EWM30539.1, cds153 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|585113203|gb|EWM30539.1| (atp-dependent rna helicase ythdc2-like protein [Nannochloropsis gaditana]) HSP 1 Score: 1976.44 bits (5119), Expect = 0.000e+0 Identity = 965/965 (100.00%), Postives = 965/965 (100.00%), Query Frame = 0 Query: 1 MSREYFAGGREDLRGKRHLSLRRHRDASTDWLGSYHRPHIPFEDRHHPHALPPTLSHALPAEGHGREPRRGGFPVSYSPPRMPRQHDPPPLLSLEECDGPSDHSFPSTAMPLEDLDEGRGWRRPRVPSGLHSHAIPPPPAHAFASPWPSRSFPPAQSHSRFGGLERGESSRQHEQWGVEDQLRRDWERDRWERGWDREGSRFFVNVPERVRRSEREAETSFNPFPEQTSKELGKSFSHHAKGGLVQTGAVGRGRIRQGEHGYLVTLSLPEKDLGKPTFSPSSSSSSLSSLRDSGGNTSLAPPAGDEVGGSLIQGEGDSVNGSLGRKRGRSDQNCGFSVKKAKGSGQIPAGKARDGISVSIKKDEQLELAVTIVRATFCAHISSLHGHCSADPAFLPCPFQSVGDLPPPTDPLGEVFGVKARSTLSECGFRAMLQGVGDALLRIIPRKGQAGEPVEIMVSKDLLIELRNYFYLKSSNAKKRKPTLKQEIIQRTAKAVCVGASALGKEKERGYAEMLLSIPWDVVAYCKKSILHRLTALVKRVSEEEESVPRGLLSSALQRLSRPSSALWYDSSQKILSLMEQLDRLQIPPVLPDSALVSCRAHTENHQIEQSPNLTAMALSKDTGTSVETDRRRMLKPMNDVFDKTSPTLACDDDDNACVIYSPERNLEEDTDELGSPVVSPPLSPSSRGIQQTAAIGRQGKRKDSYEKGPSAFSLAPVAACNTVSGFPAPTALPASSLASSVPRDPRKLAREKIAHRTTAVKKVDFLLPNEEDSGDHGKRTTYMRSHVLEAIRATSRQTSYSKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR 965 MSREYFAGGREDLRGKRHLSLRRHRDASTDWLGSYHRPHIPFEDRHHPHALPPTLSHALPAEGHGREPRRGGFPVSYSPPRMPRQHDPPPLLSLEECDGPSDHSFPSTAMPLEDLDEGRGWRRPRVPSGLHSHAIPPPPAHAFASPWPSRSFPPAQSHSRFGGLERGESSRQHEQWGVEDQLRRDWERDRWERGWDREGSRFFVNVPERVRRSEREAETSFNPFPEQTSKELGKSFSHHAKGGLVQTGAVGRGRIRQGEHGYLVTLSLPEKDLGKPTFSPSSSSSSLSSLRDSGGNTSLAPPAGDEVGGSLIQGEGDSVNGSLGRKRGRSDQNCGFSVKKAKGSGQIPAGKARDGISVSIKKDEQLELAVTIVRATFCAHISSLHGHCSADPAFLPCPFQSVGDLPPPTDPLGEVFGVKARSTLSECGFRAMLQGVGDALLRIIPRKGQAGEPVEIMVSKDLLIELRNYFYLKSSNAKKRKPTLKQEIIQRTAKAVCVGASALGKEKERGYAEMLLSIPWDVVAYCKKSILHRLTALVKRVSEEEESVPRGLLSSALQRLSRPSSALWYDSSQKILSLMEQLDRLQIPPVLPDSALVSCRAHTENHQIEQSPNLTAMALSKDTGTSVETDRRRMLKPMNDVFDKTSPTLACDDDDNACVIYSPERNLEEDTDELGSPVVSPPLSPSSRGIQQTAAIGRQGKRKDSYEKGPSAFSLAPVAACNTVSGFPAPTALPASSLASSVPRDPRKLAREKIAHRTTAVKKVDFLLPNEEDSGDHGKRTTYMRSHVLEAIRATSRQTSYSKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR Sbjct: 1 MSREYFAGGREDLRGKRHLSLRRHRDASTDWLGSYHRPHIPFEDRHHPHALPPTLSHALPAEGHGREPRRGGFPVSYSPPRMPRQHDPPPLLSLEECDGPSDHSFPSTAMPLEDLDEGRGWRRPRVPSGLHSHAIPPPPAHAFASPWPSRSFPPAQSHSRFGGLERGESSRQHEQWGVEDQLRRDWERDRWERGWDREGSRFFVNVPERVRRSEREAETSFNPFPEQTSKELGKSFSHHAKGGLVQTGAVGRGRIRQGEHGYLVTLSLPEKDLGKPTFSPSSSSSSLSSLRDSGGNTSLAPPAGDEVGGSLIQGEGDSVNGSLGRKRGRSDQNCGFSVKKAKGSGQIPAGKARDGISVSIKKDEQLELAVTIVRATFCAHISSLHGHCSADPAFLPCPFQSVGDLPPPTDPLGEVFGVKARSTLSECGFRAMLQGVGDALLRIIPRKGQAGEPVEIMVSKDLLIELRNYFYLKSSNAKKRKPTLKQEIIQRTAKAVCVGASALGKEKERGYAEMLLSIPWDVVAYCKKSILHRLTALVKRVSEEEESVPRGLLSSALQRLSRPSSALWYDSSQKILSLMEQLDRLQIPPVLPDSALVSCRAHTENHQIEQSPNLTAMALSKDTGTSVETDRRRMLKPMNDVFDKTSPTLACDDDDNACVIYSPERNLEEDTDELGSPVVSPPLSPSSRGIQQTAAIGRQGKRKDSYEKGPSAFSLAPVAACNTVSGFPAPTALPASSLASSVPRDPRKLAREKIAHRTTAVKKVDFLLPNEEDSGDHGKRTTYMRSHVLEAIRATSRQTSYSKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR 965
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|553191939|ref|XP_005855487.1| (yth domain containing 2 [Nannochloropsis gaditana CCMP526] >gi|553193903|ref|XP_005855857.1| yth domain containing 2 [Nannochloropsis gaditana CCMP526] >gi|422293206|gb|EKU20506.1| yth domain containing 2 [Nannochloropsis gaditana CCMP526] >gi|422293574|gb|EKU20874.1| yth domain containing 2 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 259.61 bits (662), Expect = 4.214e-78 Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0 Query: 841 LTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR 965 +TEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR Sbjct: 1 MTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR 125
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|635370407|emb|CCI41457.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 87.8113 bits (216), Expect = 1.559e-14 Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = 0 Query: 805 CQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIGHVNR-----------LSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943 CQ C+ +++ RC +CG C CS C A ++EI + L MD+AI+ AFK ++ F + +L+Q+ + VNF R + TALMA A HG+ V++LLSLGA+PCL +GH A FA++ +K LL Sbjct: 268 CQLCR-RMNAKRCMRCGYCTKCSQRELCPNAS----MSEISQPSENLSVKDRNQQVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRMESDHSTALMAGAHHGREDAVRKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALL 410
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|635370405|emb|CCI41455.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 87.8113 bits (216), Expect = 2.602e-14 Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = 0 Query: 805 CQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIG-----------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943 CQ C+ +++ RC +CG C CS C A ++EI + L MD+AI+ AFK ++ F + +L+Q+ + VNF R + TALMA A HG+ V++LLSLGA+PCL +GH A FA++ +K LL Sbjct: 319 CQLCR-RMNAKRCMRCGYCTKCSQRELCPNAS----MSEISQPSENLSVKDRNQQVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRMESDHSTALMAGAHHGREDAVRKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALL 461
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|635370406|emb|CCI41456.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 87.4261 bits (215), Expect = 2.808e-14 Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = 0 Query: 805 CQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIG-----------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943 CQ C+ +++ RC +CG C CS C A ++EI + L MD+AI+ AFK ++ F + +L+Q+ + VNF R + TALMA A HG+ V++LLSLGA+PCL +GH A FA++ +K LL Sbjct: 308 CQLCR-RMNAKRCMRCGYCTKCSQRELCPNAS----MSEISQPSENLSVKDRNQQVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRMESDHSTALMAGAHHGREDAVRKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALL 450
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|325188248|emb|CCA22787.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 86.2705 bits (212), Expect = 7.326e-14 Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 0 Query: 805 CQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERR-----SRLTEIGHVNR--LSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943 CQ C+ +++ RC +CG C CS C A S + N+ L MD+AI+ AFK ++ F + +L+Q+ + VNF R + TALMAAA HG+ ++LLSLGA+PCL +GH A FA++ +K LL Sbjct: 317 CQLCR-RMNAKRCMRCGYCTKCSQRELCPNANNSEISQPSENLSVKDRNQQVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRIESDHSTALMAAAHHGREDAAQKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALL 459
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|970650166|gb|KUF89262.1| (Monoterpene epsilon-lactone hydrolase [Phytophthora nicotianae]) HSP 1 Score: 76.6406 bits (187), Expect = 7.161e-11 Identity = 55/160 (34.38%), Postives = 80/160 (50.00%), Query Frame = 0 Query: 802 SKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAER--------RSRLTEIG---------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943 SK C HC+ C KCG+ + C I A+ ++ T +G +V L MD AI+ AF+ ++ F + +L+Q+ G+ VNF R + +ALMAAA HG+ +LLSLGA+PCL+ G+ A FA + H E E L Sbjct: 261 SKRCTHCE------YCAKCGQKDKCEPISVTPAAQSFSGDGNGTKTAGTSMGAKSLSVKDRNVQVLGSVMDAAIYHAFR--QEDFHSVFSLIQN-GMDVNFQRVESDHSSALMAAAHHGRDDAASKLLSLGANPCLEDHTGNKAWNFAERRGHTELMEKL 411
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|568034537|gb|ETM32206.1| (hypothetical protein L914_20350 [Phytophthora parasitica]) HSP 1 Score: 76.6406 bits (187), Expect = 9.764e-11 Identity = 55/160 (34.38%), Postives = 80/160 (50.00%), Query Frame = 0 Query: 802 SKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAE--------RRSRLTEIG---------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943 SK C HC+ C KCG+ + C I A+ ++ T +G +V L MD AI+ AF+ ++ F + +L+Q+ G+ VNF R + +ALMAAA HG+ +LLSLGA+PCL+ G+ A FA + H E E L Sbjct: 336 SKRCTHCE------YCAKCGQKDKCEPISVTPAAQSFSGDGNGTKTAGTSMGAKSLSVKDRNVQVLGSVMDAAIYHAFR--QEDFHSVFSLIQN-GMDVNFQRVESDHSSALMAAAHHGRDDAASKLLSLGANPCLEDHTGNKAWNFAERRGHTELMEKL 486
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|567975162|gb|ETL25729.1| (hypothetical protein L916_20468 [Phytophthora parasitica] >gi|970646545|gb|KUF86663.1| hypothetical protein AM587_10004311 [Phytophthora nicotianae]) HSP 1 Score: 76.6406 bits (187), Expect = 9.764e-11 Identity = 55/160 (34.38%), Postives = 80/160 (50.00%), Query Frame = 0 Query: 802 SKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAE--------RRSRLTEIG---------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943 SK C HC+ C KCG+ + C I A+ ++ T +G +V L MD AI+ AF+ ++ F + +L+Q+ G+ VNF R + +ALMAAA HG+ +LLSLGA+PCL+ G+ A FA + H E E L Sbjct: 336 SKRCTHCE------YCAKCGQKDKCEPISVTPAAQSFSGDGNGTKTAGTSMGAKSLSVKDRNVQVLGSVMDAAIYHAFR--QEDFHSVFSLIQN-GMDVNFQRVESDHSSALMAAAHHGRDDAASKLLSLGANPCLEDHTGNKAWNFAERRGHTELMEKL 486
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|570312679|gb|ETO60627.1| (hypothetical protein F444_21211 [Phytophthora parasitica P1976]) HSP 1 Score: 76.6406 bits (187), Expect = 1.011e-10 Identity = 55/160 (34.38%), Postives = 80/160 (50.00%), Query Frame = 0 Query: 802 SKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAE--------RRSRLTEIG---------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943 SK C HC+ C KCG+ + C I A+ ++ T +G +V L MD AI+ AF+ ++ F + +L+Q+ G+ VNF R + +ALMAAA HG+ +LLSLGA+PCL+ G+ A FA + H E E L Sbjct: 336 SKRCTHCE------YCAKCGQKDKCEPISVTPAAQSFSGDGNGTKTAGTSMGAKSLSVKDRNVQVLGSVMDAAIYHAFR--QEDFHSVFSLIQN-GMDVNFQRVESDHSSALMAAAHHGRDDAASKLLSLGANPCLEDHTGNKAWNFAERRGHTELMEKL 486 The following BLAST results are available for this feature:
BLAST of EWM30539.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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