EWM29152.1, cds1509 (CDS) Nannochloropsis gaditana

Overview
NameEWM29152.1
Unique Namecds1509
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:821354..821823 -
Alignment locationCM002457.1:820651..821259 -
Alignment locationCM002457.1:820442..820559 -
Alignment locationCM002457.1:820097..820357 -
Alignment locationCM002457.1:819944..819949 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29152.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g63.6479.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:821354..821823 -
CM002457.1supercontigCM002457.1:820651..821259 -
CM002457.1supercontigCM002457.1:820442..820559 -
CM002457.1supercontigCM002457.1:820097..820357 -
CM002457.1supercontigCM002457.1:819944..819949 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM29152.1 vs. NCBI_GenBank
Match: gi|585111672|gb|EWM29152.1| (hypothetical protein Naga_100007g63 [Nannochloropsis gaditana])

HSP 1 Score: 981.474 bits (2536), Expect = 0.000e+0
Identity = 487/487 (100.00%), Postives = 487/487 (100.00%), Query Frame = 0 
Query:    1 MGNLSSTTNTVRSTSPRRNAQKEVAIAGHGRVESNILPAQSASPPLPVTAAPAQALHLASPAIGVDSTNSTPCFSDLAPTIAVSVSTSPPSSTADSLIFSGRAATSSPLPLSPRSNLSDGSSVSSTEGRDNSFFWNLQEQYNKYKMARRQSLLESAGHLGRPCRLVLHSITVQGAFASTARIQAEVCVLREKPHQGLVPDAPPVRTPPRSPLRPGQANFGGESDIIILPSITTTSTLSITVLLQDVPIGTVYYPVAEVTATLRPTELRLMPGRTSPRSPSNFPLRRRKGSPTLRRTGDTEASECRGRLSPPHSVSFLSSPPTPQAIAAQGKDTNGGIQAAEGPPRLCTVWGDLTFYNNRSSAVGWVDVIEEAGQPVNEPRLLVVTPQSFGLLVTPQCVVGNLGFNMNQVRHVEPGGRSQRLPEREDETSLQNMSVNDKGGGSLTLSVSRPDGGEKDMILAVDSEQDARRWTQLLRRGSHDAAFGSGI 487
            MGNLSSTTNTVRSTSPRRNAQKEVAIAGHGRVESNILPAQSASPPLPVTAAPAQALHLASPAIGVDSTNSTPCFSDLAPTIAVSVSTSPPSSTADSLIFSGRAATSSPLPLSPRSNLSDGSSVSSTEGRDNSFFWNLQEQYNKYKMARRQSLLESAGHLGRPCRLVLHSITVQGAFASTARIQAEVCVLREKPHQGLVPDAPPVRTPPRSPLRPGQANFGGESDIIILPSITTTSTLSITVLLQDVPIGTVYYPVAEVTATLRPTELRLMPGRTSPRSPSNFPLRRRKGSPTLRRTGDTEASECRGRLSPPHSVSFLSSPPTPQAIAAQGKDTNGGIQAAEGPPRLCTVWGDLTFYNNRSSAVGWVDVIEEAGQPVNEPRLLVVTPQSFGLLVTPQCVVGNLGFNMNQVRHVEPGGRSQRLPEREDETSLQNMSVNDKGGGSLTLSVSRPDGGEKDMILAVDSEQDARRWTQLLRRGSHDAAFGSGI
Sbjct:    1 MGNLSSTTNTVRSTSPRRNAQKEVAIAGHGRVESNILPAQSASPPLPVTAAPAQALHLASPAIGVDSTNSTPCFSDLAPTIAVSVSTSPPSSTADSLIFSGRAATSSPLPLSPRSNLSDGSSVSSTEGRDNSFFWNLQEQYNKYKMARRQSLLESAGHLGRPCRLVLHSITVQGAFASTARIQAEVCVLREKPHQGLVPDAPPVRTPPRSPLRPGQANFGGESDIIILPSITTTSTLSITVLLQDVPIGTVYYPVAEVTATLRPTELRLMPGRTSPRSPSNFPLRRRKGSPTLRRTGDTEASECRGRLSPPHSVSFLSSPPTPQAIAAQGKDTNGGIQAAEGPPRLCTVWGDLTFYNNRSSAVGWVDVIEEAGQPVNEPRLLVVTPQSFGLLVTPQCVVGNLGFNMNQVRHVEPGGRSQRLPEREDETSLQNMSVNDKGGGSLTLSVSRPDGGEKDMILAVDSEQDARRWTQLLRRGSHDAAFGSGI 487
The following BLAST results are available for this feature:
BLAST of EWM29152.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111672|gb|EWM29152.1|0.000e+0100.00hypothetical protein Naga_100007g63 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1512rna1512Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications