EWM29085.1, cds1608 (CDS) Nannochloropsis gaditana

Overview
NameEWM29085.1
Unique Namecds1608
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1062047..1062223 +
Alignment locationCM002457.1:1062402..1062662 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29085.1
ProductPrefoldin
Orig transcript idgnl|cribi|Naga_100024g23.4343.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1062047..1062223 +
CM002457.1supercontigCM002457.1:1062402..1062662 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0016272prefoldin complex
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0051082unfolded protein binding
Vocabulary: INTERPRO
TermDefinition
IPR009053Prefoldin
IPR016661PFDN4
IPR002777PFD_beta-like
Homology
BLAST of EWM29085.1 vs. NCBI_GenBank
Match: gi|585111604|gb|EWM29085.1| (Prefoldin [Nannochloropsis gaditana])

HSP 1 Score: 295.049 bits (754), Expect = 4.065e-101
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query:    1 MSTTGVMREVNPSQDKGKAKTPDEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLENS 145
            MSTTGVMREVNPSQDKGKAKTPDEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLENS
Sbjct:    1 MSTTGVMREVNPSQDKGKAKTPDEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLENS 145          
BLAST of EWM29085.1 vs. NCBI_GenBank
Match: gi|676387403|ref|XP_009036980.1| (hypothetical protein AURANDRAFT_26407 [Aureococcus anophagefferens] >gi|323452375|gb|EGB08249.1| hypothetical protein AURANDRAFT_26407 [Aureococcus anophagefferens])

HSP 1 Score: 129.413 bits (324), Expect = 4.908e-36
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 0
Query:   27 DVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLG-EAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLE 143
            DVEVRKEDQ +INEFGRLN +  E   D A L++ LE+ DDA TEL +G G  V+L LG E+F+DV ED+ATE+CE +QE++QA+++    E  KIA RQ ELK VLYGRFGS INLE
Sbjct:    3 DVEVRKEDQLLINEFGRLNAKMHERKADRAVLQKSLEEFDDATTELAMGDGDDVKLMLGGESFVDVGEDFATEYCEAEQEKIQAEMDHEDAEIEKIAARQKELKVVLYGRFGSQINLE 120          
BLAST of EWM29085.1 vs. NCBI_GenBank
Match: gi|669143670|ref|XP_008607397.1| (hypothetical protein SDRG_03541 [Saprolegnia diclina VS20] >gi|813102515|ref|XP_012193843.1| hypothetical protein SPRG_00354 [Saprolegnia parasitica CBS 223.65] >gi|530741094|gb|EQC39336.1| hypothetical protein SDRG_03541 [Saprolegnia diclina VS20] >gi|641541762|gb|KDO35507.1| hypothetical protein SPRG_00354 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 125.946 bits (315), Expect = 1.570e-34
Identity = 64/124 (51.61%), Postives = 92/124 (74.19%), Query Frame = 0
Query:   21 TPDEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLEN 144
             P +  +V+VRKEDQ+ INEFGR N++  ++ +++  LK++LE LDDA TE+M+G G  V+L +GE+F+ VSE+YA E+ E + E+ QAKVE+L  E+  +  RQ  LKKVLY RFG+SINLE+
Sbjct:    3 APQQEVEVDVRKEDQDRINEFGRNNSRLADVRDEVKALKDKLETLDDANTEIMMGEGDNVQLFIGESFVQVSEEYAQEYLEAQTEKTQAKVEKLQAEEASLEARQAALKKVLYARFGTSINLED 126          
BLAST of EWM29085.1 vs. NCBI_GenBank
Match: gi|224004486|ref|XP_002295894.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585926|gb|ACI64611.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 125.561 bits (314), Expect = 2.204e-34
Identity = 69/132 (52.27%), Postives = 91/132 (68.94%), Query Frame = 0
Query:   12 PSQDKGKAKTPDEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLE 143
            P  D G     +E  D EVR+EDQ+ INEFG+LN +  E+  ++A LK+ LEK+DDA TELM+G G  V L LGEA  + +ED ATE CE + E+ QA +++L +E+  I  +Q  LKKVLYGRFG+SINLE
Sbjct:    2 PEAD-GMILAKEEENDAEVRREDQDKINEFGQLNARLYEVRSEIARLKKLLEKIDDASTELMMGNGDKVMLRLGEAMFEATEDEATEFCEAEMEKHQAVLDDLDKEEADIVEKQAALKKVLYGRFGNSINLE 132          
BLAST of EWM29085.1 vs. NCBI_GenBank
Match: gi|219130366|ref|XP_002185338.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403253|gb|EEC43207.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 125.176 bits (313), Expect = 2.740e-34
Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 0
Query:   21 TPDEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLENS 145
              +E  D EVR+ DQ+ IN+F RLN +  E+  + A L++QLE+LDDA TELM+G G  V + LGEAF+  SED ATE CE + E++Q++VE L  E+  I   Q ELKK+LYGRFG SINLE+S
Sbjct:    3 AAEEENDNEVRRIDQQNINKFARLNARLHEVRAERANLQKQLERLDDASTELMMGSGDTVWMMLGEAFLATSEDDATEFCEGQVEKMQSRVERLKGEETTIVDEQAELKKILYGRFGKSINLEDS 127          
BLAST of EWM29085.1 vs. NCBI_GenBank
Match: gi|673028872|ref|XP_008868397.1| (hypothetical protein H310_05448 [Aphanomyces invadans] >gi|574476014|gb|ETW03013.1| hypothetical protein H310_05448 [Aphanomyces invadans])

HSP 1 Score: 120.939 bits (302), Expect = 1.194e-32
Identity = 64/124 (51.61%), Postives = 90/124 (72.58%), Query Frame = 0
Query:   21 TPDEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLEN 144
             P +  +V+VRKEDQE INEFGR N++  +L ++L  LKE+LE LDDA TE+M+G G  V+L +GE+F++VSE+ A E+ E + E+    V +L  E+ K+ +RQ  LKKVLY RFG+SINLE+
Sbjct:    3 APQQEVEVDVRKEDQERINEFGRNNSRLADLRDELKALKEKLETLDDANTEIMMGEGNNVQLFIGESFVEVSEEVAQEYLEAQTEKANDAVAKLAAEETKLESRQDALKKVLYARFGTSINLED 126          
BLAST of EWM29085.1 vs. NCBI_GenBank
Match: gi|298711393|emb|CBJ32536.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 120.553 bits (301), Expect = 1.438e-32
Identity = 61/111 (54.95%), Postives = 84/111 (75.68%), Query Frame = 0
Query:   33 EDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLE 143
            EDQ+ INEFGRLN + LE+ +D +++K+ L+KLDDA TELM G G  V L LG++FM+  E++AT++CER+QE+ Q+K+++L  E+  I  RQ  LKK LY RFGSSI LE
Sbjct:    9 EDQQKINEFGRLNTRLLEIRDDKSHIKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILLRQGVLKKELYARFGSSIQLE 119          
BLAST of EWM29085.1 vs. NCBI_GenBank
Match: gi|698820041|ref|XP_009843049.1| (hypothetical protein H257_16351 [Aphanomyces astaci] >gi|574101932|gb|ETV67490.1| hypothetical protein H257_16351 [Aphanomyces astaci])

HSP 1 Score: 120.168 bits (300), Expect = 2.400e-32
Identity = 63/124 (50.81%), Postives = 90/124 (72.58%), Query Frame = 0
Query:   21 TPDEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLEN 144
             P +  +V+VRKEDQ+ INEFGR N++  +L ++L  LKE+LE LDDA TE+M+G G  V+L +GE+F++VSE+ A E+ E + ++  A V +L  E+ K+  RQ  LKKVLY RFG+SINLE+
Sbjct:    3 APQQEVEVDVRKEDQDRINEFGRNNSRLADLRDELKALKEKLETLDDANTEIMMGAGDNVQLFIGESFVEVSEEDAQEYLEAQTDKANAVVSKLNAEESKLEARQDALKKVLYARFGTSINLED 126          
BLAST of EWM29085.1 vs. NCBI_GenBank
Match: gi|1173949611|gb|OQR97630.1| (hypothetical protein ACHHYP_10177 [Achlya hypogyna])

HSP 1 Score: 120.168 bits (300), Expect = 2.889e-32
Identity = 61/124 (49.19%), Postives = 91/124 (73.39%), Query Frame = 0
Query:   21 TPDEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLEN 144
             P +  +V+VRKEDQ+ INEFGR N++  ++ +++  LK++LE LDDA TE+M+G G  V+L +GE+F+ VSE+YA E+ E + E+ Q K+++L  E+  +  RQ  LKKVLY RFG+SINLE+
Sbjct:    3 APQQEVEVDVRKEDQDRINEFGRNNSRLADVRDEVKALKDKLETLDDANTEIMMGEGDNVQLFIGESFVQVSEEYAQEYLEAQTEKTQDKIKKLEAEEATLEARQSALKKVLYARFGTSINLED 126          
BLAST of EWM29085.1 vs. NCBI_GenBank
Match: gi|695425533|ref|XP_009529201.1| (hypothetical protein PHYSODRAFT_315748 [Phytophthora sojae] >gi|348675634|gb|EGZ15452.1| hypothetical protein PHYSODRAFT_315748 [Phytophthora sojae])

HSP 1 Score: 115.161 bits (287), Expect = 2.337e-30
Identity = 61/119 (51.26%), Postives = 86/119 (72.27%), Query Frame = 0
Query:   27 DVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLENS 145
            + +VRKEDQ  INEFGR N    E+ E    LK++L+ LDDA T+LM+G G  V+L +GE+F++ SED+A E+ E++ E+  A++++L  E+ K+  RQ  LKKVLYGRFG SINLE+S
Sbjct:    9 EADVRKEDQLRINEFGRNNASLHEIREQKKALKDKLDTLDDANTDLMMGEGDNVQLFIGESFVEASEDFAQEYLEKRVEEANAELKKLQAEESKLEARQAALKKVLYGRFGQSINLEDS 127          
The following BLAST results are available for this feature:
BLAST of EWM29085.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111604|gb|EWM29085.1|4.065e-101100.00Prefoldin [Nannochloropsis gaditana][more]
gi|676387403|ref|XP_009036980.1|4.908e-3660.17hypothetical protein AURANDRAFT_26407 [Aureococcus... [more]
gi|669143670|ref|XP_008607397.1|1.570e-3451.61hypothetical protein SDRG_03541 [Saprolegnia dicli... [more]
gi|224004486|ref|XP_002295894.1|2.204e-3452.27predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219130366|ref|XP_002185338.1|2.740e-3453.60predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|673028872|ref|XP_008868397.1|1.194e-3251.61hypothetical protein H310_05448 [Aphanomyces invad... [more]
gi|298711393|emb|CBJ32536.1|1.438e-3254.95conserved unknown protein [Ectocarpus siliculosus][more]
gi|698820041|ref|XP_009843049.1|2.400e-3250.81hypothetical protein H257_16351 [Aphanomyces astac... [more]
gi|1173949611|gb|OQR97630.1|2.889e-3249.19hypothetical protein ACHHYP_10177 [Achlya hypogyna... [more]
gi|695425533|ref|XP_009529201.1|2.337e-3051.26hypothetical protein PHYSODRAFT_315748 [Phytophtho... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1612rna1612Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications