EWM29068.1, cds1595 (CDS) Nannochloropsis gaditana

Overview
NameEWM29068.1
Unique Namecds1595
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1032091..1033460 +
Alignment locationCM002457.1:1033717..1033842 +
Alignment locationCM002457.1:1033963..1034200 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29068.1
Productsuccinate dehydrogenase flavoprotein subunit
Orig transcript idgnl|cribi|Naga_100024g37.4326.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1032091..1033460 +
CM002457.1supercontigCM002457.1:1033717..1033842 +
CM002457.1supercontigCM002457.1:1033963..1034200 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0022900electron transport chain
GO:0006099tricarboxylic acid cycle
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR003952FRD_SDH_FAD_BS
IPR014006Succ_Dhase_FrdA_Gneg
IPR011281Succ_DH_flav_su_fwd
IPR015939Fum_Rdtase/Succ_DH_flav-like_C
IPR027477Succ_DH/fumarate_Rdtase_cat
IPR003953FAD_bind_dom
Homology
BLAST of EWM29068.1 vs. NCBI_GenBank
Match: gi|585111586|gb|EWM29067.1| (succinate dehydrogenase flavoprotein subunit [Nannochloropsis gaditana])

HSP 1 Score: 1207.2 bits (3122), Expect = 0.000e+0
Identity = 577/577 (100.00%), Postives = 577/577 (100.00%), Query Frame = 0
Query:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
            MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY
Sbjct:   71 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647          
BLAST of EWM29068.1 vs. NCBI_GenBank
Match: gi|585111587|gb|EWM29068.1| (succinate dehydrogenase flavoprotein subunit [Nannochloropsis gaditana])

HSP 1 Score: 1203.35 bits (3112), Expect = 0.000e+0
Identity = 577/577 (100.00%), Postives = 577/577 (100.00%), Query Frame = 0
Query:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
            MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY
Sbjct:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577          
BLAST of EWM29068.1 vs. NCBI_GenBank
Match: gi|676390327|ref|XP_009038442.1| (hypothetical protein AURANDRAFT_37947 [Aureococcus anophagefferens] >gi|323450812|gb|EGB06691.1| hypothetical protein AURANDRAFT_37947 [Aureococcus anophagefferens])

HSP 1 Score: 978.008 bits (2527), Expect = 0.000e+0
Identity = 467/574 (81.36%), Postives = 512/574 (89.20%), Query Frame = 0
Query:    5 EAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGS-LDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
            EAGFKTACVTKLFPTRSHTVAAQGGINAALGNM+EDDW+WHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELES+GLPFSRT+DGKIYQRAFGGQSL YGKGGQAYRC  AADRTGHAMLHTLYGRSLAF+TTYF+EYFALDLIMD +G CVGI A+NMEDGTLHRI+A+NTVLATGGYGRAYFSCTSAHTCTGDGNAM LRAGL  EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVGK+ DH +LHLDHLP +LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH GEVI      DGS +D D V+PGLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIADIA+PG  VPP+PADA ++++ D+D +RF+SG   TA +RK MQKTMQ+HAAVYRT +SLAEG  KI + +  + D+ VTDRSL+WNTDLIE++ELRNLL NAATTM+AAEARKESRGAHARED  +R D  WM HT+  FD  T+KTT++YRP+H  TLD +E   VPP  RVY
Sbjct:   56 EAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWKWHMYDTVKGSDWLGDQDAIHYMCREAPQAVLELESFGLPFSRTDDGKIYQRAFGGQSLDYGKGGQAYRCCAAADRTGHAMLHTLYGRSLAFDTTYFLEYFALDLIMDDEGSCVGIVAINMEDGTLHRINASNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGLAAEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKDADHCYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVIRQVTGPDGSVIDHDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAEPGAPVPPLPADAAEKTIADVDAIRFSSGPRPTADVRKDMQKTMQDHAAVYRTAESLAEGCEKIQKNVEAFADIGVTDRSLIWNTDLIETIELRNLLPNAATTMFAAEARKESRGAHAREDTPDRLDDEWMKHTMCYFDEATNKTTVTYRPIHYETLDADECPVVPPVARVY 629          
BLAST of EWM29068.1 vs. NCBI_GenBank
Match: gi|698779553|ref|XP_009822820.1| (succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Aphanomyces astaci] >gi|574122481|gb|ETV87957.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Aphanomyces astaci])

HSP 1 Score: 968.763 bits (2503), Expect = 0.000e+0
Identity = 458/577 (79.38%), Postives = 512/577 (88.73%), Query Frame = 0
Query:    4 AEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLD---PDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
            AEAGFKTAC+TKLFPTRSHTVAAQGGINAAL NMTEDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV ELE+YGLPFSRT++GKIYQRAFGGQSL YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T YFIEYFALDLIM+ +G C G+ ALNMEDGT+HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M LRAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVGKEKDH++LHLDHLPP+LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTN+FGEV+ P       ++   PD V+ GLFAAGEAA ASVHGANRLGANSLLDIVVFGRA ALRIADI+KPG+   P+P +AG +S+  +D +R+A+G+  TA +R +MQKTMQ  AAVYRTQ++LAEG VKID +   ++D++VTDRSL+WNTDLIE++EL+NLL+ A+ TM+ AEARKESRGAHAREDFS RDD NWM HT+A  D +T KT I+YRPVH HTLDE+E K V P  RVY
Sbjct:   52 AEAGFKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEAYGLPFSRTDEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTEYFIEYFALDLIMNDEGECCGVIALNMEDGTIHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKEKDHIYLHLDHLPPELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYFGEVVVPDTTGLPDVNKTYPDKVVKGLFAAGEAASASVHGANRLGANSLLDIVVFGRAAALRIADISKPGEAKRPLPRNAGDQSLHMVDTIRYANGAIPTAELRLEMQKTMQSDAAVYRTQETLAEGVVKIDAITPKFKDIQVTDRSLIWNTDLIETIELKNLLACASATMHGAEARKESRGAHAREDFSARDDVNWMKHTLAYHDDETTKTHIAYRPVHYHTLDEDECKTVAPVARVY 628          
BLAST of EWM29068.1 vs. NCBI_GenBank
Match: gi|219113829|ref|XP_002186498.1| (succinate dehydrogenase flavoprotein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583348|gb|ACI65968.1| succinate dehydrogenase flavoprotein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 968.378 bits (2502), Expect = 0.000e+0
Identity = 454/577 (78.68%), Postives = 505/577 (87.52%), Query Frame = 0
Query:    1 MGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
            MG +EAGFKTACVTKLFPTRSHTVAAQGGINAALGNM EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV ELE +G+PFSRTE+GKIYQRAFGGQSL +GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+TTYFIEYFA+DL+M+  G CVG+ ALNMEDGT+HRIHA NTVLATGGYGR YFSCTSAHTCTGDGNAM +R GL  +D EFVQFHPTGIYGAGCLITEGCRGEGGILRN+EGERFMERYAP+AKDLASRDVVSR+MTMEIREGRG G +KDH++LHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH+GEVI  K   DG+   D V+PGLFA+GE+ACASVHGANRLGANSLLDIVVFGRA A RIA+IAKPGDK+   P+D G  S+ +LDK+R+A G   TA IR +MQ  MQEHAAVYRT  +LAEGK  ID V+  ++D+ VTD+SL+WNTDL+E+LELRNLL+ A+TTMY AE RKESRGAHA ED+  RDD NWM HT++ FD  T +T I YRP+H +TLDE+E K VPP  RVY
Sbjct:   62 MGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYFIEYFAMDLLMNDQGECVGVVALNMEDGTIHRIHAKNTVLATGGYGRTYFSCTSAHTCTGDGNAMAMRQGLSNQDNEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRSMTMEIREGRGAGPKKDHIYLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVIRTKFDKDGNFSKDEVVPGLFASGESACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDKIADGPSDVGFGSIAELDKLRYAEGHATTADIRSEMQSVMQEHAAVYRTTQTLAEGKTAIDGVVDKFKDIAVTDKSLVWNTDLVETLELRNLLACASTTMYGAENRKESRGAHAHEDYPTRDDENWMKHTLSYFDESTGRTEIKYRPIHYYTLDEDECKTVPPVARVY 638          
BLAST of EWM29068.1 vs. NCBI_GenBank
Match: gi|673032278|ref|XP_008870100.1| (succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Aphanomyces invadans] >gi|574474100|gb|ETW01102.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Aphanomyces invadans])

HSP 1 Score: 965.681 bits (2495), Expect = 0.000e+0
Identity = 456/577 (79.03%), Postives = 512/577 (88.73%), Query Frame = 0
Query:    4 AEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSLD---PDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
            AEAGFKTAC+TKLFPTRSHTVAAQGGINAAL NMTEDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV ELE+YGLPFSRT++GKIYQRAFGGQSL+YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T YFIEYFALDLIM+  G C G+ ALNMEDGT+HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M LRAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVGKEKDH++LHLDHLPP+LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH+GEV+ P       ++   PD VI GLFAAGEAA ASVHGANRLGANSLLDIVVFGRA ALRIA+I+KPG+   P+P +AG++S+  +D +R+A+G+  TA +R +MQKTMQ  AAVYRTQ++LAEG  KID +   ++D++VTDRSL+WNTDLIE++EL+NLL+ A+ TM+ AEARKESRGAHAREDFS RDD NWM HT+A  D ++ KT I+YRPVH HTLDE+E K V P  RVY
Sbjct:   52 AEAGFKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEAYGLPFSRTDEGKIYQRAFGGQSLQYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTEYFIEYFALDLIMNDQGECCGVIALNMEDGTIHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKEKDHIYLHLDHLPPELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVMPDTSGLPDVNKTYPDKVIKGLFAAGEAASASVHGANRLGANSLLDIVVFGRAAALRIAEISKPGEAKRPLPRNAGEQSLHMVDSIRYANGAIPTAELRLEMQKTMQSDAAVYRTQETLAEGVQKIDAITPKFKDIRVTDRSLIWNTDLIETIELKNLLACASATMHGAEARKESRGAHAREDFSARDDVNWMKHTLAYHDDESTKTHIAYRPVHYHTLDEDECKTVAPVARVY 628          
BLAST of EWM29068.1 vs. NCBI_GenBank
Match: gi|813192166|ref|XP_012207965.1| (succinate dehydrogenase flavoprotein subunit [Saprolegnia parasitica CBS 223.65] >gi|641526989|gb|KDO21309.1| succinate dehydrogenase flavoprotein subunit [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 962.985 bits (2488), Expect = 0.000e+0
Identity = 453/577 (78.51%), Postives = 508/577 (88.04%), Query Frame = 0
Query:    4 AEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKA---DGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
            AEAG KTAC+TKLFPTRSHTVAAQGGINAAL NMTEDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV ELE+YGLPFSRT+DGKIYQRAFGGQSL YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIM+  G C G+ A+NMEDG++HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M +RAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG EKDH++LHLDHLP +LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEV+ P          + PD V+ GLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIA+I+KPG+   PMPA+AG+ S+  +D +R+A+G+  TA +R +MQKTMQ  AAVYRTQ++LAEG  KID+++  ++D+KVTDRSL+WNTDLIE++EL+NLL+ A+ TM+ AEARKESRGAHAREDFS RDD NWM HT+A  + +   T I+YRPVH HTLDE E K V P  RVY
Sbjct:   56 AEAGLKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEAYGLPFSRTDDGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECCGVIAMNMEDGSIHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMAIRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGNEKDHIYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVVIPDTTGLPDANQMYPDKVVKGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGEAKRPMPANAGEASLSMVDSLRYANGAIPTADLRLEMQKTMQNDAAVYRTQETLAEGVQKIDKIVPKFKDIKVTDRSLIWNTDLIETIELKNLLACASATMHGAEARKESRGAHAREDFSTRDDVNWMKHTLAYHNTEEGTTHIAYRPVHYHTLDEEECKTVAPVARVY 632          
BLAST of EWM29068.1 vs. NCBI_GenBank
Match: gi|568029728|gb|ETM03646.1| (succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica])

HSP 1 Score: 962.6 bits (2487), Expect = 0.000e+0
Identity = 459/577 (79.55%), Postives = 504/577 (87.35%), Query Frame = 0
Query:    4 AEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKA---DGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
            AEAG KTAC++KLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP AV ELE +GLPFSRTE+GKIYQR FGGQSL++GKGGQA R ACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIM+  G CVG+ A NMEDGT HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M LRAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGK KDH+FLHLDHLPP+LL ERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGI TNH GEV+ P        G L PD ++PGLFAAGEAACASVHGANRLGANSLLD+VVFGRA ALRIA++ KPG+K  PMP D G +++ED+DK+R+A GS +TA +R +MQKTMQ  AAVYRTQ+SL  GK KIDEV+  + D+KVTDRSL+WNTDL E+LELRNLL+ A+ TM+ AEARKESRGAHAREDF+ERDD NWM HT+A  D D  KT I+YR V   TLDENE K VPPF RVY
Sbjct:   70 AEAGLKTACISKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPEAVRELEDFGLPFSRTEEGKIYQRPFGGQSLEFGKGGQARRTACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECVGVMAFNMEDGTFHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKNKDHIFLHLDHLPPELLHERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIATNHMGEVVVPDVDGLPEPGKLYPDKIVPGLFAAGEAACASVHGANRLGANSLLDLVVFGRACALRIAELTKPGEKKRPMPKDGGLKAIEDVDKLRYADGSISTAELRLEMQKTMQVDAAVYRTQESLEAGKEKIDEVVPKFNDIKVTDRSLIWNTDLTETLELRNLLACASCTMHGAEARKESRGAHAREDFTERDDVNWMKHTVAYHD-DEGKTHIAYRAVQDQTLDENECKHVPPFARVY 645          
BLAST of EWM29068.1 vs. NCBI_GenBank
Match: gi|675161755|ref|XP_008889762.1| (succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica INRA-310] >gi|566034620|gb|ETI57531.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica P1569] >gi|567972279|gb|ETK97267.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica] >gi|568000605|gb|ETL50618.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica] >gi|568060415|gb|ETM56947.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica] >gi|568108971|gb|ETN23578.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica INRA-310] >gi|570338328|gb|ETO86276.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica P1976] >gi|570962322|gb|ETP27301.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Phytophthora parasitica CJ01A1] >gi|970644831|gb|KUF85516.1| Succinate dehydrogenase flavoprotein subunit [Phytophthora nicotianae] >gi|970651460|gb|KUF90274.1| hypothetical protein AM588_10002730 [Phytophthora nicotianae])

HSP 1 Score: 962.6 bits (2487), Expect = 0.000e+0
Identity = 459/577 (79.55%), Postives = 504/577 (87.35%), Query Frame = 0
Query:    4 AEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKA---DGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
            AEAG KTAC++KLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP AV ELE +GLPFSRTE+GKIYQR FGGQSL++GKGGQA R ACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIM+  G CVG+ A NMEDGT HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M LRAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGK KDH+FLHLDHLPP+LL ERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGI TNH GEV+ P        G L PD ++PGLFAAGEAACASVHGANRLGANSLLD+VVFGRA ALRIA++ KPG+K  PMP D G +++ED+DK+R+A GS +TA +R +MQKTMQ  AAVYRTQ+SL  GK KIDEV+  + D+KVTDRSL+WNTDL E+LELRNLL+ A+ TM+ AEARKESRGAHAREDF+ERDD NWM HT+A  D D  KT I+YR V   TLDENE K VPPF RVY
Sbjct:   70 AEAGLKTACISKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPEAVRELEDFGLPFSRTEEGKIYQRPFGGQSLEFGKGGQARRTACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECVGVMAFNMEDGTFHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMALRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKNKDHIFLHLDHLPPELLHERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIATNHMGEVVVPDVDGLPEPGKLYPDKIVPGLFAAGEAACASVHGANRLGANSLLDLVVFGRACALRIAELTKPGEKKRPMPKDGGLKAIEDVDKLRYADGSISTAELRLEMQKTMQVDAAVYRTQESLEAGKEKIDEVVPKFNDIKVTDRSLIWNTDLTETLELRNLLACASCTMHGAEARKESRGAHAREDFTERDDVNWMKHTVAYHD-DEGKTHIAYRAVQDQTLDENECKHVPPFARVY 645          
BLAST of EWM29068.1 vs. NCBI_GenBank
Match: gi|1173958104|gb|OQS04518.1| (succinate dehydrogenase flavoprotein [Thraustotheca clavata])

HSP 1 Score: 961.444 bits (2484), Expect = 0.000e+0
Identity = 451/577 (78.16%), Postives = 511/577 (88.56%), Query Frame = 0
Query:    4 AEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKA---DGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 577
            AEAG KTAC+TKLFPTRSHTVAAQGGINAAL NMTEDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV ELE+YGLPFSRT++GKIYQRAFGGQSL +GKGGQAYRCACAADRTGHAMLHTLYGRSLAF+T+YFIEYFALDLIM+  G C G+ A+NMEDGT+HR H NNTVLATGGYGRAYFSCTSAHTCTGDG  M +RAG+P++DPEFVQFHPTGIYGAGCLITEG RGEGGILRN+EGERFMERYAP+AKDLASRDVVSRAMTMEIREGRGVG+EKDH++LHLDHLP +LLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNH+GEV+ P   A     ++ PD V+ GLFAAGEAA ASVHGANRLGANSLLDIVVFGRA ALRIA+I+KPG+   P+P++AG+ S+  +D +R+A+G   TA +R +MQKTMQ  AAVYRTQ++L EG  KID+++  ++D+KVTDRSL+WNTDLIE++EL+NLL+ AA+TM+ AEARKESRGAHAREDF+ RDD NWM HT+A  D +   T I+YRPVH HTLDENE K VPP  RVY
Sbjct:   56 AEAGLKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEAYGLPFSRTDEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTSYFIEYFALDLIMNDAGECCGVVAMNMEDGTIHRFHTNNTVLATGGYGRAYFSCTSAHTCTGDGTGMAIRAGIPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGREKDHIYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVVPDSSAAPDANNMYPDKVVKGLFAAGEAASASVHGANRLGANSLLDIVVFGRACALRIAEISKPGEAKRPLPSNAGEASLNMVDSLRYANGQIPTAELRLEMQKTMQNDAAVYRTQETLEEGVQKIDKIVPKFKDIKVTDRSLIWNTDLIETIELKNLLACAASTMHGAEARKESRGAHAREDFATRDDQNWMKHTLAYHDTEEGTTRITYRPVHYHTLDENECKTVPPVARVY 632          
The following BLAST results are available for this feature:
BLAST of EWM29068.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111586|gb|EWM29067.1|0.000e+0100.00succinate dehydrogenase flavoprotein subunit [Nann... [more]
gi|585111587|gb|EWM29068.1|0.000e+0100.00succinate dehydrogenase flavoprotein subunit [Nann... [more]
gi|676390327|ref|XP_009038442.1|0.000e+081.36hypothetical protein AURANDRAFT_37947 [Aureococcus... [more]
gi|698779553|ref|XP_009822820.1|0.000e+079.38succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
gi|219113829|ref|XP_002186498.1|0.000e+078.68succinate dehydrogenase flavoprotein [Phaeodactylu... [more]
gi|673032278|ref|XP_008870100.1|0.000e+079.03succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
gi|813192166|ref|XP_012207965.1|0.000e+078.51succinate dehydrogenase flavoprotein subunit [Sapr... [more]
gi|568029728|gb|ETM03646.1|0.000e+079.55succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
gi|675161755|ref|XP_008889762.1|0.000e+079.55succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
gi|1173958104|gb|OQS04518.1|0.000e+078.16succinate dehydrogenase flavoprotein [Thraustothec... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1599rna1599Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications