBank
Match: gi|397627524|gb|EJK68506.1| (hypothetical protein THAOC_10304 [Thalassiosira oceanica]) HSP 1 Score: 181.415 bits (459), Expect = 2.456e-49 Identity = 94/198 (47.47%), Postives = 128/198 (64.65%), Query Frame = 0
Query: 226 QRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKALRE 423
+RHF+S+++E Y RG +L KR + VSK+AR + FL+ IN GLP+LN+LLL + P ++ VL+L+SDK R+P+A YCTAGKDRTG++ ++L+ LG + AI EDY LS YA+++D KAMVGAL Q +LD + FL AP V+ TL I + +GS+E YLD IGF R LK AL E
Sbjct: 196 ERHFVSIMNELKYVRGTLSKLRKRDVVKTIIKSPTTLVSKQARDDIKKPFLDEINSGGLPMLNELLLTFGAPGIKYVLDLISDKNRHPVAFYCTAGKDRTGVIAAVILSLLGAEDDAIVEDYSLSANVYAEMNDHKAMVGALSQ-RSLDAKTFLGAPPQVMRDTLTNIRESYGSVEEYLDSIGFDAQCRDRLKYALTE 392
BLAST of EWM29020.1 vs. NCBI_GenBank
Match: gi|219117077|ref|XP_002179333.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409224|gb|EEC49156.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 182.956 bits (463), Expect = 6.595e-49 Identity = 96/220 (43.64%), Postives = 137/220 (62.27%), Query Frame = 0
Query: 201 CGGKNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKA 420
C + ET++ S T Q + +RHF+S+++E Y +G +L KR A A SK+AR + FL+ IND GLP+LN+LLL + P ++ VLEL +D+ R+P+A YCTAGKDRTG++ ++LA G + I EDY LS YA+++D +AMVGAL Q +LDP+ FL AP V+ TL IE+ +GS+EGY IGF +K+ L +A
Sbjct: 266 CDEDDPETMQ--ESTVLRTYQGNRKERHFVSLMNEFKYVKGTVGKLRKRDLAKAALRSPSAIFSKKARTAVKKPFLDEINDGGLPMLNELLLRFGAPGIKYVLELCADRTRHPVAFYCTAGKDRTGMLTAIILALCGTKAEDIVEDYSLSANVYAEMNDHQAMVGALSQ-RSLDPKTFLGAPPQVMRDTLLAIEENYGSVEGYCTWIGFGPEKQQKLIQA 482
BLAST of EWM29020.1 vs. NCBI_GenBank
Match: gi|303275826|ref|XP_003057207.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226461559|gb|EEH58852.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 135.961 bits (341), Expect = 1.536e-32 Identity = 100/323 (30.96%), Postives = 154/323 (47.68%), Query Frame = 0
Query: 127 IKLERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKEL----------------------GMDDQMNSSATKRGCGG---KNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERY-PIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGA--LEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKAL 421
+ LE V N RDL+S GS I GR++RT ASE D + K L+DLRSE E G+DD + K + ++ +D + + L R+ +++ Y ++ RL +K A + ++ +F+ +N GLPLLN+++++ SGP +R L++++ P A YC AGKDRTGLV L L G+ I EDY S+ KA +G +E+ N+D +F +P++V+E LAY++ GS++GYLD IGF R AL++AL
Sbjct: 54 VSLESVLNFRDLASAGGS-IAPGRVFRTATPGNASEADAAIVLNDLGVKRLLDLRSEDEFEADPGPLQSAFPEIISFTRNVDGVDDPLLRKYGKEAYDAYLRRQSDAAFLDGIDDAT--RAGALVRYHAPLLEYERYYLAIYDRLTAVEKVKAAVFTAQAFLYDDTNQK--ELFVGKVNAGGLPLLNEVMVDGSGPEIRAALKVIAKSTAAAPTAFYCKAGKDRTGLVAALTLHCAGLSEDEITEDYHKSEGT------GKAALGGGRIERGVNIDYSRFYGSPKAVMEGVLAYVKTNHGSVDGYLDSIGFDASDREALREAL 365 The following BLAST results are available for this feature:
BLAST of EWM29020.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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