EWM29103.1, cds1577 (CDS) Nannochloropsis gaditana

Overview
NameEWM29103.1
Unique Namecds1577
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:986308..986522 +
Alignment locationCM002457.1:986615..986721 +
Alignment locationCM002457.1:986873..986962 +
Alignment locationCM002457.1:987112..987119 +
Alignment locationCM002457.1:987208..987373 +
Alignment locationCM002457.1:987640..987690 +
Alignment locationCM002457.1:987815..987852 +
Alignment locationCM002457.1:987897..987968 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29103.1
Productglutathione peroxidase
Orig transcript idgnl|cribi|Naga_100024g56.4361.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:986308..986522 +
CM002457.1supercontigCM002457.1:986615..986721 +
CM002457.1supercontigCM002457.1:986873..986962 +
CM002457.1supercontigCM002457.1:987112..987119 +
CM002457.1supercontigCM002457.1:987208..987373 +
CM002457.1supercontigCM002457.1:987640..987690 +
CM002457.1supercontigCM002457.1:987815..987852 +
CM002457.1supercontigCM002457.1:987897..987968 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0042221response to chemical
GO:0008152metabolic process
GO:0055114oxidation-reduction process
GO:0006979response to oxidative stress
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004602glutathione peroxidase activity
Vocabulary: INTERPRO
TermDefinition
IPR029760GPX_CS
IPR012336Thioredoxin-like_fold
IPR000889Glutathione_peroxidase
Homology
BLAST of EWM29103.1 vs. NCBI_GenBank
Match: gi|585111622|gb|EWM29103.1| (glutathione peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 513.457 bits (1321), Expect = 0.000e+0
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query:    1 MSFDTCKQMHFSGRCIAALATSSLALSNSISLARSRSSPAFVSTRAVSLLATQLSASSSSHSRHLSTKMSAASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFTPQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLIKDGKPIKRYGPQEKPESIEKDVPQGLRLCPLNGVGEGGGITQMDG 248
            MSFDTCKQMHFSGRCIAALATSSLALSNSISLARSRSSPAFVSTRAVSLLATQLSASSSSHSRHLSTKMSAASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFTPQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLIKDGKPIKRYGPQEKPESIEKDVPQGLRLCPLNGVGEGGGITQMDG
Sbjct:    1 MSFDTCKQMHFSGRCIAALATSSLALSNSISLARSRSSPAFVSTRAVSLLATQLSASSSSHSRHLSTKMSAASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFTPQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLIKDGKPIKRYGPQEKPESIEKDVPQGLRLCPLNGVGEGGGITQMDG 248          
BLAST of EWM29103.1 vs. NCBI_GenBank
Match: gi|37930463|gb|AAP69867.1| (glutathione peroxidase 1 [Lotus japonicus])

HSP 1 Score: 187.578 bits (475), Expect = 8.252e-56
Identity = 109/235 (46.38%), Postives = 147/235 (62.55%), Query Frame = 0
Query:    6 CKQMHFSGRCI---AALATSSL---ALSNS-ISLARSRSSPAFVSTR--AVSLLATQLSASSSSHSRHLSTKMSAASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFT-PQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLI-KDGKPIKRYGPQEKPESIEKDVPQGL 229
            C ++ F  R I   A L++SSL     SNS I+L+RS  S    +T     SL++T  S +  S +      M+A +S+YDFTVKDA G D NLG+ K K  +L+VNVASQCG T   Y  L +L +KY  KG  +L FPCNQFG QEP    Q+ +F   RFKA FP+ DKVDVNG++AAP++ +LK  + G   + +KWNFSK+L+ K+G  ++RY P   P SIEKD+ + L
Sbjct:    3 CTRILFFSRTIRFAAPLSSSSLHSFVFSNSPITLSRSYHSSLLTTTSFPIKSLVST--STTPFSFTLRPDHTMAAPTSVYDFTVKDARGNDVNLGDYKGK-VLLIVNVASQCGLTNSNYTELSQLYEKYKSKGLEILGFPCNQFGAQEPGDNEQIQEFVCTRFKAEFPVFDKVDVNGDSAAPLYKYLKSSKGGLFGDKIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDLVKLL 234          
BLAST of EWM29103.1 vs. NCBI_GenBank
Match: gi|242073970|ref|XP_002446921.1| (probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Sorghum bicolor] >gi|48374968|gb|AAT42166.1| putative glutathione peroxidase [Sorghum bicolor] >gi|241938104|gb|EES11249.1| hypothetical protein SORBI_3006G173900 [Sorghum bicolor] >gi|530278482|gb|AGT16461.1| phospholipid-hydroperoxide glutathione peroxidase [Saccharum hybrid cultivar R570] >gi|1068954338|gb|AOR16598.1| glutathione peroxidase [Saccharum arundinaceum] >gi|1070930327|gb|OEL20212.1| putative phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Dichanthelium oligosanthes])

HSP 1 Score: 184.882 bits (468), Expect = 1.446e-55
Identity = 89/162 (54.94%), Postives = 118/162 (72.84%), Query Frame = 0
Query:   70 SAASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFT-PQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLI-KDGKPIKRYGPQEKPESIEKDVPQGL 229
            S+A+S++DFTVKDA+G+D +L   K K  +L+VNVASQCG T   Y  L +L +KY  +GF +LAFPCNQFGGQEP    ++ QFA  RFKA +PI DKVDVNGNNAAP++ FLK  + G   +++KWNFSK+L+ K+G+ + RY P   P SIEKD+ + L
Sbjct:    5 SSATSVHDFTVKDASGKDVDLSTYKGK-VLLIVNVASQCGLTNSNYTELAQLYEKYKDQGFEILAFPCNQFGGQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPIYKFLKSSKGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLL 165          
BLAST of EWM29103.1 vs. NCBI_GenBank
Match: gi|159470005|ref|XP_001693150.1| (glutathione peroxidase [Chlamydomonas reinhardtii] >gi|158277408|gb|EDP03176.1| glutathione peroxidase [Chlamydomonas reinhardtii])

HSP 1 Score: 184.882 bits (468), Expect = 3.235e-55
Identity = 91/158 (57.59%), Postives = 113/158 (71.52%), Query Frame = 0
Query:   73 SSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFTPQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLI-KDGKPIKRYGPQEKPESIEKDVPQGL 229
            S  Y F VKD +G++F L  LKDK AVLVVN+AS CGFTPQY  LQ+LQDKYG +GF VL FPCNQFG QEP +   + QFAK  +  TFP+M KVDVNG  A P+F++LK Q+ G LT+ +KWNFSK+LI K+G  + RYG    P S+E D+ + L
Sbjct:   44 SEFYQFQVKDIDGKNFKLSSLKDK-AVLVVNLASACGFTPQYAELQDLQDKYGKQGFVVLGFPCNQFGAQEPGSNQTIKQFAKSNYGVTFPLMSKVDVNGPGAEPLFDWLKTQKGGLLTSDIKWNFSKFLINKEGDVVGRYGSTSSPLSLENDIKKAL 200          
BLAST of EWM29103.1 vs. NCBI_GenBank
Match: gi|703130084|ref|XP_010104520.1| (Phospholipid hydroperoxide glutathione peroxidase 1 [Morus notabilis] >gi|587913304|gb|EXC01121.1| Phospholipid hydroperoxide glutathione peroxidase 1 [Morus notabilis])

HSP 1 Score: 186.037 bits (471), Expect = 4.246e-55
Identity = 93/168 (55.36%), Postives = 117/168 (69.64%), Query Frame = 0
Query:   60 SHSRHLSTKMSAASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFTP-QYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLI-KDGKPIKRYGPQEKPESIEKDV 225
            S S  +  + +   SLYDFTVKD +G+D +LG+ K K  +L+VNVAS+CG TP  Y  L  L +KY  +GF +LAFPCNQFGGQEP + P++ QFA  RFKA FPI DKVDVNG N APV+ FLK    GFL + VKWNF K+L+ K+GK ++RY P   P  IEKD+
Sbjct:   64 SRSPGIYARAATEKSLYDFTVKDIDGKDVSLGKFKGK-VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDVVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDL 230          
BLAST of EWM29103.1 vs. NCBI_GenBank
Match: gi|1072910352|ref|XP_018447003.1| (PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Raphanus sativus])

HSP 1 Score: 185.652 bits (470), Expect = 4.985e-55
Identity = 98/195 (50.26%), Postives = 121/195 (62.05%), Query Frame = 0
Query:   37 SSPAFVSTRAVSLLATQLSASSSSHSRHLSTKMSAASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFT-PQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLI-KDGKPIKRYGPQEKPESIEKDVPQGL 229
            + P F S R V L  T    S S HS   S   S   S+YDFTVKDA G D +L   K K  +L+VNVASQCG T   Y  L +L  KY   GF +LAFPCNQFG QEP +  ++ QFA  RFKA +PI DKVDVNG+ AAP++ FLK  + G   + +KWNF+K+L+ KDG  + RY P   P SIEKD+ + L
Sbjct:   43 AKPLFTSHRQVPLSTTGAKLSKSEHSMATS---SEPKSIYDFTVKDAKGNDVDLSTYKGK-VLLIVNVASQCGLTNSNYTELAQLYQKYKDHGFEILAFPCNQFGNQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGDTAAPIYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRYAPTTSPLSIEKDLKKLL 233          
BLAST of EWM29103.1 vs. NCBI_GenBank
Match: gi|290995873|ref|XP_002680507.1| (predicted protein [Naegleria gruberi] >gi|284094128|gb|EFC47763.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 182.956 bits (463), Expect = 5.536e-55
Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 0
Query:   69 MSAASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFTPQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLI-KDGKPIKRYGPQEKPESIEKDVPQGLR 230
            MS  S  Y FTVKDA+  D ++ + K K  V++VNVAS+CGFT QY  +QE+ +KY  +GF VLAFPCNQFG QEP    ++C FA+ +FK TF I DK++VNG+   P++NFLK++  GFL +AVKWNF+K+L+ K GK +KRY P   P+ +E D+ + L+
Sbjct:    1 MSTDSDFYSFTVKDADLNDVSMADYKGK-VVMIVNVASRCGFTKQYDEIQEVYNKYKDQGFEVLAFPCNQFGSQEPGTNEEICTFARTKFKVTFKIFDKINVNGSETIPLYNFLKKEGAGFLVDAVKWNFTKFLVSKSGKVLKRYAPNTSPKDMEDDIQKLLK 162          
BLAST of EWM29103.1 vs. NCBI_GenBank
Match: gi|1002263182|ref|XP_015635940.1| (PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Oryza sativa Japonica Group] >gi|21360380|gb|AAM47493.1| glutathione peroxidase 1 [Oryza sativa] >gi|113565095|dbj|BAF15438.1| Os04g0556300 [Oryza sativa Japonica Group] >gi|215693018|dbj|BAG88438.1| unnamed protein product [Oryza sativa Japonica Group] >gi|222629338|gb|EEE61470.1| hypothetical protein OsJ_15735 [Oryza sativa Japonica Group] >gi|937915513|dbj|BAS90432.1| Os04g0556300 [Oryza sativa Japonica Group])

HSP 1 Score: 183.341 bits (464), Expect = 5.698e-55
Identity = 88/161 (54.66%), Postives = 118/161 (73.29%), Query Frame = 0
Query:   71 AASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFT-PQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLI-KDGKPIKRYGPQEKPESIEKDVPQGL 229
            +A+S++DFTVKDA+G+D NL   K K  +L+VNVASQCG T   Y  L +L +KY  +GF +LAFPCNQFGGQEP +  ++ QFA  RFKA +PI DKVDVNGNNAAP++ +LK  + G   +++KWNFSK+L+ K+G+ + RY P   P SIEKD+ + L
Sbjct:    6 SATSVHDFTVKDASGKDVNLSTYKGK-VLLIVNVASQCGLTNSNYTELSQLYEKYKVQGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNKGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLL 165          
BLAST of EWM29103.1 vs. NCBI_GenBank
Match: gi|659073789|ref|XP_008437254.1| (PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Cucumis melo])

HSP 1 Score: 184.496 bits (467), Expect = 1.775e-54
Identity = 98/189 (51.85%), Postives = 127/189 (67.20%), Query Frame = 0
Query:   44 TRAVSLLATQLSASSSSHSRHLSTKMS-AASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFT-PQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLI-KDGKPIKRYGPQEKPESIEKDVPQGL 229
            TR VS + ++ S  +S  +R   T  + + +S++DFTVKDA G D +L   K K  +L+VNVASQCG T   Y  L +L +KY   GF +LAFPCNQFGGQEP +  ++ QFA  RFKA +PI DKVDVNGNNAAP++ FLK  + G   +A+KWNFSK+L+ KDG  + RY P   P SIEKDV + L
Sbjct:   51 TRFVSPINSRSSLIASFLTRLDHTMATPSKTSVHDFTVKDAKGNDVDLSAYKGK-VLLIVNVASQCGLTNSNYTELSQLYEKYKGHGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKFLKSSKGGLFGDAIKWNFSKFLVDKDGNVVDRYAPTTSPLSIEKDVKKLL 238          
BLAST of EWM29103.1 vs. NCBI_GenBank
Match: gi|743852899|ref|XP_011029376.1| (PREDICTED: LOW QUALITY PROTEIN: probable phospholipid hydroperoxide glutathione peroxidase, partial [Populus euphratica])

HSP 1 Score: 184.111 bits (466), Expect = 1.964e-54
Identity = 103/220 (46.82%), Postives = 133/220 (60.45%), Query Frame = 0
Query:   18 ALATSSLALSNSISLARSRSSPAFVSTRAVSLLATQLSASSSS------HSRHLSTKMSAASSLYDFTVKDANGQDFNLGELKDKKAVLVVNVASQCGFT-PQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLI-KDGKPIKRYGPQEKPESIEKDVPQGL 229
            AL  +S  LS  +S    R+  + +    VSL++  L   +S          H     S+A S++DFTVKDA G D +L   K K  +L+VNVASQCG T   Y  L +L DKY  +G  +LAFPCNQFG QEP    Q+ +FA  RFKA +PI DKVDVNG NAAP++ FLK  + G   +++KWNFSK+L+ KDGK + RY P   P SIEKDV + L
Sbjct:   14 ALNVASFLLSKLLSFNSXRTLSSSLHNSPVSLISLSLXTENSRPLLGNLRFNHSVASQSSAQSVHDFTVKDARGNDVDLSIYKGK-VLLIVNVASQCGLTNSNYTELTQLYDKYKDQGLDILAFPCNQFGSQEPGNNEQIVEFACTRFKADYPIFDKVDVNGKNAAPIYKFLKSSKGGLFGDSIKWNFSKFLVDKDGKVVDRYAPTTSPLSIEKDVKKLL 232          
The following BLAST results are available for this feature:
BLAST of EWM29103.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111622|gb|EWM29103.1|0.000e+0100.00glutathione peroxidase [Nannochloropsis gaditana][more]
gi|37930463|gb|AAP69867.1|8.252e-5646.38glutathione peroxidase 1 [Lotus japonicus][more]
gi|242073970|ref|XP_002446921.1|1.446e-5554.94probable phospholipid hydroperoxide glutathione pe... [more]
gi|159470005|ref|XP_001693150.1|3.235e-5557.59glutathione peroxidase [Chlamydomonas reinhardtii]... [more]
gi|703130084|ref|XP_010104520.1|4.246e-5555.36Phospholipid hydroperoxide glutathione peroxidase ... [more]
gi|1072910352|ref|XP_018447003.1|4.985e-5550.26PREDICTED: probable phospholipid hydroperoxide glu... [more]
gi|290995873|ref|XP_002680507.1|5.536e-5551.53predicted protein [Naegleria gruberi] >gi|28409412... [more]
gi|1002263182|ref|XP_015635940.1|5.698e-5554.66PREDICTED: probable phospholipid hydroperoxide glu... [more]
gi|659073789|ref|XP_008437254.1|1.775e-5451.85PREDICTED: probable phospholipid hydroperoxide glu... [more]
gi|743852899|ref|XP_011029376.1|1.964e-5446.82PREDICTED: LOW QUALITY PROTEIN: probable phospholi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1581rna1581Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications