EWM29184.1, cds1561 (CDS) Nannochloropsis gaditana

Overview
NameEWM29184.1
Unique Namecds1561
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:947935..948051 +
Alignment locationCM002457.1:948165..948377 +
Alignment locationCM002457.1:948484..948783 +
Alignment locationCM002457.1:948916..949152 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29184.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g7.6511.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:947935..948051 +
CM002457.1supercontigCM002457.1:948165..948377 +
CM002457.1supercontigCM002457.1:948484..948783 +
CM002457.1supercontigCM002457.1:948916..949152 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29184.1 vs. NCBI_GenBank
Match: gi|553193617|ref|XP_005855806.1| (hypothetical protein NGA_0587700 [Nannochloropsis gaditana CCMP526] >gi|422293253|gb|EKU20553.1| hypothetical protein NGA_0587700 [Nannochloropsis gaditana CCMP526] >gi|585111704|gb|EWM29184.1| hypothetical protein Naga_100007g7 [Nannochloropsis gaditana])

HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query:    1 MTRTTRSRTSSNAAPFQRLGRKEASKGNVLCLSMIYAREDAVPEKDFGQVWRDRLRLVQLESNGWEVYSCDLSHDESLGVMGRHLQSNFDHRRFQEAFTRRFPHGLEIRQVIFDYFYIPEHWASQRWGSGRLVTDTIPFLRRTARVREFWLPNCKVMRELLEEHEEVLVSEGLDWSLVRERWKNVLYVATEQVDGIMQRSLAEVKTNANQVAAYLDDQYPFIKISPIVLAKPRRYRQEKGRDLKDNQKRSKVVEGGLKVRYQKGAERNILAPRNHGCIFEEDENPVSR 288
            MTRTTRSRTSSNAAPFQRLGRKEASKGNVLCLSMIYAREDAVPEKDFGQVWRDRLRLVQLESNGWEVYSCDLSHDESLGVMGRHLQSNFDHRRFQEAFTRRFPHGLEIRQVIFDYFYIPEHWASQRWGSGRLVTDTIPFLRRTARVREFWLPNCKVMRELLEEHEEVLVSEGLDWSLVRERWKNVLYVATEQVDGIMQRSLAEVKTNANQVAAYLDDQYPFIKISPIVLAKPRRYRQEKGRDLKDNQKRSKVVEGGLKVRYQKGAERNILAPRNHGCIFEEDENPVSR
Sbjct:    1 MTRTTRSRTSSNAAPFQRLGRKEASKGNVLCLSMIYAREDAVPEKDFGQVWRDRLRLVQLESNGWEVYSCDLSHDESLGVMGRHLQSNFDHRRFQEAFTRRFPHGLEIRQVIFDYFYIPEHWASQRWGSGRLVTDTIPFLRRTARVREFWLPNCKVMRELLEEHEEVLVSEGLDWSLVRERWKNVLYVATEQVDGIMQRSLAEVKTNANQVAAYLDDQYPFIKISPIVLAKPRRYRQEKGRDLKDNQKRSKVVEGGLKVRYQKGAERNILAPRNHGCIFEEDENPVSR 288          
BLAST of EWM29184.1 vs. NCBI_GenBank
Match: gi|294890781|ref|XP_002773311.1| (hypothetical protein Pmar_PMAR026561 [Perkinsus marinus ATCC 50983] >gi|239878363|gb|EER05127.1| hypothetical protein Pmar_PMAR026561 [Perkinsus marinus ATCC 50983])

HSP 1 Score: 62.3882 bits (150), Expect = 1.570e-7
Identity = 69/230 (30.00%), Postives = 108/230 (46.96%), Query Frame = 0
Query:   16 FQRLGRKEASKGNVLCLSMIYAREDAVPEKDFGQVWRDRLRLVQLESN-GWEVYSCDLSHDESLGVMG----RHLQSNF-DHRRFQEAFTRRFPHGLEIRQ----VIFDYFYIPEHWASQRWGSGRLVTDTIPFLRRTARVREFWLPNCK--VMRELLEEHEEVLVSEGL----DWSLVRERWKNVLYVATEQVD--GIMQRSLAEVKTNANQVAAYLDDQYPFIKISPI 227
              RL   + S   VL L M+YA E     +  GQ  RD  R+V LE      V++ D +H E +G +     RH+QSNF D RR   +F + +  G E RQ    V  DYF  P  W+   W S      T+P L       E W+P+    ++       + +  SE L    + +++++   N L+ AT  ++  G +  S++   TN  +   +LD+  PFI+++PI
Sbjct:   86 LDRLPPLDLSGQCVLLLGMVYANEKR--RECEGQGMRDTKRIVALEKEFDCRVFTVDKTHPERVGYVTDNVLRHIQSNFNDPRRMLSSFQQAW--GKEGRQQFRLVALDYFRSPAGWSETNW-SKAFFDHTLPAL-----CTEGWMPDDGRLILPNTTCTMDGIRASEDLQACFNVAVLQDPDDNPLWAATRTLEAHGTLY-SMSGHYTNDTE-RRHLDELAPFIQLTPI 303          
The following BLAST results are available for this feature:
BLAST of EWM29184.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|553193617|ref|XP_005855806.1|0.000e+0100.00hypothetical protein NGA_0587700 [Nannochloropsis ... [more]
gi|294890781|ref|XP_002773311.1|1.570e-730.00hypothetical protein Pmar_PMAR026561 [Perkinsus ma... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1565rna1565Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications