EWM29184.1, cds1561 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM29184.1 vs. NCBI_GenBank
Match: gi|553193617|ref|XP_005855806.1| (hypothetical protein NGA_0587700 [Nannochloropsis gaditana CCMP526] >gi|422293253|gb|EKU20553.1| hypothetical protein NGA_0587700 [Nannochloropsis gaditana CCMP526] >gi|585111704|gb|EWM29184.1| hypothetical protein Naga_100007g7 [Nannochloropsis gaditana]) HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0 Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query: 1 MTRTTRSRTSSNAAPFQRLGRKEASKGNVLCLSMIYAREDAVPEKDFGQVWRDRLRLVQLESNGWEVYSCDLSHDESLGVMGRHLQSNFDHRRFQEAFTRRFPHGLEIRQVIFDYFYIPEHWASQRWGSGRLVTDTIPFLRRTARVREFWLPNCKVMRELLEEHEEVLVSEGLDWSLVRERWKNVLYVATEQVDGIMQRSLAEVKTNANQVAAYLDDQYPFIKISPIVLAKPRRYRQEKGRDLKDNQKRSKVVEGGLKVRYQKGAERNILAPRNHGCIFEEDENPVSR 288
MTRTTRSRTSSNAAPFQRLGRKEASKGNVLCLSMIYAREDAVPEKDFGQVWRDRLRLVQLESNGWEVYSCDLSHDESLGVMGRHLQSNFDHRRFQEAFTRRFPHGLEIRQVIFDYFYIPEHWASQRWGSGRLVTDTIPFLRRTARVREFWLPNCKVMRELLEEHEEVLVSEGLDWSLVRERWKNVLYVATEQVDGIMQRSLAEVKTNANQVAAYLDDQYPFIKISPIVLAKPRRYRQEKGRDLKDNQKRSKVVEGGLKVRYQKGAERNILAPRNHGCIFEEDENPVSR
Sbjct: 1 MTRTTRSRTSSNAAPFQRLGRKEASKGNVLCLSMIYAREDAVPEKDFGQVWRDRLRLVQLESNGWEVYSCDLSHDESLGVMGRHLQSNFDHRRFQEAFTRRFPHGLEIRQVIFDYFYIPEHWASQRWGSGRLVTDTIPFLRRTARVREFWLPNCKVMRELLEEHEEVLVSEGLDWSLVRERWKNVLYVATEQVDGIMQRSLAEVKTNANQVAAYLDDQYPFIKISPIVLAKPRRYRQEKGRDLKDNQKRSKVVEGGLKVRYQKGAERNILAPRNHGCIFEEDENPVSR 288
BLAST of EWM29184.1 vs. NCBI_GenBank
Match: gi|294890781|ref|XP_002773311.1| (hypothetical protein Pmar_PMAR026561 [Perkinsus marinus ATCC 50983] >gi|239878363|gb|EER05127.1| hypothetical protein Pmar_PMAR026561 [Perkinsus marinus ATCC 50983]) HSP 1 Score: 62.3882 bits (150), Expect = 1.570e-7 Identity = 69/230 (30.00%), Postives = 108/230 (46.96%), Query Frame = 0
Query: 16 FQRLGRKEASKGNVLCLSMIYAREDAVPEKDFGQVWRDRLRLVQLESN-GWEVYSCDLSHDESLGVMG----RHLQSNF-DHRRFQEAFTRRFPHGLEIRQ----VIFDYFYIPEHWASQRWGSGRLVTDTIPFLRRTARVREFWLPNCK--VMRELLEEHEEVLVSEGL----DWSLVRERWKNVLYVATEQVD--GIMQRSLAEVKTNANQVAAYLDDQYPFIKISPI 227
RL + S VL L M+YA E + GQ RD R+V LE V++ D +H E +G + RH+QSNF D RR +F + + G E RQ V DYF P W+ W S T+P L E W+P+ ++ + + SE L + +++++ N L+ AT ++ G + S++ TN + +LD+ PFI+++PI
Sbjct: 86 LDRLPPLDLSGQCVLLLGMVYANEKR--RECEGQGMRDTKRIVALEKEFDCRVFTVDKTHPERVGYVTDNVLRHIQSNFNDPRRMLSSFQQAW--GKEGRQQFRLVALDYFRSPAGWSETNW-SKAFFDHTLPAL-----CTEGWMPDDGRLILPNTTCTMDGIRASEDLQACFNVAVLQDPDDNPLWAATRTLEAHGTLY-SMSGHYTNDTE-RRHLDELAPFIQLTPI 303 The following BLAST results are available for this feature:
BLAST of EWM29184.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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