EWM29171.1, cds1469 (CDS) Nannochloropsis gaditana

Overview
NameEWM29171.1
Unique Namecds1469
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:715865..716085 +
Alignment locationCM002457.1:716398..716803 +
Alignment locationCM002457.1:717036..717311 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29171.1
Productsec14 cytosolic factor
Orig transcript idgnl|cribi|Naga_100007g111.6498.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:715865..716085 +
CM002457.1supercontigCM002457.1:716398..716803 +
CM002457.1supercontigCM002457.1:717036..717311 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom
Homology
BLAST of EWM29171.1 vs. NCBI_GenBank
Match: gi|585111691|gb|EWM29171.1| (sec14 cytosolic factor [Nannochloropsis gaditana])

HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE 300
            MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE
Sbjct:    1 MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE 300          
BLAST of EWM29171.1 vs. NCBI_GenBank
Match: gi|585111693|gb|EWM29173.1| (sec14 cytosolic factor [Nannochloropsis gaditana])

HSP 1 Score: 480.33 bits (1235), Expect = 3.718e-170
Identity = 230/249 (92.37%), Postives = 239/249 (95.98%), Query Frame = 0
Query:   54 LQLMAEFQRVLDSANVILPR--NFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE 300
            L++   +++   S+ V+L +  +FWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE
Sbjct:    7 LKVKHPYRKEFLSSIVLLSQLNSFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE 255          
BLAST of EWM29171.1 vs. NCBI_GenBank
Match: gi|585111692|gb|EWM29172.1| (sec14 cytosolic factor [Nannochloropsis gaditana])

HSP 1 Score: 440.269 bits (1131), Expect = 6.957e-155
Identity = 211/212 (99.53%), Postives = 211/212 (99.53%), Query Frame = 0
Query:    1 MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVII 212
            MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKV I
Sbjct:    1 MERQRDILECQYNQEKFRERGQQADQQSALVDATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVRI 212          
BLAST of EWM29171.1 vs. NCBI_GenBank
Match: gi|551628289|ref|XP_005794125.1| (hypothetical protein EMIHUDRAFT_431773 [Emiliania huxleyi CCMP1516] >gi|485648790|gb|EOD41696.1| hypothetical protein EMIHUDRAFT_431773 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 75.485 bits (184), Expect = 3.264e-12
Identity = 58/206 (28.16%), Postives = 97/206 (47.09%), Query Frame = 0
Query:   81 HESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDA---FFIRHYPCLCLGFEDGSENYSPVVYRRLTHLN-TKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHS 282
            H SR  L  R+L A   HV ++ + L  D+AWR + R+++        V+G E A    F+ H    CL          PV+ +   H+  +++L    +T++++  +  W  E+  R L E        Q  +I D  G +  Q  +  + +L   ++    H+PERL    II AP   +FVW  IVS  + E+T+ K+ I+ +
Sbjct:   10 HLSRADLL-RWLRARKLHVGKSSDFLQADLAWRRKHRIEERSGEDADAVLGCEVAKLKAFLPHENPPCL-----DRRGRPVIIKHFGHVYFSRLLNSTNITLDQLCDYNWWVNEQYTRRLNE----VGAEQWLIICDAKGFSPTQMDRVALKVLKSMANIDADHYPERLGGFVIINAPASLAFVWK-IVSAWLDEKTKAKVQIISA 204          
BLAST of EWM29171.1 vs. NCBI_GenBank
Match: gi|765557877|gb|KJE98137.1| (SEC14-like protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 73.9442 bits (180), Expect = 3.925e-11
Identity = 62/216 (28.70%), Postives = 99/216 (45.83%), Query Frame = 0
Query:   86 SLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHY-PCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPE--SFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPS 298
            S+  RFL A +  V +A   L R + WR  +    +  M ++  V       +R Y PC   G+    ++  PV   R+  L+ K +  K V+ E +IK  ++  E   +L  E  E    P      I+D  G+      +  +SI+         ++PE + +L +I AP  F   W +IV  +  ERTRNKI+IL    G+ +LE+   + PS
Sbjct:  261 SVLLRFLRAREFSVEKAHEMLTRSLYWRQAVGADHILEMYKQPDV-------LRDYLPC---GWHHFDKDGRPVFVFRVGQLDVKGVM-KSVSEEDLIKQLIFINETGMKLASEATERTGRPIHDFTCIVDFEGLGLKHLWRPGVSIIQKIIQQDTANYPETMARLVVIRAPTLFPVAW-SIVRNVFDERTRNKIVIL----GDNFLEQLADILPS 460          
BLAST of EWM29171.1 vs. NCBI_GenBank
Match: gi|765557878|gb|KJE98138.1| (SEC14-like protein, variant [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 73.9442 bits (180), Expect = 4.366e-11
Identity = 62/216 (28.70%), Postives = 99/216 (45.83%), Query Frame = 0
Query:   86 SLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHY-PCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPE--SFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPS 298
            S+  RFL A +  V +A   L R + WR  +    +  M ++  V       +R Y PC   G+    ++  PV   R+  L+ K +  K V+ E +IK  ++  E   +L  E  E    P      I+D  G+      +  +SI+         ++PE + +L +I AP  F   W +IV  +  ERTRNKI+IL    G+ +LE+   + PS
Sbjct:  145 SVLLRFLRAREFSVEKAHEMLTRSLYWRQAVGADHILEMYKQPDV-------LRDYLPC---GWHHFDKDGRPVFVFRVGQLDVKGVM-KSVSEEDLIKQLIFINETGMKLASEATERTGRPIHDFTCIVDFEGLGLKHLWRPGVSIIQKIIQQDTANYPETMARLVVIRAPTLFPVAW-SIVRNVFDERTRNKIVIL----GDNFLEQLADILPS 344          
BLAST of EWM29171.1 vs. NCBI_GenBank
Match: gi|470289052|ref|XP_004342753.1| (SEC14-like protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 73.9442 bits (180), Expect = 4.585e-11
Identity = 62/216 (28.70%), Postives = 99/216 (45.83%), Query Frame = 0
Query:   86 SLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHY-PCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPE--SFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPS 298
            S+  RFL A +  V +A   L R + WR  +    +  M ++  V       +R Y PC   G+    ++  PV   R+  L+ K +  K V+ E +IK  ++  E   +L  E  E    P      I+D  G+      +  +SI+         ++PE + +L +I AP  F   W +IV  +  ERTRNKI+IL    G+ +LE+   + PS
Sbjct:  246 SVLLRFLRAREFSVEKAHEMLTRSLYWRQAVGADHILEMYKQPDV-------LRDYLPC---GWHHFDKDGRPVFVFRVGQLDVKGVM-KSVSEEDLIKQLIFINETGMKLASEATERTGRPIHDFTCIVDFEGLGLKHLWRPGVSIIQKIIQQDTANYPETMARLVVIRAPTLFPVAW-SIVRNVFDERTRNKIVIL----GDNFLEQLADILPS 445          
BLAST of EWM29171.1 vs. NCBI_GenBank
Match: gi|676393519|ref|XP_009040037.1| (hypothetical protein AURANDRAFT_66459 [Aureococcus anophagefferens] >gi|323449504|gb|EGB05392.1| hypothetical protein AURANDRAFT_66459 [Aureococcus anophagefferens])

HSP 1 Score: 72.4034 bits (176), Expect = 1.718e-10
Identity = 51/191 (26.70%), Postives = 89/191 (46.60%), Query Frame = 0
Query:   90 RFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVY-RRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMI 279
            +F+V   G V  A  + A    WR E  +  +   A      I+     RHYP     +  G      ++Y  R+ H++   L   GVT++ +++H +  +E    +L   P+  P     V++D+ G+  +QC       +   ++ +K H+PER  ++ I  AP+ FS VW  +VS ++   T+ KI I
Sbjct:  813 KFIVGTGGDVREASRRWAETSRWRRERDVDAVMGEAHPKFAAIK-----RHYP----HYWCGRGRRGELIYVERVGHVDAAGLKRDGVTIDHLVRHYILLHEFTWSVLAPAPDG-PTSYQCVVLDVDGVQLSQCRGIRFDYVRRCAAIAKEHYPERCSRMVIANAPQWFSVVWK-MVSPLVDPNTKKKIRI 992          
BLAST of EWM29171.1 vs. NCBI_GenBank
Match: gi|629102748|gb|KCW68217.1| (hypothetical protein EUGRSUZ_F01871 [Eucalyptus grandis])

HSP 1 Score: 69.3218 bits (168), Expect = 1.176e-9
Identity = 61/256 (23.83%), Postives = 117/256 (45.70%), Query Frame = 0
Query:   52 EELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIR----LKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQL---KVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE 300
            EE +++ EF++ L S   + PR+    NYH     +  RFL A    + +A++  A  + WR +      L+D Q   R +V        +++YP    G +   ++  P+   RL  +N   L +   T+++ +++ + ++EK     F        + +     I+D+ G+     TK    ++         ++PE L +++II A   F  +WNT+ S + P  T +KI +L    GN +  K +++  + E
Sbjct:   81 EEQKIVDEFRQALISDGFLPPRH---DNYH-----MLLRFLKARKFDIQKARHMWAEMIQWRKDFGTDTILEDFQFRERNEV--------LQYYPQAYHGVD---KDGRPIYIERLGKVNPDKLMQV-TTIDRYVRYHVQEFEKTVAFKFPACSVAAKKHIDSSTTILDVKGVGLKNFTKQARELIMQLQKIDSDYYPETLSRMFIINAAPGFKLLWNTVKSFLDPT-TISKIHVL----GNKYRSKLLEVIDASE 311          
BLAST of EWM29171.1 vs. NCBI_GenBank
Match: gi|325190291|emb|CCA24767.1| (SEC14 cytosolic factor putative [Albugo laibachii Nc14])

HSP 1 Score: 69.3218 bits (168), Expect = 1.570e-9
Identity = 57/231 (24.68%), Postives = 112/231 (48.48%), Query Frame = 0
Query:   52 EELQLMAEFQRVLDSANV-ILPRNFWEANYHESRCSLFW-RFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMIL 280
            E+L+++   Q V D ++   L +N  + +    +   F  RF+ A  G+  R K +  + ++WR E    D+  + R+     E+    + YP     F   S+  +PV Y +   ++  VL + G+++E +I H ++  E     L+ + E     +   ++D+SG+  +    +++  +   S+F+  H+PER   ++II  P  F+ +W  IV  +I   TR K+ +L
Sbjct:  416 EQLEMVQVDQSVADDSDFQDLTQNSEQTDRSSGKSIPFSPRFIAAEKGNEERGKERYLQTLSWRKE---NDVDQILRRPHRNFEN--IKKCYPQY---FHGRSKAGNPVYYEKPGKIDLLVLKQLGLSIEDLIYHYMYITE----FLWTYIEPDDAARSITVLDVSGIGMSSLGGEVLDFIKRASTFTAAHYPERSAHIFIINIPGWFNMIWR-IVKPLIDPVTREKVHML 633          
The following BLAST results are available for this feature:
BLAST of EWM29171.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111691|gb|EWM29171.1|0.000e+0100.00sec14 cytosolic factor [Nannochloropsis gaditana][more]
gi|585111693|gb|EWM29173.1|3.718e-17092.37sec14 cytosolic factor [Nannochloropsis gaditana][more]
gi|585111692|gb|EWM29172.1|6.957e-15599.53sec14 cytosolic factor [Nannochloropsis gaditana][more]
gi|551628289|ref|XP_005794125.1|3.264e-1228.16hypothetical protein EMIHUDRAFT_431773 [Emiliania ... [more]
gi|765557877|gb|KJE98137.1|3.925e-1128.70SEC14-like protein [Capsaspora owczarzaki ATCC 308... [more]
gi|765557878|gb|KJE98138.1|4.366e-1128.70SEC14-like protein, variant [Capsaspora owczarzaki... [more]
gi|470289052|ref|XP_004342753.1|4.585e-1128.70SEC14-like protein [Capsaspora owczarzaki ATCC 308... [more]
gi|676393519|ref|XP_009040037.1|1.718e-1026.70hypothetical protein AURANDRAFT_66459 [Aureococcus... [more]
gi|629102748|gb|KCW68217.1|1.176e-923.83hypothetical protein EUGRSUZ_F01871 [Eucalyptus gr... [more]
gi|325190291|emb|CCA24767.1|1.570e-924.68SEC14 cytosolic factor putative [Albugo laibachii ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1472rna1472Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications