EWM29035.1, cds1628 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|585111553|gb|EWM29035.1| (transcription factor e2f7 [Nannochloropsis gaditana]) HSP 1 Score: 819.305 bits (2115), Expect = 0.000e+0 Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0
Query: 1 MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGGPRDFPGVPGLTPNRRETAGGEGGEGGEEKRRGPKGGKGAEGERGHGKRRYRGKARGLQGEKGGGEGGKEGGKEGGKEGGEEGGDTARVGAKVEEEEAGLGKTGGEGGAEALLSGTAAESQEGGTKEEAEAGEHAFPPPPAPSITTLGRPALVDATSEIPLLPPVDFLPHPGVVRQIRETHCLRPKGP 423
MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGGPRDFPGVPGLTPNRRETAGGEGGEGGEEKRRGPKGGKGAEGERGHGKRRYRGKARGLQGEKGGGEGGKEGGKEGGKEGGEEGGDTARVGAKVEEEEAGLGKTGGEGGAEALLSGTAAESQEGGTKEEAEAGEHAFPPPPAPSITTLGRPALVDATSEIPLLPPVDFLPHPGVVRQIRETHCLRPKGP
Sbjct: 1 MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGGPRDFPGVPGLTPNRRETAGGEGGEGGEEKRRGPKGGKGAEGERGHGKRRYRGKARGLQGEKGGGEGGKEGGKEGGKEGGEEGGDTARVGAKVEEEEAGLGKTGGEGGAEALLSGTAAESQEGGTKEEAEAGEHAFPPPPAPSITTLGRPALVDATSEIPLLPPVDFLPHPGVVRQIRETHCLRPKGP 423
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|553175965|ref|XP_005852346.1| (hypothetical protein NGA_2110100, partial [Nannochloropsis gaditana CCMP526] >gi|422296181|gb|EKU23480.1| hypothetical protein NGA_2110100, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 204.142 bits (518), Expect = 1.153e-61 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query: 1 MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQET 98
MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQET
Sbjct: 15 MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQET 112
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|553175973|ref|XP_005852347.1| (hypothetical protein NGA_2127500, partial [Nannochloropsis gaditana CCMP526] >gi|422296182|gb|EKU23481.1| hypothetical protein NGA_2127500, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 183.726 bits (465), Expect = 1.320e-53 Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 0
Query: 142 SLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGGPRDF 240
SLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGG F
Sbjct: 21 SLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGGRGTF 119
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|303278708|ref|XP_003058647.1| (hypothetical protein MICPUCDRAFT_58408 [Micromonas pusilla CCMP1545] >gi|226459807|gb|EEH57102.1| hypothetical protein MICPUCDRAFT_58408 [Micromonas pusilla CCMP1545]) HSP 1 Score: 157.918 bits (398), Expect = 2.060e-38 Identity = 102/262 (38.93%), Postives = 136/262 (51.91%), Query Frame = 0
Query: 2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNG--------VGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGE--------------------GEGKEDKRTEAEREEEE-------------RKEKSLGRLTQKFIQLFLVGYS-VISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGL 221
AA L VERRRIYDI+N+LES+ V RK KN Y W+G+ + + L +L G+K++ ED L+G +GG G V + E A G ++ GA E G GEGE + + +D T A + R+EKSLG L+QKF+QLFLV + V+SL AA LLGA A +KTKVRRLYDIAN+L+SL+LI K H+ DSRKP+F+W+G+
Sbjct: 185 AATKLGVERRRIYDIVNVLESVEVVVRKAKNKYTWHGIARMPNALDRLYREGVKEFGEDLALDGGDASGPSSPKRGGGGGSDARDAVEEEKEEKEKEAPG--RDAAGPSGAEEKDAKSGSSGEGEHDPSDGGGGDAKKDDKDDGEDSAKSSKDDETAAATASHKPGGGKEKEGGGDCRREKSLGLLSQKFVQLFLVSRARVVSLEAAARTLLGACADQAK---LKTKVRRLYDIANILSSLRLIEKTHLVDSRKPAFRWLGV 441
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|1026765554|gb|OAE26226.1| (hypothetical protein AXG93_3786s1050 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 155.221 bits (391), Expect = 5.312e-38 Identity = 95/245 (38.78%), Postives = 135/245 (55.10%), Query Frame = 0
Query: 2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGG--------------GGEGEGEGEGKE--------DKRTEAEREEEE-RKEKSLGRLTQKFIQLFLVGYS-VISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLS 222
AA L VERRRIYDI+N+LE + + RK KN Y W+G L L+ ++EA L+++ G +G R G T + E + GD + +G G G+ + E EG D+R + +E+ + R+EKSLG L+QKF+QLFLV + ++SL AA+ LLG + + +KTKVRRLYDIAN+L+SLQLI K H+T++RKP+FKW+G S
Sbjct: 111 AATRLGVERRRIYDIVNVLEGMEILVRKAKNRYTWHGFARLPQALQAMKEAALREY------------GLDGFR--GTAAATEEKDEAGSSGDENNCVKTKGLSSCKAGKSSNDSYKSSPSSPFSEAGDSQCEPEGNHNEAVSSLPDQRHKVTKEKADCRREKSLGLLSQKFVQLFLVSQTQIVSLEDAAKILLGDSTEACK---LKTKVRRLYDIANILSSLQLIEKTHMTENRKPAFKWLGAS 338
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|308807094|ref|XP_003080858.1| (Dp_E2F-Like (IC) [Ostreococcus tauri] >gi|55978012|gb|AAV68606.1| DP-E2F-like protein [Ostreococcus tauri] >gi|116059319|emb|CAL55026.1| E2F Family [Ostreococcus tauri]) HSP 1 Score: 150.984 bits (380), Expect = 5.085e-37 Identity = 93/232 (40.09%), Postives = 139/232 (59.91%), Query Frame = 0
Query: 2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGS--AGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVG-YSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGL--SLGEIYA 228
AA L VERRRIYD+ N+LES+ +ERK KN Y W+GV+ L + LK+L+E+GL+++ D L+G G +G + G T++G + S + T + + G G G+G + + + R+EKSLG L+QKF+QLFL +V+SL AA ++G + ++ +KTK+RRLYDIAN+L SL+LI KVHV ++RKP+F W+ S+ E+ A
Sbjct: 64 AATRLGVERRRIYDVANVLESVEVLERKAKNQYTWHGVRRLPECLKRLKESGLREFGTDVELDGSTSEGRDGEKEDG----TARGGDASDRSSPTNSSTINLDAKQRGEKVTGTKFFGQG-------RFAVSSASYDSRREKSLGLLSQKFVQLFLASKMNVVSLETAARIIMGEDDD--DEAKLKTKIRRLYDIANILCSLRLIRKVHVGETRKPAFLWLQRENSIAELIA 282
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|1199291948|gb|OUS47038.1| (DP-E2F-like protein [Ostreococcus tauri]) HSP 1 Score: 150.984 bits (380), Expect = 5.241e-37 Identity = 93/232 (40.09%), Postives = 139/232 (59.91%), Query Frame = 0
Query: 2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGS--AGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVG-YSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGL--SLGEIYA 228
AA L VERRRIYD+ N+LES+ +ERK KN Y W+GV+ L + LK+L+E+GL+++ D L+G G +G + G T++G + S + T + + G G G+G + + + R+EKSLG L+QKF+QLFL +V+SL AA ++G + ++ +KTK+RRLYDIAN+L SL+LI KVHV ++RKP+F W+ S+ E+ A
Sbjct: 64 AATRLGVERRRIYDVANVLESVEVLERKAKNQYTWHGVRRLPECLKRLKESGLREFGTDVELDGSTSEGRDGEKEDG----TARGGDASDRSSPTNSSTINLDAKQRGEKVTGTKFFGQG-------RFAVSSASYDSRREKSLGLLSQKFVQLFLASKMNVVSLETAARIIMGEDDD--DEAKLKTKIRRLYDIANILCSLRLIRKVHVGETRKPAFLWLQRENSIAELIA 282
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|168037084|ref|XP_001771035.1| (predicted protein [Physcomitrella patens] >gi|162677723|gb|EDQ64190.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 147.902 bits (372), Expect = 3.245e-35 Identity = 89/221 (40.27%), Postives = 120/221 (54.30%), Query Frame = 0
Query: 2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVGYS-VISLSGAAEKLLGANAQNLNDRG-MKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVG 220
AA L VERRRIYDI+N+LESI + RK KN Y W+G L L+ ++EA L R+ G+G+ S ++ D E + ++E + + K D R+EKSLG L+QKF+QLFLV S V+SL AA LLG + D +KTKVRRLYDIAN+L+SLQLI K H+ ++RKP+F+W+G
Sbjct: 142 AASRLGVERRRIYDIVNVLESIEVLIRKAKNRYTWHGSTRLPQALQTMKEAAL-------RVYGLGEFANTSADESRPTIVASN---CASSDDEDEERKTLPSQESEACASVQSQQSSAPKAKADC----------RREKSLGLLSQKFVQLFLVSQSQVVSLEDAARLLLG----DCKDASKLKTKVRRLYDIANILSSLQLIEKTHMAENRKPAFRWLG 338
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|947108688|gb|KRH57014.1| (hypothetical protein GLYMA_05G033400 [Glycine max]) HSP 1 Score: 142.51 bits (358), Expect = 4.372e-35 Identity = 88/220 (40.00%), Postives = 116/220 (52.73%), Query Frame = 0
Query: 2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLV-GYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVG 220
AA+ L VERRRIYDI+N+LESI + RK KN Y W G + TL++L+E GLK S + GS G D + E E G + + + E R+EKSL LTQ F++LF+ +ISL AA+ LLG +A N + M+TKVRRLYDIANVL+S+ LI K H TD+RKP+F+W+G
Sbjct: 45 AAIRLGVERRRIYDIVNVLESIGLLSRKAKNQYIWRGFVAIPHTLQELKEEGLKD--------------------------NSNFLRGS-GNDNDKVSDDEDDEETLSNPATGSQSDKLNPNSS--TLTKSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLG-DAHNTS--VMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLG 232
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|951001810|ref|XP_014507183.1| (PREDICTED: E2F transcription factor-like E2FE isoform X1 [Vigna radiata var. radiata]) HSP 1 Score: 143.28 bits (360), Expect = 4.612e-35 Identity = 87/221 (39.37%), Postives = 118/221 (53.39%), Query Frame = 0
Query: 2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAER-EEEERKEKSLGRLTQKFIQLFLV-GYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVG 220
AA L VERRRIYDI+N+LESI + RK KN Y W G + TL++L+E GL++ S + GS D + E E G + + K T+ + + E R+EKSL LTQ F++LF+ +ISL AA+ LLG +A N + KTKVRRLYDIANVL+S+ LI K H +D+RKP+F+W+G
Sbjct: 45 AATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGLRE--------------------------NSSSLRGSTNDDMYKVSDDEDDEETQSNAATGSQNDKLNP----KSTQPKSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLG-DAHNTSIMRSKTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLG 234 The following BLAST results are available for this feature:
BLAST of EWM29035.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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