EWM29129.1, cds1456 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|585111649|gb|EWM29129.1| (hypothetical protein Naga_100007g122 [Nannochloropsis gaditana]) HSP 1 Score: 815.453 bits (2105), Expect = 0.000e+0 Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0
Query: 1 MRLFVSMRKRETPPKVMTKLTAGKDGYQSGREEGEVLDEEGTPCASRTITGARRSPPYTWDDTCPISPLDLISCRKLCLSARDTPKDNVSFAFATRTADTQSEAAAVEERGGRERQDMNEESMEEEGHMDLSEAAAGLVQAALRIAAPRVLLPGDTSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSISNRHRPSALLVPI 394
MRLFVSMRKRETPPKVMTKLTAGKDGYQSGREEGEVLDEEGTPCASRTITGARRSPPYTWDDTCPISPLDLISCRKLCLSARDTPKDNVSFAFATRTADTQSEAAAVEERGGRERQDMNEESMEEEGHMDLSEAAAGLVQAALRIAAPRVLLPGDTSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSISNRHRPSALLVPI
Sbjct: 1 MRLFVSMRKRETPPKVMTKLTAGKDGYQSGREEGEVLDEEGTPCASRTITGARRSPPYTWDDTCPISPLDLISCRKLCLSARDTPKDNVSFAFATRTADTQSEAAAVEERGGRERQDMNEESMEEEGHMDLSEAAAGLVQAALRIAAPRVLLPGDTSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSISNRHRPSALLVPI 394
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|299471081|emb|CBN78940.1| (RNA binding protein [Ectocarpus siliculosus]) HSP 1 Score: 212.231 bits (539), Expect = 2.963e-63 Identity = 114/235 (48.51%), Postives = 154/235 (65.53%), Query Frame = 0
Query: 150 VLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVT-QGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSI 381
V+LPGD T +LG GLV H+ + AT+AG+LR++ P +Y +++ RRY + +D VLGIVEDR ++Y++NIF S L L FDGASKR+KP LR GSLV+CRV D++TELTCT T G KKDWMTG+STFGEL+GG + RCSL L + L DCRVL+ L KH +PFE+A G NG F+V++ + + I N +LNSE++ D + MV + K +
Sbjct: 9 VVLPGDDVTETTTRTTRSLRLGPGLVQ-HAQDKVM-ATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKH-MPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDAQTDAMVDRLAKHM 240
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|290977236|ref|XP_002671344.1| (predicted protein [Naegleria gruberi] >gi|284084912|gb|EFC38600.1| predicted protein [Naegleria gruberi]) HSP 1 Score: 203.371 bits (516), Expect = 1.082e-59 Identity = 108/220 (49.09%), Postives = 147/220 (66.82%), Query Frame = 0
Query: 164 SRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGP-ENYRLNIFA-SAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGIKK-DWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKS 380
S K+G+GL+ S ATKAG+LRF PN Y ++N Q RYVP DMV+G+V+D+ P E Y ++IFA LP + FDGA++RN+P L GSLVY RV LA D+D E+TC + G+KK DW TG+S FGELKGG VT CSLG+ R+LLD +C +L++L +H V FE+A+G NG ++N++ IV I N + NSE + +QM+ F+ KS
Sbjct: 33 SIVKIGHGLLQLES---NIIATKAGLLRFIPPNRYFVENNQHRYVPMVGDMVIGVVKDKVPVEQYSVDIFAHQGLALLPFIGFDGATRRNRPDLGPGSLVYGRVTLANKDLDLEITCESSPGMKKKDWSTGKSVFGELKGGYVTECSLGMARKLLDPNCYLLKLLSEH-VSFEIAIGLNGRVWINSEAPNDIVLICNAIQNSEHLTQDQVQQMLTFLFKS 248
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|1173960941|gb|OQS07022.1| (exosome complex exonuclease RRP40 [Thraustotheca clavata]) HSP 1 Score: 190.66 bits (483), Expect = 7.682e-55 Identity = 104/230 (45.22%), Postives = 143/230 (62.17%), Query Frame = 0
Query: 148 PRVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTV-TQGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMV 374
P +LPGD T+ + + + +LG GLV++ + AT AG+LR++ PN Y ID +RY+P DD V+G++ DR E YRL+I AS L LAFDGASKRN+P L+ GSLVYCRV A +++ LTC + KKDWMTG + +GEL GG V + S+GL + LL +C VL L + +PFE+AVG NG +VN+ + I N +LNSE + + E MV
Sbjct: 19 PLSVLPGDDVTTSIANTNQKLRLGAGLVASGT---QVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQPGSLVYCRVASANQNLEPSLTCEAPSHMTKKDWMTGLALYGELNGGYVLKTSIGLAKSLLKDECVVLSALGR-AIPFEIAVGFNGIIWVNSGTCQDTILITNAILNSEGLPEAQVEAMV 244
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|673044951|ref|XP_008876436.1| (hypothetical protein H310_11510 [Aphanomyces invadans] >gi|574467823|gb|ETV94844.1| hypothetical protein H310_11510 [Aphanomyces invadans]) HSP 1 Score: 185.652 bits (470), Expect = 8.007e-53 Identity = 101/235 (42.98%), Postives = 145/235 (61.70%), Query Frame = 0
Query: 148 PRVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGI-KKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILK 379
PR LPGD T + + + +LG GLV+ + +T AG+LR++ PN Y +D +RY P +D V+G++ DR E YR++I +S+ L LAFDGASKRN+P L+ G+LVYCRV A D+D +TC + KKDWMTG + +GEL GG V + S+GL + L+ DC VL+ L + +PFE+AVG NG ++N+K + I N +LNSE + E MV +L+
Sbjct: 19 PRTCLPGDDITQHITNVTQKLRLGAGLVA--TCDNRVVSTNAGVLRYRPPNRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQPGTLVYCRVVRATKDLDACVTCEAPSHLAKKDWMTGLAIYGELVGGYVLKTSIGLAKTLIQDDCIVLEALGR-AIPFELAVGMNGVVWLNSKSNQDTILIANAILNSEGLTAAQSEAMVVKLLQ 250
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|325192649|emb|CCA27072.1| (exosome complex exonuclease RRP40 putative [Albugo laibachii Nc14]) HSP 1 Score: 185.652 bits (470), Expect = 1.615e-52 Identity = 104/240 (43.33%), Postives = 146/240 (60.83%), Query Frame = 0
Query: 147 APRVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGI-KKDWMTGESTFGELKGGTVTRCSLGLCRQLL-DKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSIS 382
+P ++LPGD T+ + + KLG+GL P A+ GILR++ PN Y ID +RY+ DD V+GIV DR E YRLNI ++ L LAFDGA+KRN+P L+ GSLVY RV A DV+ ELTC + K+DWMTG S +GEL GG R S+G RQLL +D +L +L + + +E+A+G+NG ++ +K V + N LLNSE + E M++ +LK+I+
Sbjct: 41 SPCIVLPGDDLTTTITKSGNHVKLGSGLKHIKEPHNRIVASNCGILRYRPPNRYWIDYDHKRYIASVDDSVIGIVIDRNAEFYRLNIGSTNTAVLGTLAFDGATKRNRPNLQVGSLVYARVIKA--DVECELTCEAPANVNKRDWMTGLSIYGELSGGYNFRVSIGFARQLLRAQDDSILHLLGR-TISYEIAIGQNGIVWLQSKANQHTVLLANALLNSECMTQAQVETMIQTLLKAIA 277
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|301090233|ref|XP_002895341.1| (exosome complex exonuclease RRP40, putative [Phytophthora infestans T30-4] >gi|262100455|gb|EEY58507.1| exosome complex exonuclease RRP40, putative [Phytophthora infestans T30-4]) HSP 1 Score: 182.57 bits (462), Expect = 1.724e-51 Identity = 103/228 (45.18%), Postives = 136/228 (59.65%), Query Frame = 0
Query: 150 VLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGI-KKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMV 374
++LPGD T+ + R KLG+GL P T AGILR++ N Y ++ +RY DD V+GI+ DR E YR+NI A+A L LAFDGA+KRN+P LR GSLVY RV DV+ E+TC + KKDWMTG + +GEL G V + S+GL + LL +DC+VL L K + FEVAVG NG +V+AK I I N ++NSE + + MV
Sbjct: 37 IVLPGDDVTATLTKTNHRVKLGSGL--KQLPDERIVCTNAGILRYRPANRYWVEFNHKRYTASIDDGVIGILTDRNAEFYRVNIGAAASATLGSLAFDGATKRNRPSLRLGSLVYARVSKTNADVEPEITCEAPPSVTKKDWMTGLAIYGELNDGYVFKTSIGLAKSLLHEDCQVLASLGKK-LAFEVAVGVNGVVWVHAKTTKNITIISNAIMNSEAMSLSKVDAMV 261
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|698825329|ref|XP_009845693.1| (hypothetical protein H257_18352 [Aphanomyces astaci] >gi|574099206|gb|ETV64836.1| hypothetical protein H257_18352 [Aphanomyces astaci]) HSP 1 Score: 182.185 bits (461), Expect = 1.904e-51 Identity = 100/234 (42.74%), Postives = 142/234 (60.68%), Query Frame = 0
Query: 149 RVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTV-TQGIKKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILK 379
R LPGD T + + + +LG GLV+ + T AG+LR++ PN Y +D +RY P DD V+G+V DR E YR++I S+ L LAFDGASKRN+P ++ GSLVYCRV A D+D +TC T KKDWMTG + +GEL GG V + S+GL + L+ +C VL+ L + +PFE+AVG NG ++N+K + + N +LNSE + E MV +++
Sbjct: 20 RTCLPGDDITQHITNVTQKLRLGAGLVA--TTDNRVVCTNAGVLRYRPPNRYWLDFNHKRYTPALDDGVVGMVVDRNAEFYRVDIGGSSFATLGMLAFDGASKRNRPNMQPGSLVYCRVVRAAKDLDACVTCEAPTHLAKKDWMTGLAIYGELTGGYVFKASIGLAKSLVQDECAVLESLGR-AIPFELAVGVNGVVWLNSKSSQDTILVANAILNSEGLTPAQCEAMVAKLVQ 250
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|669165188|ref|XP_008618156.1| (hypothetical protein SDRG_13836 [Saprolegnia diclina VS20] >gi|530730266|gb|EQC28508.1| hypothetical protein SDRG_13836 [Saprolegnia diclina VS20]) HSP 1 Score: 177.178 bits (448), Expect = 1.582e-49 Identity = 107/241 (44.40%), Postives = 145/241 (60.17%), Query Frame = 0
Query: 148 PRVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGI-KKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMVKFILKSISNRH 385
P +LPGD T + + + +LG GL++ + A +T AG+LR++ PN Y +D +RYVP DD V+G+V DR E YRL+I AS+ L LAFDGASKRN+P L+ G+LVYCRV D++ LTC + KKDWMTG + +GEL GG V + S+GL + LL DC VL L K +PFEVA G NG +VN+ + I N +LNSE + D E MV ++ +H
Sbjct: 19 PATVLPGDDVTKHIANLSQKLRLGAGLIANGN---AITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGALVYCRVLSTNQDLEPALTCEAPSHMSKKDWMTGLALYGELNGGYVFKASIGLAKSLLKDDCAVLSALGK-AMPFEVAAGFNGLVWVNSSSCHDTILITNAILNSEGLPDAQVEAMVDKLISDQGTQH 255
BLAST of EWM29129.1 vs. NCBI_GenBank
Match: gi|953498422|emb|CEG40060.1| (exosome complex exonuclease [Plasmopara halstedii]) HSP 1 Score: 176.407 bits (446), Expect = 4.361e-49 Identity = 113/266 (42.48%), Postives = 153/266 (57.52%), Query Frame = 0
Query: 116 QDMNEESMEEEGHMDLSEAAAGLVQAALR----IAAPRVLLPGD--TSEMPDHLSRAKLGNGLVSAHSPPRAAKATKAGILRFQAPNTYRIDNQQRRYVPKRDDMVLGIVEDRGPENYRLNIFASAPGYLPHLAFDGASKRNKPVLRAGSLVYCRVGLACIDVDTELTCTVTQGI-KKDWMTGESTFGELKGGTVTRCSLGLCRQLLDKDCRVLQVLQKHGVPFEVAVGRNGAFYVNAKDQGIIVAIVNILLNSEMIQDGSEEQMV 374
Q + E++E++ SE A ++ A R + P V+LPGD T+ + R KLG GL H T AG+LR++ N Y ID +RY DD V+GIV DR + YR+NI A+A L LAFDGA+KRN+P LR GSLVY RV + +V+ E+TC + KKDWMTG + +GEL G V + S+GL + LL +DC+VL L + FE+A+G NG +VNAK I I N +LNSE + G + MV
Sbjct: 3 QVIRPETVEDKA----SEDANSFLEEARRSVNFVFTPFVVLPGDDVTTTVTKTTRRVKLGAGLKQLHD--ERIVCTNAGVLRYRPSNRYWIDYNYKRYTVSMDDNVIGIVTDRNADFYRVNIGAAACATLGTLAFDGATKRNRPSLRLGSLVYARVSKSNPNVEPEITCEAPPSVTKKDWMTGLAIYGELNDGHVFKTSIGLAKSLLREDCQVLASLGMK-LAFELAIGVNGVVWVNAKTTKNITIISNAILNSETMSPGHIDAMV 261 The following BLAST results are available for this feature:
BLAST of EWM29129.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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