EWM29198.1, cds1559 (CDS) Nannochloropsis gaditana

Overview
NameEWM29198.1
Unique Namecds1559
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:941766..944615 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29198.1
Productribosome biogenesis gtpase
Orig transcript idgnl|cribi|Naga_100007g10.6525.mrna
GeneLrc5
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:941766..944615 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR006073GTP_binding_domain
IPR027417P-loop_NTPase
Homology
BLAST of EWM29198.1 vs. NCBI_GenBank
Match: gi|585111718|gb|EWM29198.1| (ribosome biogenesis gtpase [Nannochloropsis gaditana])

HSP 1 Score: 1919.05 bits (4970), Expect = 0.000e+0
Identity = 949/949 (100.00%), Postives = 949/949 (100.00%), Query Frame = 0
Query:    1 MAPHLSGLNFHSLVKRSSAAALLFSLFIMKLPCVGAFQGVVRVWSSAVAPSRAAVLTSFMSPKRHVLKRMPISALCRRSTIMASRKAGAGQGEHEAEGEGISPESISSTGSNAGGKGIGRGPRNRRKIAVSAEEEEFSALSDSRTSVSEEKDSIRRPRVISRPPSRPVKRTMTINPNWRAHGGPENSIKGPEEAASSSSGTAGSGKARVGKNGPRGASPLGAEVPRYVEDEDEDGITFPKDMVIRGLDSQSYEEARRQAVLSDDEGEEEEWADEGVMVEEEEGEDFDEEEEEEDFDEEEEEEDFDEGDEEEEDGAHLPPVRPVSMEERLRLAESGNIFNPYVARMHTRAGTGEGPSGEAEDPGPMDGGGLRFLEEDVSPGEKREEARRAQAPSLPVKFQYKVVVGAGTCPGCGNAFQTKNESSPGFLPPDVYERLQAQMTALRPGAPRKPRPDAPPLSKSAAGALRKKTETRGEEGDLFQGLSAEEEVEMLLSGKSREEFEIERAAGRGREAQGGEVDLDLDEEGKEEKEGEGREGEEGGEGEEEEEEFRAVICQRCHKLKHYGDVEDALRPGWSANELLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTRDIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGDAQRKKKKKQGEQSKGGSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFTQERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQKGSSR 949
            MAPHLSGLNFHSLVKRSSAAALLFSLFIMKLPCVGAFQGVVRVWSSAVAPSRAAVLTSFMSPKRHVLKRMPISALCRRSTIMASRKAGAGQGEHEAEGEGISPESISSTGSNAGGKGIGRGPRNRRKIAVSAEEEEFSALSDSRTSVSEEKDSIRRPRVISRPPSRPVKRTMTINPNWRAHGGPENSIKGPEEAASSSSGTAGSGKARVGKNGPRGASPLGAEVPRYVEDEDEDGITFPKDMVIRGLDSQSYEEARRQAVLSDDEGEEEEWADEGVMVEEEEGEDFDEEEEEEDFDEEEEEEDFDEGDEEEEDGAHLPPVRPVSMEERLRLAESGNIFNPYVARMHTRAGTGEGPSGEAEDPGPMDGGGLRFLEEDVSPGEKREEARRAQAPSLPVKFQYKVVVGAGTCPGCGNAFQTKNESSPGFLPPDVYERLQAQMTALRPGAPRKPRPDAPPLSKSAAGALRKKTETRGEEGDLFQGLSAEEEVEMLLSGKSREEFEIERAAGRGREAQGGEVDLDLDEEGKEEKEGEGREGEEGGEGEEEEEEFRAVICQRCHKLKHYGDVEDALRPGWSANELLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTRDIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGDAQRKKKKKQGEQSKGGSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFTQERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQKGSSR
Sbjct:    1 MAPHLSGLNFHSLVKRSSAAALLFSLFIMKLPCVGAFQGVVRVWSSAVAPSRAAVLTSFMSPKRHVLKRMPISALCRRSTIMASRKAGAGQGEHEAEGEGISPESISSTGSNAGGKGIGRGPRNRRKIAVSAEEEEFSALSDSRTSVSEEKDSIRRPRVISRPPSRPVKRTMTINPNWRAHGGPENSIKGPEEAASSSSGTAGSGKARVGKNGPRGASPLGAEVPRYVEDEDEDGITFPKDMVIRGLDSQSYEEARRQAVLSDDEGEEEEWADEGVMVEEEEGEDFDEEEEEEDFDEEEEEEDFDEGDEEEEDGAHLPPVRPVSMEERLRLAESGNIFNPYVARMHTRAGTGEGPSGEAEDPGPMDGGGLRFLEEDVSPGEKREEARRAQAPSLPVKFQYKVVVGAGTCPGCGNAFQTKNESSPGFLPPDVYERLQAQMTALRPGAPRKPRPDAPPLSKSAAGALRKKTETRGEEGDLFQGLSAEEEVEMLLSGKSREEFEIERAAGRGREAQGGEVDLDLDEEGKEEKEGEGREGEEGGEGEEEEEEFRAVICQRCHKLKHYGDVEDALRPGWSANELLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTRDIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGDAQRKKKKKQGEQSKGGSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFTQERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQKGSSR 949          
BLAST of EWM29198.1 vs. NCBI_GenBank
Match: gi|1210516878|dbj|GAX24367.1| (hypothetical protein FisN_4Lh492 [Fistulifera solaris])

HSP 1 Score: 408.297 bits (1048), Expect = 6.465e-126
Identity = 246/704 (34.94%), Postives = 384/704 (54.55%), Query Frame = 0
Query:  259 AVLSDDEGEEEEWADEGVMVEEEEGE-DFDEE------EEEEDFDEEEEEEDFDEGDEEEEDGAHLPPVRPVSMEERLRLAESGNIFNPYVARMHTRAGTGEGPSGEAEDPGPMDGGGLRFLEEDVSPGEKREEARRA-QAPSLPVKFQYKVVVGAGTCPGCGNAFQTKNESSPGFLPPDVYERLQAQMTALRPGAPRKPRPDAPPLSKSAAGALRKKTETRGEEGDLFQGLSAEEEVEMLLSGKSREEFEIERAAGRGREAQGGEVDLDLDEEGKEEKEGEGREGEEGGEGEEEEEEFRAVICQRCHKLKHYGDVEDALRPGWSANELLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTR--DIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGDAQRKKKKKQGEQSKGGSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEG-RPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFTQ--ERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQKGSSR 949
            A  +DD+  E+++ADE  +V++ +G  ++DE        + ++ +  E    FD  D  ++  + L         E+L+     +  +  +A     A T E  +G+   P  +D    +   +DV       + + A Q  +L      K+V  A TC  CG  FQ+ +ES PG+LPP+ ++ LQ ++  L      + + D+                            + E+E+E L+    +E       +    +      ++DLD     EK+                     VIC+RCH L+++G VE+ LRPGW+   +++ E+F EL+  +R K   +V LVD+FDF GS+L  L  I G NPV++A NKADLLP      R   WV++ELE +G+  ++     + L+SCKTG  V  +L   +Q+A +   D+YVIG+AN GKST INR++   RS  +  RK++       +G   VTTS LPGTTL FI+VDLGD   LYDTPGL++P   T LL  +ELK V+P KR+  +T R++ GK VL+GGL R+++++  +PFLFTF+VSN++KLH T+ D+A +F+  H G +++PP     ER   +G +     EIEG+GWK +A DI I+GLGW++VTGA   KV++  P+++G+ +R PLMP++ W +TAK+TG +AV+   +  S +
Sbjct:   99 AFFADDDTFEDDFADEDFLVDDIDGSFEYDEHFPLTGRNDIQNLESGEVLGRFDLSDFTDDADSRL-----FERSEQLQGTSDDDSMDARIA-----AATSELRTGKVSVPKQLDDYAKQLSADDVGALRYSTDGQIAKQKENLS-----KLVTNAMTCSACGVDFQSTSESRPGYLPPEKFD-LQVKLGKLEEMQRLQEKADS-------------------------DSWTPEDEIEWLIQTSGKENLP---HSDNYIDINTMAEEMDLDFSKVSEKK---------------------VICKRCHGLQNFGKVEETLRPGWTKEPMISQEKFLELLRPLREKTAVIVALVDLFDFSGSVLPELDMIAGDNPVILAANKADLLPLKMGTLRAENWVRRELEYLGVKSLANIGGSVRLVSCKTGVGVDKMLDKARQLAEELGCDIYVIGSANAGKSTLINRILGGYRSHDEEPRKRRAGNANARRGQ--VTTSPLPGTTLRFIKVDLGDGRFLYDTPGLLVPGTFTQLLTADELKMVVPSKRVEPITFRIEPGKCVLIGGLARIELMDDCKPFLFTFFVSNDIKLHPTSVDKASDFVKKHAGGILTPPLAPGIERMEQIGDFEEHVVEIEGSGWKEAAADITITGLGWVAVTGAGPAKVKICVPKSIGISVRPPLMPFDMWESTAKYTGNKAVRKISKSSSGK 735          
BLAST of EWM29198.1 vs. NCBI_GenBank
Match: gi|1210515050|dbj|GAX26013.1| (hypothetical protein FisN_4Hh492 [Fistulifera solaris])

HSP 1 Score: 407.912 bits (1047), Expect = 8.240e-126
Identity = 258/762 (33.86%), Postives = 404/762 (53.02%), Query Frame = 0
Query:  203 GSGKARVGKNGPRGASPLG--AEVPRYVEDEDEDGITFPKDMVIR--GLDSQSYEEARRQAVLSDDEGEEEEWADEGVMVEEEEGEDFDEEEE-----EEDFDEEEEEEDFDEGDEEEEDGAHLPPVRPVSMEERLRLAESGNIFNPYVARMHTRAGTGEGPSGEAEDPGPMDGGGLRFLEEDV-SPGEKREEARRAQAPSLPVKFQYKVVVGAGTCPGCGNAFQTKNESSPGFLPPDVYERLQAQMTALRPGAPRKPRPDAPPLSKSAAGALRKKTETRGEEGDLFQGLSAEEEVEMLLSGKSREEFEIERAAGRGREAQGGEVDLDLDEEGKEEKEGEGREGEEGGEGEEEEEEFRAVICQRCHKLKHYGDVEDALRPGWSANELLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTR--DIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGDAQRKKKKKQGEQSKGGSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEG-RPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFT--QERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQKGSSR 949
             S  A  G   P+ + P G   +V   +E    D +    D + R  G DS         A  +DD+  E+E+ADE  + ++ + + F+  E+     E  F   E  E F   D    D       R +   E+++     +     +A     A T E  +G+   P  +D    +F  +DV + G   E     Q  +L      K+V  A TC  CG  FQ+ +E+ PG+LPP+ ++ L+ +++ L      + + D+                            + E+E+E L+    +E             +   +  +D++   +E +    +  E            + VIC+RCH L+++G V++ LRPGW+   +++ E+F EL+  +R K   +V LVD+FDF GS+L  L  I G NPV++A NKADLLP+     R   WV++ELE +G+  ++     + L+SCKTG  +  +L   +Q+A +R  D+YVIG+AN GKST IN ++   RS     RK++       +G   VTTS LPGTTL FI+VDLGD   LYDTPGL++P   T LL  +ELK V+P KR+  +T R++ GK VL+GGL R+++++  +PFLFTF+VSN++KLH T+ D+A +F+  H G +++PP T   ER   +G +     EIEG+GWK +A DI I+GLGW++VTGA   KV++  P+++G+ +R PLMP++ W +TAK+TG +AV+   +  S +
Sbjct:   46 ASADASEGPGQPKASRPKGKKIKVVEKIEQHHLDKLAQAFDELARKDGFDSSG-------AFFADDDTFEDEFADEDFLADDID-DSFEYNEQFPLTGENGFQNLESGEVFSRFDLS--DFTDDVDSRLIERSEQIQRTSDDDSMEARIA-----AATSELRTGKFSVPEQLDEYARQFSADDVGALGYVAEGQIAKQRENLT-----KLVTNAMTCSACGVDFQSTSENRPGYLPPEKFD-LRVKLSKLEEMQRLQEKADS-------------------------DSWTPEDEIEWLIQTSGKEN------------SPNSDNYIDINTMAEEMELDLSKLSE------------KKVICKRCHGLQNFGKVDETLRPGWTKEPMISQEKFLELLRPLREKTAVIVALVDLFDFSGSVLPELDMIAGDNPVILAANKADLLPSKMGTLRAENWVRRELEYLGVKSLANIGGSVRLVSCKTGVGIDKMLDKARQLAEERDCDIYVIGSANAGKSTLINHILGGYRSHDGEPRKRRAGNANARRGQ--VTTSPLPGTTLRFIKVDLGDGRFLYDTPGLLVPGTFTQLLTADELKMVVPSKRVEPITFRIEPGKCVLIGGLARIELMDDCKPFLFTFFVSNDIKLHPTSVDKASDFVKKHAGGILTPPLTPGVERMEQIGDFEEHVVEIEGSGWKEAAADITITGLGWVAVTGAGPAKVKICVPKSIGISVRPPLMPFDMWESTAKYTGNKAVRKTSKSSSGK 735          
BLAST of EWM29198.1 vs. NCBI_GenBank
Match: gi|299116827|emb|CBN74939.1| (Lrc5, mitochondrial YqeH-related GTPase [Ectocarpus siliculosus])

HSP 1 Score: 398.282 bits (1022), Expect = 3.395e-122
Identity = 193/402 (48.01%), Postives = 265/402 (65.92%), Query Frame = 0
Query:  550 RAVICQRCHKLKHYGDVEDALRPGWSANELLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTRDIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGDAQRKKKKKQGEQSKGGSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHL--GELISPPFTQERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQKGSSR 949
            + ++CQRC++L++YG VED LRPG+S ++LLTP+RF EL+  +R++RC ++ LVD+FDFHG+ LYNLP+I G+NPVLVA NK DLLP D  + RV  WV+ +  + G+ D+  RD+HL+SCK G  + PL+R   +   +  +   V G                                        VT S++PGTTLDF++VDLGDK +LYDTPGL+LPH +T+ LN EEL+A IP+K+++HVT R+ EGK VL+GGL R++++ GRPFL TF+VSN+V+LH T   R  + L  H+  G++I PPF  ER   +GP VP DF+I G GW+ SA D+VI+GLGW+SVTGA    +RV AP  V V  R PL+PYE+W TTAK+TG   VK  ++K   R
Sbjct:  374 KLLVCQRCYRLRNYGSVEDTLRPGFSDSDLLTPQRFLELLGSIRKQRCLIIYLVDLFDFHGTFLYNLPKITGNNPVLVAGNKVDLLPKDLKRQRVTKWVRDKCRESGLPDMEMRDVHLVSCKHGVGIPPLMRKGGKGGGRGGKAPAVAGRG--------------------------------------VTVSSVPGTTLDFLKVDLGDKRALYDTPGLLLPHTLTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVVTGRPFLLTFFVSNDVRLHPTDARRVDDMLSEHVGKGQMIFPPFDPERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRR 737          
BLAST of EWM29198.1 vs. NCBI_GenBank
Match: gi|397620424|gb|EJK65712.1| (hypothetical protein THAOC_13399 [Thalassiosira oceanica])

HSP 1 Score: 391.349 bits (1004), Expect = 3.726e-121
Identity = 218/573 (38.05%), Postives = 330/573 (57.59%), Query Frame = 0
Query:  383 REEARRAQAPSLPVKFQYKVVVGAGTCPGCGNAFQTKNESSPGFLPPDVYERLQAQMTALRPGAPRKPRPDAPPLSKSAAGALRKKTETRGEEGDLFQGLSAEEEVEMLLSGKSREEFEIERAAGRGREAQGGEVDLDLDEEGKEEKEGEGREGEEGGEGEEEEEEFRAVICQRCHKLKHYGDVEDALRPGWSANELLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTRD--IHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGDAQRKKKKKQGEQSKGGSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDML-EGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFT--QERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAV-KSDKQKGSSR 949
            R EA    +   P + +++++ G+ TCP CG+ FQ  +E  PG+LPPD +E  Q ++  +                         +   R +E D     S E+EV+ LL     E    + ++    +A   E+ LDL+E  K                       + VIC+RCH L+++G VE  LRPGW+    L+ E+FR+L+  ++ K   ++ LVD+FDF GS+L  L +I G NPV++A NKADLLP++    R   WV++ELE + +  ++     + L+SCKTG  +  L+   + +A ++  D+YV+GAAN GKS             G +++  K + G  +K    VTTS LPGTTL FI+VDL     LYDTPGL++P  +T  L  EELK V+P+KR+  VT R++ GK  L+GGL R++++ + +PFLFTF+V+NE+KLH T++ +A +F+ SH+G+L++PP    Q R   +G +   + E++G GWK +A DI + GLGW++VTGA   KVR+  P+ +GV LR PLMP++ W TTAK+TG R+V KS K +   R
Sbjct:   96 RREANPFGSDETPRRAKFQILTGSMTCPACGSDFQDTDEMKPGYLPPDKFET-QVKLKQI-------------------------EDIQRQQEKDDSDEWSPEDEVDWLLRQSGVEG--QDDSSSIDIDALADEMGLDLEELAK-----------------------KKVICKRCHGLQNFGTVEKNLRPGWTDEPTLSQEQFRKLLMPLQNKVAVIIALVDLFDFSGSVLPELDKIAGDNPVILAANKADLLPSEMGHVRAENWVRRELEYLDVNSIANIGGAVRLVSCKTGYGISALMEKAQSLAEEKECDIYVVGAANAGKSY-----------DGASKKNGKMRAGNANKWKGSVTTSPLPGTTLQFIKVDLSGGKVLYDTPGLLVPGCLTERLTPEELKIVVPKKRVEPVTFRIQAGKCALVGGLARVELIGDCKPFLFTFFVANEIKLHLTSSLKADDFISSHVGKLLTPPLEPGQARLEEIGEFEYHEIEVQGEGWKQAAADITLRGLGWVAVTGAGRAKVRIGVPKGIGVSLRPPLMPFDVWETTAKYTGGRSVRKSGKSRTGKR 606          
BLAST of EWM29198.1 vs. NCBI_GenBank
Match: gi|219127817|ref|XP_002184124.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404355|gb|EEC44302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 392.889 bits (1008), Expect = 1.402e-120
Identity = 219/572 (38.29%), Postives = 332/572 (58.04%), Query Frame = 0
Query:  383 REEARRAQAPSLPVKFQYKVVVGAGTCPGCGNAFQTKNESSPGFLPPDVYERLQAQMTALRPGAPRKPRPDAPPLSKSAAGALRK--KTETRGEEGDLFQGLSAEEEVEMLLS--GKSREEFEIERAAGRGREAQGGEVDLDLDEEGKEEKEGEGREGEEGGEGEEEEEEFRAVICQRCHKLKHYGDVEDALRPGWSANELLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTR--DIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLI---ELGRSGGDAQRKKKKKQGEQSKGGSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDML-EGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFT--QERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSD 942
            R EA        P K ++++V  + +C  CG+ FQ  NE  PG+LPP+ +                         +++A G + +  K + + E+ +     + E+E+E L+   GK     E++       ++  GE+ LDL E  K                       + VIC+RCH L+++G V+D+LRPGW+   LL+ E+FREL+  ++ K   +V LVD+FDF GS+L  L  I G NPV++A NKADLLP++  + R   WV++ELE +G+  ++     + L+SCKTG  +  LL   + +A +   D+YV+GAAN GKST +N ++   ++ RS G      K + G ++     VTTS LPGTTL FI+VDLG   SLYDTPGL++   +T LL  EELK V+P+K I  VTLRL  GK VL+GGL R++++ + RPF+FTF+V+NE+KLH T  +RA EF+  H G +++PP     +R   +G +     +I+G GWK +A DI ++GLGW++VTGA   +V++  P+ +GV +R PLMP++ W   +K+TG RAV  +
Sbjct:  189 RTEANPFGNDETPRKERFQLVTNSMSCSACGSDFQCHNEDRPGYLPPEKFA------------------------TQTALGKIEQMQKLQDKAEKAEW----TPEDEIEWLIQTQGKKDPNKEMQEVPQIDVDSLAGEMGLDLVELSK-----------------------KMVICKRCHGLQNFGKVQDSLRPGWTKEPLLSQEKFRELLRPIKEKPAVIVALVDLFDFSGSVLPELDEIAGENPVILAANKADLLPSEMGRVRAESWVRRELEYLGVKSLAGMRGAVRLVSCKTGAGINDLLEKARGLAEEIDGDIYVVGAANAGKSTLLNFVLGQDKVNRSPG------KARAGNRNAFKGAVTTSPLPGTTLKFIKVDLGGGRSLYDTPGLLVLGTVTQLLTPEELKIVVPKKPIEPVTLRLSTGKCVLVGGLARIELIGDSRPFMFTFFVANEIKLHPTDIERADEFVLKHAGGMLTPPLAPGPKRMEEIGEFEDHIVDIQGAGWKEAAADISLTGLGWVAVTGAGTAQVKISVPKGIGVSVRPPLMPFDIWKVASKYTGSRAVNYN 703          
BLAST of EWM29198.1 vs. NCBI_GenBank
Match: gi|546308055|ref|XP_005713542.1| (unnamed protein product [Chondrus crispus] >gi|507109937|emb|CDF33723.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 361.688 bits (927), Expect = 5.054e-111
Identity = 182/423 (43.03%), Postives = 261/423 (61.70%), Query Frame = 0
Query:  553 ICQRCHKLKHYGDVEDALR-------PGWSANEL-----------------LTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGS-NPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTRDIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGDAQRKKKKKQGEQSKGG-SLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFTQERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQKGSSR 949
            +CQRC++L HYG +E  LR       P    + L                 L+P +FR  +  +R     ++ LVDIFDFHG+ + ++  I+G  NP+++AVNK DLLP ++   RV  W+K E   +G+ DV+   IHL+S   G  V  L+    ++A+QRR D+YVIGAANVGKS+FINRL+ + +  G+  R K   +  + K     +TTS +PGTTLD I + LG KV+LYDTPGL++ HQ+T  L+ +EL+AV+P K + +VT RL EGK++ +GGL RL+++ G+PF FT + +  VK+H    D A EFL  H+G+ ++PPF++E    +G W  + F  EG  WK S VDIV+SGLGWISVTG    ++R+  P  VGV  R PLMP+ET    +K+TG  AV   + + SS+
Sbjct:   90 VCQRCYRLTHYGKIESHLRVKPKRTFPLPRTSSLSDKTDIEKESSGDGLSELSPRKFRRTLERLRNVNAVIIFLVDIFDFHGTFIPSVEDIIGQKNPIILAVNKVDLLPKNYKASRVEGWIKHECSVMGLHDVA--GIHLVSSTKGTGVGELVADALRIAKQRRSDVYVIGAANVGKSSFINRLMRIRKGKGNGSRSKDDGRPRRDKTSLGTITTSVVPGTTLDVIRIPLGGKVNLYDTPGLMISHQLTNFLDAKELRAVLPSKSVENVTFRLAEGKAIYIGGLARLEVVSGKPFFFTCFFAPTVKIHPGRADGAHEFLHRHVGDFLTPPFSEEGLEKLGEWTSKSFTAEGQSWKKSCVDIVLSGLGWISVTGPGKVRLRIWVPRGVGVFTREPLMPFETDVGVSKYTGSTAVNRKQMRKSSK 510          
BLAST of EWM29198.1 vs. NCBI_GenBank
Match: gi|545707817|ref|XP_005706222.1| (GTP-binding protein [Galdieria sulphuraria] >gi|452822685|gb|EME29702.1| GTP-binding protein [Galdieria sulphuraria])

HSP 1 Score: 337.035 bits (863), Expect = 2.386e-101
Identity = 172/413 (41.65%), Postives = 254/413 (61.50%), Query Frame = 0
Query:  553 ICQRCHKLKHYGDVEDALRPGWSANE-----LLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTRDIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELG---RSGGDAQRKKKKKQGEQS----------KGGSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFTQERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQKGS 947
            +CQRC+ + H   VED L+ G + +      L + + F + +  +  KRC +V +VDIFDF GS +  LP I G+NPV++ VNK DLLP D +  R+ +W+K + E  G+T +    IH +SC     +      + ++ +    D+YV+G  NVGKSTFINRL+      ++G +       KQG+ S          K    +TTS  PGTTL+ I +  G   S+YDTPG+I PHQIT LL +EE+K V+P+KR+  V+ RL EGK +  GGL RL+ML+G+PF FT ++SNEVK+H + T +A E L++H+G L+ PP +  +   +G +  ++FE++G GW  S+ DIVISGLGW++VTG    KVRV+AP+ VGV LR P+ P+E     +K+TG +A   +++  S
Sbjct:  137 VCQRCYYMVHRTLVEDQLKIGATEDSTNKDILHSLKLFEQRLENICSKRCIIVYMVDIFDFDGSFVSRLPFITGNNPVILIVNKIDLLPKDINIGRLYVWLKNQCEARGLTKI--HRIHFVSCTKDYRMGETKADIIRLVQYLNADVYVVGCTNVGKSTFINRLLSNTVEKKTGQELLNYLGLKQGQFSLTELKRAFKDKKDPQLTTSCFPGTTLNPIRIHFGRSHSMYDTPGIIQPHQITHLLTSEEIKMVLPKKRVRVVSFRLMEGKCIHFGGLARLEMLQGKPFFFTVFMSNEVKVHPSTTAKAEELLETHVGGLLQPPISWRKYKELGNFKAKEFEVDGVGWLQSSHDIVISGLGWVAVTGCGRLKVRVVAPKGVGVFLREPIAPFEVLKGVSKYTGYKAFAGNRETRS 547          
BLAST of EWM29198.1 vs. NCBI_GenBank
Match: gi|470522798|ref|XP_004354073.1| (ribosome biogenesis GTPase YqeH, putative [Acanthamoeba castellanii str. Neff] >gi|440803475|gb|ELR24376.1| ribosome biogenesis GTPase YqeH, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 288.5 bits (737), Expect = 7.247e-83
Identity = 161/398 (40.45%), Postives = 232/398 (58.29%), Query Frame = 0
Query:  544 EEEEEFRAVICQRCHKLKHYGDVEDALRPGWSANELLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTRDIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGDAQRKKKKKQGEQSKGGSLVTTSALPGTTLDFIEVDLGDKVS--------LYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGR-PFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFTQERRAAMGPWVPRDFEIEGT----GWKTSAVDIVISGLGWISV---TGALDCKVRVMAPEAVGVRLRSPLMPYE 925
            ++EE   A +CQRCH L+H+G V     P          E  +E + ++  + C VV +VDIFDF GS + +   I G+NPV++  NK DLLP     +R++IW+K+   ++G+ +V  R +HLIS K+G  V  L R ++Q+ ++R  D+YV+G  NVGKST INRLI +   G          QG + +  +L+TTS +PGTTL+ I   LG K +        LYDTPG+I  HQ+  LLN EEL   +P++RI  VT RL  GK++  GGL RLD ++G  P   T ++S E+K+H T+  +A + +  H G L+ PP  +ER   +  ++ +D  IE      G K S  DIV SGLGW S+   T   D  +R ++PE VG+ LR PLMP+E
Sbjct:   35 KQEERGLAPVCQRCHSLRHHGIVTPLKVPY---------EEVKEHLKLISDQSCLVVKIVDIFDFSGSFINDFRGITGNNPVVLVGNKLDLLPVGAKPERIQIWLKRLATEMGLKNV--RSVHLISAKSGEGVHSLSRKIEQLRKER--DVYVVGCTNVGKSTLINRLISINTKGTYNSLTVHIVQGPKKR--NLITTSIVPGTTLNLISFPLGGKKAFKMGKRAFLYDTPGVINKHQMANLLNMEELSITLPKRRIQPVTYRLVPGKALFFGGLGRLDYVDGPGPLYLTLFLSKELKVHPTSIAKADDVMSKHAGTLLVPPLGEERAKQLPEFIAKDIHIEADEERGGLKKSFADIVFSGLGWTSLVTPTFDRDIHLRSLSPEGVGIFLREPLMPFE 417          
BLAST of EWM29198.1 vs. NCBI_GenBank
Match: gi|1072227618|gb|OEU12357.1| (hypothetical protein FRACYDRAFT_172393 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 257.684 bits (657), Expect = 8.101e-75
Identity = 123/280 (43.93%), Postives = 190/280 (67.86%), Query Frame = 0
Query:  665 IHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGDAQRK--KKKKQGEQSKGGSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDML-EGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFT--QERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAV 939
            + L+SCKTG+ +  +L   K++A +   D+YV+GAAN GKST IN +  L R+  D + K   K + G +++    +TTS LPGTTL FI++DLGD  ++YDTPGL++P  IT LL  EEL+ V P+K++  +T R+  GK VL+GGL +++++ + +PFL TF+V+N++KLH T + RA EF+  H G +++PP     ER A +G +     E++G GWK +A DI ++GLGWI+VTGA   K+++  P+ +G+ +R PLMP++ W   A++TG +AV
Sbjct:   13 VRLVSCKTGDGISDMLDKAKELANEVNGDIYVVGAANAGKSTLINYI--LSRNSSDKKEKPTMKIRAGNRNQQKGELTTSPLPGTTLKFIKIDLGDGQNIYDTPGLLVPGTITQLLTPEELRVVCPKKKVEPITFRVASGKCVLIGGLAKIEVIGDSKPFLLTFFVANDIKLHPTDSSRADEFVRKHTGTILTPPLEPGPERMAEIGEFDTHTIELDGAGWKEAAADISLTGLGWIAVTGAGKVKLKISVPKGIGIAVRPPLMPFDIWEVAARYTGSKAV 290          
The following BLAST results are available for this feature:
BLAST of EWM29198.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111718|gb|EWM29198.1|0.000e+0100.00ribosome biogenesis gtpase [Nannochloropsis gadita... [more]
gi|1210516878|dbj|GAX24367.1|6.465e-12634.94hypothetical protein FisN_4Lh492 [Fistulifera sola... [more]
gi|1210515050|dbj|GAX26013.1|8.240e-12633.86hypothetical protein FisN_4Hh492 [Fistulifera sola... [more]
gi|299116827|emb|CBN74939.1|3.395e-12248.01Lrc5, mitochondrial YqeH-related GTPase [Ectocarpu... [more]
gi|397620424|gb|EJK65712.1|3.726e-12138.05hypothetical protein THAOC_13399 [Thalassiosira oc... [more]
gi|219127817|ref|XP_002184124.1|1.402e-12038.29predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|546308055|ref|XP_005713542.1|5.054e-11143.03unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|545707817|ref|XP_005706222.1|2.386e-10141.65GTP-binding protein [Galdieria sulphuraria] >gi|45... [more]
gi|470522798|ref|XP_004354073.1|7.247e-8340.45ribosome biogenesis GTPase YqeH, putative [Acantha... [more]
gi|1072227618|gb|OEU12357.1|8.101e-7543.93hypothetical protein FRACYDRAFT_172393 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1563rna1563Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications