EWM29129.1, cds1456 (CDS) Nannochloropsis gaditana

Overview
NameEWM29129.1
Unique Namecds1456
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:688208..688712 +
Alignment locationCM002457.1:688807..688919 +
Alignment locationCM002457.1:688996..689078 +
Alignment locationCM002457.1:689167..689303 +
Alignment locationCM002457.1:689490..689589 +
Alignment locationCM002457.1:689721..689967 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29129.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g122.6456.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:688208..688712 +
CM002457.1supercontigCM002457.1:688807..688919 +
CM002457.1supercontigCM002457.1:688996..689078 +
CM002457.1supercontigCM002457.1:689167..689303 +
CM002457.1supercontigCM002457.1:689490..689589 +
CM002457.1supercontigCM002457.1:689721..689967 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0000178exosome (RNase complex)
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR012340NA-bd_OB-fold
IPR026699Exosome_RNA_bind1/RRP40/RRP4
Homology
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|585111649|gb|EWM29129.1| (hypothetical protein Naga_100007g122 [Nannochloropsis gaditana])

HSP 1 Score: 815.453 bits (2105), Expect = 0.000e+0
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0
Query:    1 MRLFVSMRKRETPPKVMTKLTAGKDGYQSGREEGEVLDEEGTPCASRTITGARRSPPYTWDDTCPISPLDLISCRKLCLSARDTPKDNVSFAFATRTADTQSEAAAVEERGGRERQDMNEESMEEEGHMDLSEAAAGLVQAALRIAAPRVLLPGDTSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSISNRHRPSALLVPI 394
            MRLFVSMRKRETPPKVMTKLTAGKDGYQSGREEGEVLDEEGTPCASRTITGARRSPPYTWDDTCPISPLDLISCRKLCLSARDTPKDNVSFAFATRTADTQSEAAAVEERGGRERQDMNEESMEEEGHMDLSEAAAGLVQAALRIAAPRVLLPGDTSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSISNRHRPSALLVPI
Sbjct:    1 MRLFVSMRKRETPPKVMTKLTAGKDGYQSGREEGEVLDEEGTPCASRTITGARRSPPYTWDDTCPISPLDLISCRKLCLSARDTPKDNVSFAFATRTADTQSEAAAVEERGGRERQDMNEESMEEEGHMDLSEAAAGLVQAALRIAAPRVLLPGDTSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSISNRHRPSALLVPI 394          
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|299471081|emb|CBN78940.1| (RNA binding protein [Ectocarpus siliculosus])

HSP 1 Score: 212.231 bits (539), Expect = 2.963e-63
Identity = 114/235 (48.51%), Postives = 154/235 (65.53%), Query Frame = 0
Query:  150 VLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVT-QGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSI 381
            V+LPGD  T          +LG GLV  H+  +   AT+AG+LR++ P +Y +++  RRY  + +D VLGIVEDR  ++Y++NIF S    L  L FDGASKR+KP LR GSLV+CRV     D++TELTCT T  G KKDWMTG+STFGEL+GG + RCSL L + L   DCRVL+ L KH +PFE+A G NG F+V++  +   + I N +LNSE++ D   + MV  + K +
Sbjct:    9 VVLPGDDVTETTTRTTRSLRLGPGLVQ-HAQDKVM-ATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKH-MPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDAQTDAMVDRLAKHM 240          
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|290977236|ref|XP_002671344.1| (predicted protein [Naegleria gruberi] >gi|284084912|gb|EFC38600.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 203.371 bits (516), Expect = 1.082e-59
Identity = 108/220 (49.09%), Postives = 147/220 (66.82%), Query Frame = 0
Query:  164 SRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGP-ENYRLNIFA-SAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGIKK-DWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKS 380
            S  K+G+GL+   S      ATKAG+LRF  PN Y ++N Q RYVP   DMV+G+V+D+ P E Y ++IFA      LP + FDGA++RN+P L  GSLVY RV LA  D+D E+TC  + G+KK DW TG+S FGELKGG VT CSLG+ R+LLD +C +L++L +H V FE+A+G NG  ++N++    IV I N + NSE +     +QM+ F+ KS
Sbjct:   33 SIVKIGHGLLQLES---NIIATKAGLLRFIPPNRYFVENNQHRYVPMVGDMVIGVVKDKVPVEQYSVDIFAHQGLALLPFIGFDGATRRNRPDLGPGSLVYGRVTLANKDLDLEITCESSPGMKKKDWSTGKSVFGELKGGYVTECSLGMARKLLDPNCYLLKLLSEH-VSFEIAIGLNGRVWINSEAPNDIVLICNAIQNSEHLTQDQVQQMLTFLFKS 248          
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|1173960941|gb|OQS07022.1| (exosome complex exonuclease RRP40 [Thraustotheca clavata])

HSP 1 Score: 190.66 bits (483), Expect = 7.682e-55
Identity = 104/230 (45.22%), Postives = 143/230 (62.17%), Query Frame = 0
Query:  148 PRVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTV-TQGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMV 374
            P  +LPGD  T+ + +   + +LG GLV++ +      AT AG+LR++ PN Y ID   +RY+P  DD V+G++ DR  E YRL+I AS    L  LAFDGASKRN+P L+ GSLVYCRV  A  +++  LTC   +   KKDWMTG + +GEL GG V + S+GL + LL  +C VL  L +  +PFE+AVG NG  +VN+      + I N +LNSE + +   E MV
Sbjct:   19 PLSVLPGDDVTTSIANTNQKLRLGAGLVASGT---QVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQPGSLVYCRVASANQNLEPSLTCEAPSHMTKKDWMTGLALYGELNGGYVLKTSIGLAKSLLKDECVVLSALGR-AIPFEIAVGFNGIIWVNSGTCQDTILITNAILNSEGLPEAQVEAMV 244          
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|673044951|ref|XP_008876436.1| (hypothetical protein H310_11510 [Aphanomyces invadans] >gi|574467823|gb|ETV94844.1| hypothetical protein H310_11510 [Aphanomyces invadans])

HSP 1 Score: 185.652 bits (470), Expect = 8.007e-53
Identity = 101/235 (42.98%), Postives = 145/235 (61.70%), Query Frame = 0
Query:  148 PRVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGI-KKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILK 379
            PR  LPGD  T  + +   + +LG GLV+  +      +T AG+LR++ PN Y +D   +RY P  +D V+G++ DR  E YR++I +S+   L  LAFDGASKRN+P L+ G+LVYCRV  A  D+D  +TC     + KKDWMTG + +GEL GG V + S+GL + L+  DC VL+ L +  +PFE+AVG NG  ++N+K     + I N +LNSE +     E MV  +L+
Sbjct:   19 PRTCLPGDDITQHITNVTQKLRLGAGLVA--TCDNRVVSTNAGVLRYRPPNRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQPGTLVYCRVVRATKDLDACVTCEAPSHLAKKDWMTGLAIYGELVGGYVLKTSIGLAKTLIQDDCIVLEALGR-AIPFELAVGMNGVVWLNSKSNQDTILIANAILNSEGLTAAQSEAMVVKLLQ 250          
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|325192649|emb|CCA27072.1| (exosome complex exonuclease RRP40 putative [Albugo laibachii Nc14])

HSP 1 Score: 185.652 bits (470), Expect = 1.615e-52
Identity = 104/240 (43.33%), Postives = 146/240 (60.83%), Query Frame = 0
Query:  147 APRVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGI-KKDWMTGESTFGELKGGTVTRCSLGLCRQLL-DKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSIS 382
            +P ++LPGD  T+ +    +  KLG+GL     P     A+  GILR++ PN Y ID   +RY+   DD V+GIV DR  E YRLNI ++    L  LAFDGA+KRN+P L+ GSLVY RV  A  DV+ ELTC     + K+DWMTG S +GEL GG   R S+G  RQLL  +D  +L +L +  + +E+A+G+NG  ++ +K     V + N LLNSE +     E M++ +LK+I+
Sbjct:   41 SPCIVLPGDDLTTTITKSGNHVKLGSGLKHIKEPHNRIVASNCGILRYRPPNRYWIDYDHKRYIASVDDSVIGIVIDRNAEFYRLNIGSTNTAVLGTLAFDGATKRNRPNLQVGSLVYARVIKA--DVECELTCEAPANVNKRDWMTGLSIYGELSGGYNFRVSIGFARQLLRAQDDSILHLLGR-TISYEIAIGQNGIVWLQSKANQHTVLLANALLNSECMTQAQVETMIQTLLKAIA 277          
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|301090233|ref|XP_002895341.1| (exosome complex exonuclease RRP40, putative [Phytophthora infestans T30-4] >gi|262100455|gb|EEY58507.1| exosome complex exonuclease RRP40, putative [Phytophthora infestans T30-4])

HSP 1 Score: 182.57 bits (462), Expect = 1.724e-51
Identity = 103/228 (45.18%), Postives = 136/228 (59.65%), Query Frame = 0
Query:  150 VLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGI-KKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMV 374
            ++LPGD  T+ +     R KLG+GL     P      T AGILR++  N Y ++   +RY    DD V+GI+ DR  E YR+NI A+A   L  LAFDGA+KRN+P LR GSLVY RV     DV+ E+TC     + KKDWMTG + +GEL  G V + S+GL + LL +DC+VL  L K  + FEVAVG NG  +V+AK    I  I N ++NSE +     + MV
Sbjct:   37 IVLPGDDVTATLTKTNHRVKLGSGL--KQLPDERIVCTNAGILRYRPANRYWVEFNHKRYTASIDDGVIGILTDRNAEFYRVNIGAAASATLGSLAFDGATKRNRPSLRLGSLVYARVSKTNADVEPEITCEAPPSVTKKDWMTGLAIYGELNDGYVFKTSIGLAKSLLHEDCQVLASLGKK-LAFEVAVGVNGVVWVHAKTTKNITIISNAIMNSEAMSLSKVDAMV 261          
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|698825329|ref|XP_009845693.1| (hypothetical protein H257_18352 [Aphanomyces astaci] >gi|574099206|gb|ETV64836.1| hypothetical protein H257_18352 [Aphanomyces astaci])

HSP 1 Score: 182.185 bits (461), Expect = 1.904e-51
Identity = 100/234 (42.74%), Postives = 142/234 (60.68%), Query Frame = 0
Query:  149 RVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTV-TQGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILK 379
            R  LPGD  T  + +   + +LG GLV+  +       T AG+LR++ PN Y +D   +RY P  DD V+G+V DR  E YR++I  S+   L  LAFDGASKRN+P ++ GSLVYCRV  A  D+D  +TC   T   KKDWMTG + +GEL GG V + S+GL + L+  +C VL+ L +  +PFE+AVG NG  ++N+K     + + N +LNSE +     E MV  +++
Sbjct:   20 RTCLPGDDITQHITNVTQKLRLGAGLVA--TTDNRVVCTNAGVLRYRPPNRYWLDFNHKRYTPALDDGVVGMVVDRNAEFYRVDIGGSSFATLGMLAFDGASKRNRPNMQPGSLVYCRVVRAAKDLDACVTCEAPTHLAKKDWMTGLAIYGELTGGYVFKASIGLAKSLVQDECAVLESLGR-AIPFELAVGVNGVVWLNSKSSQDTILVANAILNSEGLTPAQCEAMVAKLVQ 250          
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|669165188|ref|XP_008618156.1| (hypothetical protein SDRG_13836 [Saprolegnia diclina VS20] >gi|530730266|gb|EQC28508.1| hypothetical protein SDRG_13836 [Saprolegnia diclina VS20])

HSP 1 Score: 177.178 bits (448), Expect = 1.582e-49
Identity = 107/241 (44.40%), Postives = 145/241 (60.17%), Query Frame = 0
Query:  148 PRVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGI-KKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSISNRH 385
            P  +LPGD  T  + +   + +LG GL++  +   A  +T AG+LR++ PN Y +D   +RYVP  DD V+G+V DR  E YRL+I AS+   L  LAFDGASKRN+P L+ G+LVYCRV     D++  LTC     + KKDWMTG + +GEL GG V + S+GL + LL  DC VL  L K  +PFEVA G NG  +VN+      + I N +LNSE + D   E MV  ++     +H
Sbjct:   19 PATVLPGDDVTKHIANLSQKLRLGAGLIANGN---AITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGALVYCRVLSTNQDLEPALTCEAPSHMSKKDWMTGLALYGELNGGYVFKASIGLAKSLLKDDCAVLSALGK-AMPFEVAAGFNGLVWVNSSSCHDTILITNAILNSEGLPDAQVEAMVDKLISDQGTQH 255          
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|953498422|emb|CEG40060.1| (exosome complex exonuclease [Plasmopara halstedii])

HSP 1 Score: 176.407 bits (446), Expect = 4.361e-49
Identity = 113/266 (42.48%), Postives = 153/266 (57.52%), Query Frame = 0
Query:  116 QDMNEESMEEEGHMDLSEAAAGLVQAALR----IAAPRVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGI-KKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMV 374
            Q +  E++E++     SE A   ++ A R    +  P V+LPGD  T+ +     R KLG GL   H        T AG+LR++  N Y ID   +RY    DD V+GIV DR  + YR+NI A+A   L  LAFDGA+KRN+P LR GSLVY RV  +  +V+ E+TC     + KKDWMTG + +GEL  G V + S+GL + LL +DC+VL  L    + FE+A+G NG  +VNAK    I  I N +LNSE +  G  + MV
Sbjct:    3 QVIRPETVEDKA----SEDANSFLEEARRSVNFVFTPFVVLPGDDVTTTVTKTTRRVKLGAGLKQLHD--ERIVCTNAGVLRYRPSNRYWIDYNYKRYTVSMDDNVIGIVTDRNADFYRVNIGAAACATLGTLAFDGATKRNRPSLRLGSLVYARVSKSNPNVEPEITCEAPPSVTKKDWMTGLAIYGELNDGHVFKTSIGLAKSLLREDCQVLASLGMK-LAFELAIGVNGVVWVNAKTTKNITIISNAILNSETMSPGHIDAMV 261          
The following BLAST results are available for this feature:
BLAST of EWM29129.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111649|gb|EWM29129.1|0.000e+0100.00hypothetical protein Naga_100007g122 [Nannochlorop... [more]
gi|299471081|emb|CBN78940.1|2.963e-6348.51RNA binding protein [Ectocarpus siliculosus][more]
gi|290977236|ref|XP_002671344.1|1.082e-5949.09predicted protein [Naegleria gruberi] >gi|28408491... [more]
gi|1173960941|gb|OQS07022.1|7.682e-5545.22exosome complex exonuclease RRP40 [Thraustotheca c... [more]
gi|673044951|ref|XP_008876436.1|8.007e-5342.98hypothetical protein H310_11510 [Aphanomyces invad... [more]
gi|325192649|emb|CCA27072.1|1.615e-5243.33exosome complex exonuclease RRP40 putative [Albugo... [more]
gi|301090233|ref|XP_002895341.1|1.724e-5145.18exosome complex exonuclease RRP40, putative [Phyto... [more]
gi|698825329|ref|XP_009845693.1|1.904e-5142.74hypothetical protein H257_18352 [Aphanomyces astac... [more]
gi|669165188|ref|XP_008618156.1|1.582e-4944.40hypothetical protein SDRG_13836 [Saprolegnia dicli... [more]
gi|953498422|emb|CEG40060.1|4.361e-4942.48exosome complex exonuclease [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1459rna1459Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications