EWM29067.1, cds1596 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29067.1 vs. NCBI_GenBank
Match: gi|585111586|gb|EWM29067.1| (succinate dehydrogenase flavoprotein subunit [Nannochloropsis gaditana]) HSP 1 Score: 1343.56 bits (3476), Expect = 0.000e+0 Identity = 647/647 (100.00%), Postives = 647/647 (100.00%), Query Frame = 0
Query: 1 MLRSVGKRLLGSVAQVQRRAIHASSARLAAISGVPPEGKVSSTPNAKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
MLRSVGKRLLGSVAQVQRRAIHASSARLAAISGVPPEGKVSSTPNAKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY
Sbjct: 1 MLRSVGKRLLGSVAQVQRRAIHASSARLAAISGVPPEGKVSSTPNAKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
BLAST of EWM29067.1 vs. NCBI_GenBank
Match: gi|585111587|gb|EWM29068.1| (succinate dehydrogenase flavoprotein subunit [Nannochloropsis gaditana]) HSP 1 Score: 1207.2 bits (3122), Expect = 0.000e+0 Identity = 577/577 (100.00%), Postives = 577/577 (100.00%), Query Frame = 0
Query: 71 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY
Sbjct: 1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
BLAST of EWM29067.1 vs. NCBI_GenBank
Match: gi|219113829|ref|XP_002186498.1| (succinate dehydrogenase flavoprotein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583348|gb|ACI65968.1| succinate dehydrogenase flavoprotein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 1011.91 bits (2615), Expect = 0.000e+0 Identity = 479/623 (76.89%), Postives = 538/623 (86.36%), Query Frame = 0
Query: 27 RLAAISGVPPEGKVSSTPN--AKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
R A++ V + +S++P+ YTVIDH YD VVVGAGG+GLRAAMG +EAGFKTACVTKLFPTRSHTVAAQGGINAALGNM EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +G+PFSRTE+GKIYQRAFGGQSL +GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+TTYFIEYFA+DL+M+ G CVG+ ALNMEDGT+HRIHA NTVLATGGYGR YFSCTSAHTCTGDGNAM +R GL +D EFVQFHPTGIYGAGCLITEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSR+MTMEIREGRG G +KDH++LHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH+GEVI K DG+ D V+PGLFA+GE+ACASVHGANRLGANSLLDIVVFGRA A RIA+IAKPGDK+ P+D G S+ +LDK+R+A G TA IR +MQ MQEHAAVYRT +LAEGK ID V+ ++D+ VTD+SL+WNTDL+E+LELRNLL+ A+TTMY AE RKESRGAHA ED+ RDD NWM HT++ FD T +T I YRP+H +TLDE+E K VPP RVY
Sbjct: 17 RRVAVTSVGSK-SLSTSPHLIGDYTVIDHTYDAVVVGAGGSGLRAAMGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYFIEYFAMDLLMNDQGECVGVVALNMEDGTIHRIHAKNTVLATGGYGRTYFSCTSAHTCTGDGNAMAMRQGLSNQDNEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRSMTMEIREGRGAGPKKDHIYLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVIRTKFDKDGNFSKDEVVPGLFASGESACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDKIADGPSDVGFGSIAELDKLRYAEGHATTADIRSEMQSVMQEHAAVYRTTQTLAEGKTAIDGVVDKFKDIAVTDKSLVWNTDLVETLELRNLLACASTTMYGAENRKESRGAHAHEDYPTRDDENWMKHTLSYFDESTGRTEIKYRPIHYYTLDEDECKTVPPVARVY 638
BLAST of EWM29067.1 vs. NCBI_GenBank
Match: gi|1210526878|dbj|GAX14526.1| (succinate dehydrogenase (ubiquinone) flavoprotein subunit [Fistulifera solaris]) HSP 1 Score: 1001.89 bits (2589), Expect = 0.000e+0 Identity = 477/628 (75.96%), Postives = 536/628 (85.35%), Query Frame = 0
Query: 21 IHASSARLAAISGVPPEG-KVSSTPNAKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
+ ++S R A V + + ST YTV+DH YD VVVGAGG+GLRAAMG +EAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +G+PFSRTE+GKIYQRAFGGQSLK+GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+TTYFIEYFALDL+MD +G CVG+ LNMEDG++HRIHA NTVLATGGYGRAYFSCTSAHTCTGDGNAM LR GL +D EFVQFHPTGIYGAGCL+TEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG +KDH++LHLDHLP DLLA+RLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI ++ G+ D ++PGLFAAGE A ASVHGANRLGANSLLDIVVFGRA ALRIA+ +KPGDK+P + ADAG S+E LD +R+ G+ + +R +MQ TMQEHAAVYRT + L EG KIDEV+ + D+ VTD+SL+WNTDL+E+LELRNLL+ A+TTM+ A RKESRGAHA ED RDD NWM HT+A FD +T KTT++YRPVH TLDE E + VPP RVY
Sbjct: 2 LSSASKRFALHQVVSKQANRCLSTMKGDYTVVDHTYDAVVVGAGGSGLRAAMGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYFIEYFALDLLMDDNGACVGVIVLNMEDGSIHRIHAKNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRKGLSNQDNEFVQFHPTGIYGAGCLMTEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPKKDHIYLHLDHLPADLLAQRLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVIKTVFESKGNFVGDGIVPGLFAAGEVASASVHGANRLGANSLLDIVVFGRACALRIAETSKPGDKIPDLKADAGFDSIEYLDNLRYKEGTCTPSQVRSEMQSTMQEHAAVYRTTELLEEGAKKIDEVVKKFDDVYVTDKSLIWNTDLVETLELRNLLACASTTMHGANNRKESRGAHAHEDHPNRDDENWMKHTLAYFDPETGKTTLNYRPVHNFTLDEEECQVVPPMARVY 629
BLAST of EWM29067.1 vs. NCBI_GenBank
Match: gi|676390327|ref|XP_009038442.1| (hypothetical protein AURANDRAFT_37947 [Aureococcus anophagefferens] >gi|323450812|gb|EGB06691.1| hypothetical protein AURANDRAFT_37947 [Aureococcus anophagefferens]) HSP 1 Score: 999.194 bits (2582), Expect = 0.000e+0 Identity = 497/633 (78.52%), Postives = 549/633 (86.73%), Query Frame = 0
Query: 16 VQRRAIHASSARLAAISGVPPEGKVSSTPNAKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGS-LDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
VQR + ++ L+ +SG+ YTV+DH YDV VVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNM+EDDW+WHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELES+GLPFSRT+DGKIYQRAFGGQSL YGKGGQAYRC AADRTGHAMLHTLYGRSLAF+TTYF+EYFALDLIMD +G CVGI A+NMEDGTLHRI+A+NTVLATGGYGRAYFSCTSAHTCTGDGNAM LRAGL EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVGK+ DH +LHLDHLP +LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI DGS +D D V+PGLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIADIA+PG VPP+PADA ++++ D+D +RF+SG TA +RK MQKTMQ+HAAVYRT +SLAEG KI + + + D+ VTDRSL+WNTDLIE++ELRNLL NAATTM+AAEARKESRGAHARED +R D WM HT+ FD T+KTT++YRP+H TLD +E VPP RVY
Sbjct: 7 VQRVSRSRNARALSTVSGL----------KGDYTVVDHSYDVCVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWKWHMYDTVKGSDWLGDQDAIHYMCREAPQAVLELESFGLPFSRTDDGKIYQRAFGGQSLDYGKGGQAYRCCAAADRTGHAMLHTLYGRSLAFDTTYFLEYFALDLIMDDEGSCVGIVAINMEDGTLHRINASNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGLAAEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKDADHCYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVIRQVTGPDGSVIDHDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAEPGAPVPPLPADAAEKTIADVDAIRFSSGPRPTADVRKDMQKTMQDHAAVYRTAESLAEGCEKIQKNVEAFADIGVTDRSLIWNTDLIETIELRNLLPNAATTMFAAEARKESRGAHAREDTPDRLDDEWMKHTMCYFDEATNKTTVTYRPIHYETLDADECPVVPPVARVY 629
BLAST of EWM29067.1 vs. NCBI_GenBank
Match: gi|1210531640|dbj|GAX09996.1| (succinate dehydrogenase (ubiquinone) flavoprotein subunit [Fistulifera solaris]) HSP 1 Score: 998.038 bits (2579), Expect = 0.000e+0 Identity = 476/628 (75.80%), Postives = 534/628 (85.03%), Query Frame = 0
Query: 21 IHASSARLAAISGVPPEG-KVSSTPNAKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
+ ++S R A V + + ST YTV+DH YD VVVGAGG+GLRAAMG +EAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +G+PFSRTE+GKIYQRAFGGQSLK+GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+TTYFIEYFALDL+MD +G CVG+ LNMEDG++HRIHA NTVLATGGYGRAYFSCTSAHTCTGDGNAM LR GL +D EFVQFHPTGIYGAGCL+TEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG +KDH++LHLDHLP DLLA+RLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI + G+ D ++PGLFAAGE A ASVHGANRLGANSLLDIVVFGRA ALRIA+ +KPGDK+P + ADAG S+E LD +R+ G+ + +R +MQ TMQEHAAVYRT + L G KIDEV+ + D+ VTD+SL+WNTDL+E+LELRNLL+ A+TTM+ A RKESRGAHA ED RDD NWM HT+A FD +T KTT++YRPVH TLDE E + VPP RVY
Sbjct: 2 LSSASKRFALHQVVSKQANRCLSTMKGDYTVVDHTYDAVVVGAGGSGLRAAMGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYFIEYFALDLLMDDNGACVGVIVLNMEDGSIHRIHAKNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRKGLSNQDNEFVQFHPTGIYGAGCLMTEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPKKDHIYLHLDHLPADLLAQRLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVIKTVFDSKGNFVEDGIVPGLFAAGEVASASVHGANRLGANSLLDIVVFGRACALRIAETSKPGDKIPDLKADAGFDSIEYLDNLRYKEGTCTPSQVRSEMQSTMQEHAAVYRTTELLEGGAKKIDEVVKKFDDVYVTDKSLIWNTDLVETLELRNLLACASTTMHGANNRKESRGAHAHEDHPNRDDENWMKHTLAYFDPETGKTTLNYRPVHDFTLDEEECQVVPPMARVY 629
BLAST of EWM29067.1 vs. NCBI_GenBank
Match: gi|224010078|ref|XP_002293997.1| (succinate dehydrogenase flavoprotein subunit [Thalassiosira pseudonana CCMP1335] >gi|220970669|gb|EED89006.1| succinate dehydrogenase flavoprotein subunit [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 997.653 bits (2578), Expect = 0.000e+0 Identity = 479/637 (75.20%), Postives = 541/637 (84.93%), Query Frame = 0
Query: 13 VAQVQRRAIHASSARLAAISGVPPEG--KVSSTPNAKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
++ RRA + + +LA+ + P +S++ YT++DH YD +V+GAGG+GLRAAMG +EAGFKTACV+KLFPTRSHTVAAQGGINAALGNM DDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +GLPFSRTE+GKIYQRAFGGQSL +GKGGQA+RC AADRTGHAMLHTLYGRSLAF+TTYFIEYFA+DL+M DG+CVG ALNMEDGTLHRI A NTVLATGGYGR YFSCTSAHTCTGDGNAM +RAGL +D EFVQFHPTGIYGAGCLITEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG +KDH +LHLDHLP +LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI ADGS + D V+PGLFAAGEAACASVHGANRLGANSLLDIVVFGRA A RIA+IAKPGD + PAD G SV +LDK+RFA+GST T+ IR +MQ MQ+ AAVYRT++ LAEGK +IDEV+ ++ D+ VTD+SL+WNTDL+E+LELRNLL AATTM++AE RKESRGAHA E++ +R D WM HT+A FD KT I YRP+H +TLDE E K VPP RVY
Sbjct: 2 LSAFARRA-SSKATKLASTAPTPTTAVRSLSTSTTGDYTIVDHTYDALVIGAGGSGLRAAMGLSEAGFKTACVSKLFPTRSHTVAAQGGINAALGNMGPDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAHRCCAAADRTGHAMLHTLYGRSLAFDTTYFIEYFAMDLLMTPDGQCVGAMALNMEDGTLHRIKAKNTVLATGGYGRTYFSCTSAHTCTGDGNAMAMRAGLANQDAEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPKKDHCYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVIRTDFNADGSFNSDVVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDAIADAPADVGMDSVAELDKLRFATGSTPTSVIRGEMQHLMQDKAAVYRTEELLAEGKKEIDEVVQSFNDVHVTDKSLIWNTDLVETLELRNLLGCAATTMHSAENRKESRGAHAHENYPDRLDDEWMKHTLAYFDEKEGKTKIGYRPIHYYTLDEEECKTVPPVARVY 637
BLAST of EWM29067.1 vs. NCBI_GenBank
Match: gi|568029728|gb|ETM03646.1| (succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica]) HSP 1 Score: 985.326 bits (2546), Expect = 0.000e+0 Identity = 494/650 (76.00%), Postives = 547/650 (84.15%), Query Frame = 0
Query: 1 MLRSVGKRLLGSVAQVQRRAIHASSARLAAISGVPPEGKVSSTPNAKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKA---DGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
MLRS + + A V+ A + R S P G +S +KYT++DHEYD VVVGAGGAGLRAAMG AEAG KTAC++KLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP AV ELE +GLPFSRTE+GKIYQR FGGQSL++GKGGQA R ACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIM+ G CVG+ A NMEDGT HR H NNTVLATGGYGRAYFSCTSAHTCTGDG M LRAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGK KDH+FLHLDHLPP+LL ERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGI TNH GEV+ P G L PD ++PGLFAAGEAACASVHGANRLGANSLLD+VVFGRA ALRIA++ KPG+K PMP D G +++ED+DK+R+A GS +TA +R +MQKTMQ AAVYRTQ+SL GK KIDEV+ + D+KVTDRSL+WNTDL E+LELRNLL+ A+ TM+ AEARKESRGAHAREDF+ERDD NWM HT+A D D KT I+YR V TLDENE K VPPF RVY
Sbjct: 1 MLRSSQMKQALAKAMVRPTATRGFAVR----SSKPLAGVETSALTSKYTIVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACISKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPEAVRELEDFGLPFSRTEEGKIYQRPFGGQSLEFGKGGQARRTACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECVGVMAFNMEDGTFHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKNKDHIFLHLDHLPPELLHERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIATNHMGEVVVPDVDGLPEPGKLYPDKIVPGLFAAGEAACASVHGANRLGANSLLDLVVFGRACALRIAELTKPGEKKRPMPKDGGLKAIEDVDKLRYADGSISTAELRLEMQKTMQVDAAVYRTQESLEAGKEKIDEVVPKFNDIKVTDRSLIWNTDLTETLELRNLLACASCTMHGAEARKESRGAHAREDFTERDDVNWMKHTVAYHD-DEGKTHIAYRAVQDQTLDENECKHVPPFARVY 645
BLAST of EWM29067.1 vs. NCBI_GenBank
Match: gi|635367640|emb|CCI44157.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 984.941 bits (2545), Expect = 0.000e+0 Identity = 486/643 (75.58%), Postives = 543/643 (84.45%), Query Frame = 0
Query: 9 LLGSVAQVQRRAIHASSARLAAISGVPPEGKVSSTPNAKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKK----ADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
L G++ V+ R A S P G V++ +KYT+IDHEYD V+VGAGGAGLRAAMG AEAG KTAC+TKLFPTRSHTVAAQGGINAALGNMT DDWRWHMYDTVKGSDWLGDQDAIHYMCREAP AV ELES+GLPFSRT+DGKIYQRAFGGQSL YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLI++ DG CVG+ A NMEDGT HR H NNTVLATGGYGRAYFSCTSAHTCTGDG M LRAG+P++DPEF+QFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDH++LHLDHLP ++LAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTN+ GEVI P KK A + D ++ GL+AAGEA CASVHGANRLGANSLLD+VVFGRA ALRIA+ K G+ PMP D G +S+E +D +R A+G TA +R +MQK MQ AAVYRTQ +L GK KID+V+ + D+KVTDRSL+WNTDLIE++EL+NLL+ AA TM+AAEARKESRGAHAREDF+ERDD+NWM HT+A F + +TTI+YR VH TLDE E K VPPF RVY
Sbjct: 2 LRGTLRHVKERTRKPFHRTFAIQSSQQPSGSVTTDLTSKYTIIDHEYDAVIVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTVDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPDAVRELESFGLPFSRTDDGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLILNDDGDCVGVIAFNMEDGTFHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGVPLQDPEFIQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHIYLHLDHLPAEVLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYMGEVIIPDKKSSRVAANEMCSDRILKGLYAAGEAGCASVHGANRLGANSLLDLVVFGRACALRIAETTKAGEVKRPMPRDGGLKSIEMVDSLRHANGDVPTAELRLEMQKIMQADAAVYRTQSTLEAGKKKIDQVVPKFNDIKVTDRSLIWNTDLIETVELKNLLACAACTMHAAEARKESRGAHAREDFTERDDSNWMKHTLA-FHGEEGQTTIAYRKVHDFTLDEKECKKVPPFARVY 643
BLAST of EWM29067.1 vs. NCBI_GenBank
Match: gi|675161755|ref|XP_008889762.1| (succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica INRA-310] >gi|566034620|gb|ETI57531.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica P1569] >gi|567972279|gb|ETK97267.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica] >gi|568000605|gb|ETL50618.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica] >gi|568060415|gb|ETM56947.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica] >gi|568108971|gb|ETN23578.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica INRA-310] >gi|570338328|gb|ETO86276.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica P1976] >gi|570962322|gb|ETP27301.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica CJ01A1] >gi|970644831|gb|KUF85516.1| Succinate dehydrogenase flavoprotein subunit [Phytophthora nicotianae] >gi|970651460|gb|KUF90274.1| hypothetical protein AM588_10002730 [Phytophthora nicotianae]) HSP 1 Score: 983.786 bits (2542), Expect = 0.000e+0 Identity = 487/623 (78.17%), Postives = 536/623 (86.04%), Query Frame = 0
Query: 28 LAAISGVPPEGKVSSTPNAKYTVIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKA---DGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
A S P G +S +KYT++DHEYD VVVGAGGAGLRAAMG AEAG KTAC++KLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP AV ELE +GLPFSRTE+GKIYQR FGGQSL++GKGGQA R ACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIM+ G CVG+ A NMEDGT HR H NNTVLATGGYGRAYFSCTSAHTCTGDG M LRAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGK KDH+FLHLDHLPP+LL ERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGI TNH GEV+ P G L PD ++PGLFAAGEAACASVHGANRLGANSLLD+VVFGRA ALRIA++ KPG+K PMP D G +++ED+DK+R+A GS +TA +R +MQKTMQ AAVYRTQ+SL GK KIDEV+ + D+KVTDRSL+WNTDL E+LELRNLL+ A+ TM+ AEARKESRGAHAREDF+ERDD NWM HT+A D D KT I+YR V TLDENE K VPPF RVY
Sbjct: 24 FAVRSSKPLAGVETSALTSKYTIVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACISKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPEAVRELEDFGLPFSRTEEGKIYQRPFGGQSLEFGKGGQARRTACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECVGVMAFNMEDGTFHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKNKDHIFLHLDHLPPELLHERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIATNHMGEVVVPDVDGLPEPGKLYPDKIVPGLFAAGEAACASVHGANRLGANSLLDLVVFGRACALRIAELTKPGEKKRPMPKDGGLKAIEDVDKLRYADGSISTAELRLEMQKTMQVDAAVYRTQESLEAGKEKIDEVVPKFNDIKVTDRSLIWNTDLTETLELRNLLACASCTMHGAEARKESRGAHAREDFTERDDVNWMKHTVAYHD-DEGKTHIAYRAVQDQTLDENECKHVPPFARVY 645 The following BLAST results are available for this feature:
BLAST of EWM29067.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|