EWM29035.1, cds1628 (CDS) Nannochloropsis gaditana

Overview
NameEWM29035.1
Unique Namecds1628
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1108505..1109724 +
Alignment locationCM002457.1:1110245..1110296 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29035.1
Producttranscription factor e2f7
Orig transcript idgnl|cribi|Naga_100071g1.7953.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1108505..1109724 +
CM002457.1supercontigCM002457.1:1110245..1110296 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005667transcription factor complex
Vocabulary: INTERPRO
TermDefinition
IPR015633E2F
IPR011991WHTH_DNA-bd_dom
IPR003316E2F_WHTH_DNA-bd_dom
Homology
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|585111553|gb|EWM29035.1| (transcription factor e2f7 [Nannochloropsis gaditana])

HSP 1 Score: 819.305 bits (2115), Expect = 0.000e+0
Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0
Query:    1 MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGGPRDFPGVPGLTPNRRETAGGEGGEGGEEKRRGPKGGKGAEGERGHGKRRYRGKARGLQGEKGGGEGGKEGGKEGGKEGGEEGGDTARVGAKVEEEEAGLGKTGGEGGAEALLSGTAAESQEGGTKEEAEAGEHAFPPPPAPSITTLGRPALVDATSEIPLLPPVDFLPHPGVVRQIRETHCLRPKGP 423
            MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGGPRDFPGVPGLTPNRRETAGGEGGEGGEEKRRGPKGGKGAEGERGHGKRRYRGKARGLQGEKGGGEGGKEGGKEGGKEGGEEGGDTARVGAKVEEEEAGLGKTGGEGGAEALLSGTAAESQEGGTKEEAEAGEHAFPPPPAPSITTLGRPALVDATSEIPLLPPVDFLPHPGVVRQIRETHCLRPKGP
Sbjct:    1 MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGGPRDFPGVPGLTPNRRETAGGEGGEGGEEKRRGPKGGKGAEGERGHGKRRYRGKARGLQGEKGGGEGGKEGGKEGGKEGGEEGGDTARVGAKVEEEEAGLGKTGGEGGAEALLSGTAAESQEGGTKEEAEAGEHAFPPPPAPSITTLGRPALVDATSEIPLLPPVDFLPHPGVVRQIRETHCLRPKGP 423          
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|553175965|ref|XP_005852346.1| (hypothetical protein NGA_2110100, partial [Nannochloropsis gaditana CCMP526] >gi|422296181|gb|EKU23480.1| hypothetical protein NGA_2110100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 204.142 bits (518), Expect = 1.153e-61
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQET 98
            MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQET
Sbjct:   15 MAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQET 112          
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|553175973|ref|XP_005852347.1| (hypothetical protein NGA_2127500, partial [Nannochloropsis gaditana CCMP526] >gi|422296182|gb|EKU23481.1| hypothetical protein NGA_2127500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.726 bits (465), Expect = 1.320e-53
Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 0
Query:  142 SLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGGPRDF 240
            SLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGG   F
Sbjct:   21 SLGRLTQKFIQLFLVGYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLSLGEIYALPPFSIGGRGTF 119          
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|303278708|ref|XP_003058647.1| (hypothetical protein MICPUCDRAFT_58408 [Micromonas pusilla CCMP1545] >gi|226459807|gb|EEH57102.1| hypothetical protein MICPUCDRAFT_58408 [Micromonas pusilla CCMP1545])

HSP 1 Score: 157.918 bits (398), Expect = 2.060e-38
Identity = 102/262 (38.93%), Postives = 136/262 (51.91%), Query Frame = 0
Query:    2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNG--------VGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGE--------------------GEGKEDKRTEAEREEEE-------------RKEKSLGRLTQKFIQLFLVGYS-VISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGL 221
            AA  L VERRRIYDI+N+LES+  V RK KN Y W+G+  + + L +L   G+K++ ED  L+G          +GG  G      V    +  E  A G  ++     GA E     G  GEGE +                     +  +D  T A     +             R+EKSLG L+QKF+QLFLV  + V+SL  AA  LLGA A       +KTKVRRLYDIAN+L+SL+LI K H+ DSRKP+F+W+G+
Sbjct:  185 AATKLGVERRRIYDIVNVLESVEVVVRKAKNKYTWHGIARMPNALDRLYREGVKEFGEDLALDGGDASGPSSPKRGGGGGSDARDAVEEEKEEKEKEAPG--RDAAGPSGAEEKDAKSGSSGEGEHDPSDGGGGDAKKDDKDDGEDSAKSSKDDETAAATASHKPGGGKEKEGGGDCRREKSLGLLSQKFVQLFLVSRARVVSLEAAARTLLGACADQAK---LKTKVRRLYDIANILSSLRLIEKTHLVDSRKPAFRWLGV 441          
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|1026765554|gb|OAE26226.1| (hypothetical protein AXG93_3786s1050 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 155.221 bits (391), Expect = 5.312e-38
Identity = 95/245 (38.78%), Postives = 135/245 (55.10%), Query Frame = 0
Query:    2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGG--------------GGEGEGEGEGKE--------DKRTEAEREEEE-RKEKSLGRLTQKFIQLFLVGYS-VISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGLS 222
            AA  L VERRRIYDI+N+LE +  + RK KN Y W+G   L   L+ ++EA L+++            G +G R  G    T +  E  + GD     + +G      G                  G+ + E EG          D+R +  +E+ + R+EKSLG L+QKF+QLFLV  + ++SL  AA+ LLG + +      +KTKVRRLYDIAN+L+SLQLI K H+T++RKP+FKW+G S
Sbjct:  111 AATRLGVERRRIYDIVNVLEGMEILVRKAKNRYTWHGFARLPQALQAMKEAALREY------------GLDGFR--GTAAATEEKDEAGSSGDENNCVKTKGLSSCKAGKSSNDSYKSSPSSPFSEAGDSQCEPEGNHNEAVSSLPDQRHKVTKEKADCRREKSLGLLSQKFVQLFLVSQTQIVSLEDAAKILLGDSTEACK---LKTKVRRLYDIANILSSLQLIEKTHMTENRKPAFKWLGAS 338          
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|308807094|ref|XP_003080858.1| (Dp_E2F-Like (IC) [Ostreococcus tauri] >gi|55978012|gb|AAV68606.1| DP-E2F-like protein [Ostreococcus tauri] >gi|116059319|emb|CAL55026.1| E2F Family [Ostreococcus tauri])

HSP 1 Score: 150.984 bits (380), Expect = 5.085e-37
Identity = 93/232 (40.09%), Postives = 139/232 (59.91%), Query Frame = 0
Query:    2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGS--AGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVG-YSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGL--SLGEIYA 228
            AA  L VERRRIYD+ N+LES+  +ERK KN Y W+GV+ L + LK+L+E+GL+++  D  L+G    G +G +  G    T++G + S  +      T   +  + G    G    G+G       +   +    + R+EKSLG L+QKF+QLFL    +V+SL  AA  ++G +    ++  +KTK+RRLYDIAN+L SL+LI KVHV ++RKP+F W+    S+ E+ A
Sbjct:   64 AATRLGVERRRIYDVANVLESVEVLERKAKNQYTWHGVRRLPECLKRLKESGLREFGTDVELDGSTSEGRDGEKEDG----TARGGDASDRSSPTNSSTINLDAKQRGEKVTGTKFFGQG-------RFAVSSASYDSRREKSLGLLSQKFVQLFLASKMNVVSLETAARIIMGEDDD--DEAKLKTKIRRLYDIANILCSLRLIRKVHVGETRKPAFLWLQRENSIAELIA 282          
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|1199291948|gb|OUS47038.1| (DP-E2F-like protein [Ostreococcus tauri])

HSP 1 Score: 150.984 bits (380), Expect = 5.241e-37
Identity = 93/232 (40.09%), Postives = 139/232 (59.91%), Query Frame = 0
Query:    2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGS--AGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVG-YSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVGL--SLGEIYA 228
            AA  L VERRRIYD+ N+LES+  +ERK KN Y W+GV+ L + LK+L+E+GL+++  D  L+G    G +G +  G    T++G + S  +      T   +  + G    G    G+G       +   +    + R+EKSLG L+QKF+QLFL    +V+SL  AA  ++G +    ++  +KTK+RRLYDIAN+L SL+LI KVHV ++RKP+F W+    S+ E+ A
Sbjct:   64 AATRLGVERRRIYDVANVLESVEVLERKAKNQYTWHGVRRLPECLKRLKESGLREFGTDVELDGSTSEGRDGEKEDG----TARGGDASDRSSPTNSSTINLDAKQRGEKVTGTKFFGQG-------RFAVSSASYDSRREKSLGLLSQKFVQLFLASKMNVVSLETAARIIMGEDDD--DEAKLKTKIRRLYDIANILCSLRLIRKVHVGETRKPAFLWLQRENSIAELIA 282          
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|168037084|ref|XP_001771035.1| (predicted protein [Physcomitrella patens] >gi|162677723|gb|EDQ64190.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 147.902 bits (372), Expect = 3.245e-35
Identity = 89/221 (40.27%), Postives = 120/221 (54.30%), Query Frame = 0
Query:    2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLVGYS-VISLSGAAEKLLGANAQNLNDRG-MKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVG 220
            AA  L VERRRIYDI+N+LESI  + RK KN Y W+G   L   L+ ++EA L       R+ G+G+               S     ++  D  E  +   ++E         +     + K D           R+EKSLG L+QKF+QLFLV  S V+SL  AA  LLG    +  D   +KTKVRRLYDIAN+L+SLQLI K H+ ++RKP+F+W+G
Sbjct:  142 AASRLGVERRRIYDIVNVLESIEVLIRKAKNRYTWHGSTRLPQALQTMKEAAL-------RVYGLGEFANTSADESRPTIVASN---CASSDDEDEERKTLPSQESEACASVQSQQSSAPKAKADC----------RREKSLGLLSQKFVQLFLVSQSQVVSLEDAARLLLG----DCKDASKLKTKVRRLYDIANILSSLQLIEKTHMAENRKPAFRWLG 338          
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|947108688|gb|KRH57014.1| (hypothetical protein GLYMA_05G033400 [Glycine max])

HSP 1 Score: 142.51 bits (358), Expect = 4.372e-35
Identity = 88/220 (40.00%), Postives = 116/220 (52.73%), Query Frame = 0
Query:    2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAEREEEERKEKSLGRLTQKFIQLFLV-GYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVG 220
            AA+ L VERRRIYDI+N+LESI  + RK KN Y W G   +  TL++L+E GLK                            S  + GS G D  +    E   E       G + +               + E R+EKSL  LTQ F++LF+     +ISL  AA+ LLG +A N +   M+TKVRRLYDIANVL+S+ LI K H TD+RKP+F+W+G
Sbjct:   45 AAIRLGVERRRIYDIVNVLESIGLLSRKAKNQYIWRGFVAIPHTLQELKEEGLKD--------------------------NSNFLRGS-GNDNDKVSDDEDDEETLSNPATGSQSDKLNPNSS--TLTKSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLG-DAHNTS--VMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLG 232          
BLAST of EWM29035.1 vs. NCBI_GenBank
Match: gi|951001810|ref|XP_014507183.1| (PREDICTED: E2F transcription factor-like E2FE isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 143.28 bits (360), Expect = 4.612e-35
Identity = 87/221 (39.37%), Postives = 118/221 (53.39%), Query Frame = 0
Query:    2 AAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGVGKGGEEGGRMLGVVTFTSKGVEGSAGGDRQETGRGEGAREGGGGGGGGGEGEGEGEGKEDKRTEAER-EEEERKEKSLGRLTQKFIQLFLV-GYSVISLSGAAEKLLGANAQNLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTDSRKPSFKWVG 220
            AA  L VERRRIYDI+N+LESI  + RK KN Y W G   +  TL++L+E GL++                           S  + GS   D  +    E   E       G + +        K T+ +  + E R+EKSL  LTQ F++LF+     +ISL  AA+ LLG +A N +    KTKVRRLYDIANVL+S+ LI K H +D+RKP+F+W+G
Sbjct:   45 AATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGLRE--------------------------NSSSLRGSTNDDMYKVSDDEDDEETQSNAATGSQNDKLNP----KSTQPKSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLG-DAHNTSIMRSKTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLG 234          
The following BLAST results are available for this feature:
BLAST of EWM29035.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111553|gb|EWM29035.1|0.000e+0100.00transcription factor e2f7 [Nannochloropsis gaditan... [more]
gi|553175965|ref|XP_005852346.1|1.153e-61100.00hypothetical protein NGA_2110100, partial [Nannoch... [more]
gi|553175973|ref|XP_005852347.1|1.320e-5396.97hypothetical protein NGA_2127500, partial [Nannoch... [more]
gi|303278708|ref|XP_003058647.1|2.060e-3838.93hypothetical protein MICPUCDRAFT_58408 [Micromonas... [more]
gi|1026765554|gb|OAE26226.1|5.312e-3838.78hypothetical protein AXG93_3786s1050 [Marchantia p... [more]
gi|308807094|ref|XP_003080858.1|5.085e-3740.09Dp_E2F-Like (IC) [Ostreococcus tauri] >gi|55978012... [more]
gi|1199291948|gb|OUS47038.1|5.241e-3740.09DP-E2F-like protein [Ostreococcus tauri][more]
gi|168037084|ref|XP_001771035.1|3.245e-3540.27predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|947108688|gb|KRH57014.1|4.372e-3540.00hypothetical protein GLYMA_05G033400 [Glycine max][more]
gi|951001810|ref|XP_014507183.1|4.612e-3539.37PREDICTED: E2F transcription factor-like E2FE isof... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1632rna1632Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications